MELO3C020585 (gene) Melon (DHL92) v4

Overview
NameMELO3C020585
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionDNA-directed RNA polymerases I and III subunit RPAC2
Locationchr12: 1249285 .. 1254282 (-)
RNA-Seq ExpressionMELO3C020585
SyntenyMELO3C020585
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCCGGATTACCGGGTTGGGAAATTAAGGGCCGAGTTGACCCAACCCAACCCGGTTTAGGGGTATATATATACAAAAAAAACCTAAATTCGTTTCGCCCAATCCCTTTAGCGCATTCAATCCCCCTTCGACAGTTCGACGTTCACATTTCGTAATCCCTTCGGCGATAAAATTCCGGCGACCTTTACATTCCGCCGGCGGCCTTTGCACATTTAGATCGTAAGTTCGACGGCACGATTCGCCTTTACACTTTCCAATCGCAAGTTCGACGGACTTCACATTCTGGGTTCTTCATCTTGTTTTGTCGGGTTCTTCATCTTGTTTTGTCCAAGGTTTGTTCATTGTTCCCATCTGACCTAACTTTCATTTTTTTTTTTTCTAATTGTTTTTTTGCTTTGAAAAATACTGCCGGAGATATTAATGATTTTGAGCAATATTTTGTTCAAACCTCAGTGTGTATTATTATTATTATTTTCAGCTTATTAATTCTAATCACATAGAAAAATAATAGAAATCCAAAGATTTTTCATGTGATGAATTAGATCCAAAAACATCCTTTGTAGATGATTTTATTTGTGGGGTGGCTTATGGAATTGAATATTTAGAAGTGTTTATAAAACAGGGGTTTGGGGGAGTACGTGCACTGTTTCTTTGACTCTATTTTTCTTTTAAATTAAAGAGTAAGATTTTAGGTTAATTGATATATAGTTCAAAGTGCCATTCTTGTATTGTTACATTGCTGTTGAGTGAGTGATGAGAAGACCGGCCGACCATAAATTTGGATCTCGGAAACACTAATTTTGGTCGAACATCATTATTAAATTAACTAAAGTACTCTATTTTATCAATTGGACAGTGCCAAAGGTTGTGTGTCATTATAAATTAATCTAAAAATTAAGGCTTTAGTTGAATAGTTATACAATCATGTAATTTTAAGTTCTAATGCTTGTATAAATTTGAGGAGTCATTTTGGTCCATGGTGGACATGGCGCAATGACACCAATGGAAATTTTTTTTTATTGAACTTTGAACATTTTAATGTATTTTTAGTGGACATTATTTAATTTTGAACTTTTGAATCTATTTTTCAATTTGAATGGACATTATTAGACATTATCGACATCCTATTTTATGTGATTATTACTTTTTATATCAATTTGAATTTTTGAATGTATTTTTAAATTTTAATGGACATTGCTGATTAATTTTTTTTAATGATTTTGAACTTTTAAATGAATATTATTGTAAATTTCGAATTTGAAAAGAATATTAAAATTTGAGTTGAAAGACTATGAAAATGATGAAAATTAAATTCTTAGCGATATAAAATTCTAAAATATAATATAATTGAAAAAAATACCAACCCGTCAATCCAACTCGGCCTAACCCGGTCACTTAGGGTTGGTCCACATTTTTTGGGTTGGGTTGACCCTTGAGTATTGAATCAATAGGGTTCAATTTTTCCCAACCCGGTCACTTAGGGTTGGTCCACATTTTTTCTCCAACCCGGCTTATGTACATCCTAGTACTTTCAATGTATCAAAACTCAGGAATCGGATTTTGGACGGTTCGGTTCAAACAGAACCACTCGGCTTGGTGTCAGTTCAAACGGACTGGCGGGACCGAATCATCAAATCAAAAGGGCCTAAACCTTATACCCCATACATCTTTTTCGTTTTTGTGATTTATTCTCTCTCCCAGCGTCTCTGCTCTCCAACTCACCGGCTGGCCGGCCACCGACCGCAACTACTTGATCTTATCGCCATTCTTCTCTCTCTTGGTAATCAGTTCTCTCTCGTATATACATATATGTGTATATATATGTATGTATTTATGTATGGTCAAGACACCTATCAACAAGTGAGCTATGCGAATGTTTGTTGCTTATTCATGTGTGTGTAAGCAATAGCTGTGTGGCATTGTTGAATTGAGTGATTTTTGCAGTTTTGGTTAGGAAGAATCTAATGGAATTTATGTTAAAAGATCGGTATTTCAAGACATCTAACTCTAGGTTATTTTTTCAATGTAATTTTCTTTGTGTTTAGGGCTATGTTAAAGTATGGTGCTGACATGAACTAAAGAATAGTGAATTGATCTGGAATTTTACTCATTAGTACTATCCTATAAGGGGAACTAGAATACATGAAAGAGGCCCTACGCTGCATGCCCAAAACCTGAAAAGTGAACTTAATGTTGTATTAGTTTTGGTTCACCATATCTGAATGTTATCGTGAAAGAGGTGATGATACTATTGGAGTTAGCTTAAGATCTCCTAAGTGGTAAGATTGAAACAGATTTAATCATGCCAATTTGATCATCGGTTCTTTTTAGATTAAAAAACTAATAGGTAGCTCTCTTGTAAAAGTGATGCCTTGTAAAAGTGGTTTCTCAAGGCACTCTATGAAACTAGACATGTTACTCTAACTCTTACATTCTGTTAAGAGAGTTGCAGTCAATTCTCCCTAAAAGTGTAATTGATAGAAAAGAATGAATGAGTAGTCATATATTTATTGCTCAATAGTGCATTCAAATCTTCTTCATACTTAGACCTAACACTTCAGTGGCTTCTCTTTCTAGCCTTTTAGGAGTAACATCCATACAAGTAAAGCTTGTAAGGATAGTAATATAGTCTTGACGAAATAACTCATCAAAATTTCTTCTTCAAGCTACGTATATGTATGTGCTATAGATCATGGAGGTTCGTGGGAATAGTTGAAGAATCATGAAAGCAGTCTAGCTAATCTTACATCCCTGCACTTTTGTTAATGCCCGTAGATTGATATTTCAATTCTTAAGAGTTGGTGGAAAAGAGATTTCAACTTCTTGGCTCCATTGGTTTTGTAGAATTTTGTTTTTTTTTCCTTGCGTTATCAATTTTTTGCTATTTTTGTAGACTTTTGGTTTATTTTCCTTGATGTTCTCAATTTATTTGCCTTCATTTTTAATCAGGATGTTGGTTTTGTCTGGTTTTTCTTTTTATTTATTTATTTATTATTATTATTATTATTTTGTTAGCAATGGAACATGGATCCTTTACAGATGAGACCAAATCAACATTTTCTATGGCTGATGAAGATCATACACTTGCAAATGCTCTCAGATACACTTTGAATCAAGAGTAGGAGCTCTTATTCAGTTATTCTTGAGTGAATACTTTGAAATGTCAACGCTCATTTTTTTAACCATTTCATCTTGCTATTAATTCATGACATTAATAATTAAGTAGATTCTTGGTTCTTGTGAACATATAATTCACAAGGTCCTTAAAGAATTATTTAGGTTCTTGGATAATCCATGAGGCATAAATTGATAAATAATGTACAGCCATTGCATGCGTTAATGTGCGTTCTTTCATTGTCCATCCAGAAGAGTTATAAATATGTTGACATTTTTTTTCACCTATTAGAGCAATAGGAATTGATCATTTGGTTGTGGTTTCTTTCCCCTGTTAAAAAAAGCTGGTTTAGATTGTTGTTATACTTTAGTAAACCATATCTGATATACTTTTAAATAACTTGCAATATCATCTGGCAGTCCAAGAGTGACATTCTGTGGGTACAGCATCCCTCATCCTTCAGATAATCGAGTTAATATTAGAGTCCAGACAACAGGTAATATTTTAGGTTGTTCGACTCTCTAATTGGTTCACATTTCAGGAATTTTTTTCTAATGATTGGATTTGTTCTATCTTGATTTTTCTTCTTTATTTACATCTAATTTATGCATTCATGAGATATATAGCTTTTGGATCCATGCGAAGTCCGATCCTTGTAAGAAATTTTTTTTCCAACAAAGTCGCCTTTTTTTTTAGAACACATGTTGGATCCTTGTAGCTTTGCTAGAACCCGTTATTAAATTAAATAGAACTCAAGTAGACAGTTCTACAACATATAGAACTGACCCTGTTCAAGTAAGGTCATGGTAAAAAATAAATTTTAGTACTTGAACTTAGGGTTCTATAACTTTAACAAGATTCAATTATTTGTCCAAAATTTGAATAGCTATTGTACGGAGTTCTTACCATCAACACTGGTAACTCACATTGACATGATATATGTATTCGACAAATATTAGTTGATTAGGTGTAACATGACAGAAAAATAGTAGGAAGTATATAACTATAGAAAATAATATTAGCACATAAAAGGGATTTGATACGTTGCTTTGAAAAGATAGTATATTGCATATGCTTGTTTATTTTATTCAATTATCCACTTTTTTCCGCATTACAATGTTAATAAGTATGACTACACATTATTAATTACACTTCAAAGTTTGAAAGCCATATTTAGAACTTTTTAAAATGATAATATACCTATTAGGTACAGTAGATCTCAAGAACATAGTTGTACAACCTAGAGAATAGATCCTATTCAAGTAGGGTCATAGATCTATAATTTAATCTTAAACATATATGCATGCCCATTTGCAATTGTAAAGTAAAACCCAACGTACCAAGATGTTTGAGGTTGAGGCCTAAACAAATAGTGTCACGAATGAATGGTCTTTACTCTTTCTCCATGGTTGGATTTGTTGAACCCAGTGATCTGCAGTTGAAAGTAGACAAAGCTATTATTGATTACTAGGGAAAAGCAAAGCACATGGGAAAATGGTAGGGGCAATATAGCAAACAGAAGGCTATTTATTGAAGTGACTATGCATTATTAGTAGCATTAGTAATAGCATTAGTGATCACTGATGAAAGGGGTTTCTGATTGAACATGGCAGGTGATCCTGCTAGAGAAGTTTTGAAAGATGCTTGTCAGAACTTGATGGTGGTGTGTCAGCATGTGAGGAACACATTTGACAAGGCTGTGCTTGATTTCAATCTCACCAAAGCAAAAGAAGAACCTGAGGGAGACATTAATATCGAATAGAATGGGACCTTTGTTTTTTCTTTGCCTTGTAATTTTACCCTTTTTTTTTTTGTTAGTTTACAGTTTATTGAGATGGGTTTGTTAGAAACAGATTAATTCCATTGAATTTTGCTTGCGTT

mRNA sequence

ATGGGCCGGATTACCGGCGCATTCAATCCCCCTTCGACAGTTCGACGTTCACATTTCGTAATCCCTTCGGCGATAAAATTCCGGCGACCTTTACATTCCGCCGGCGGCCTTTGCACATTTAGATCGTAAGTTCGACGGCACGATTCGCCTTTACACTTTCCAATCGCAAGTTCGACGGACTTCACATTCTGGGTTCTTCATCTTGTTTTGTCGGGTTCTTCATCTTGTTTTGTCCAAGCAATGGAACATGGATCCTTTACAGATGAGACCAAATCAACATTTTCTATGGCTGATGAAGATCATACACTTGCAAATGCTCTCAGATACACTTTGAATCAAGATCCAAGAGTGACATTCTGTGGGTACAGCATCCCTCATCCTTCAGATAATCGAGTTAATATTAGAGTCCAGACAACAGTGATCTGCAGTTGAAAGTAGACAAAGCTATTATTGATTACTAGGGAAAAGCAAAGCACATGGGAAAATGGTGATCCTGCTAGAGAAGTTTTGAAAGATGCTTGTCAGAACTTGATGGTGGTGTGTCAGCATGTGAGGAACACATTTGACAAGGCTGTGCTTGATTTCAATCTCACCAAAGCAAAAGAAGAACCTGAGGGAGACATTAATATCGAATAGAATGGGACCTTTGTTTTTTCTTTGCCTTGTAATTTTACCCTTTTTTTTTTTGTTAGTTTACAGTTTATTGAGATGGGTTTGTTAGAAACAGATTAATTCCATTGAATTTTGCTTGCGTT

Coding sequence (CDS)

ATGGAACATGGATCCTTTACAGATGAGACCAAATCAACATTTTCTATGGCTGATGAAGATCATACACTTGCAAATGCTCTCAGATACACTTTGAATCAAGATCCAAGAGTGACATTCTGTGGGTACAGCATCCCTCATCCTTCAGATAATCGAGTTAATATTAGAGTCCAGACAACAGTGATCTGCAGTTGA

Protein sequence

MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTVICS
Homology
[Close]
BLAST of MELO3C020585 vs. ExPASy Swiss-Prot
Match: P28000 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPC19 PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 4.1e-13
Identity = 31/51 (60.78%), Postives = 41/51 (80.39%), Query Frame = 0 

Query: 8   DETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQT 59
           D T ++F + +EDHTL NALRY + ++P V FCGYSIPHPS+N +NIR+QT
Sbjct: 57  DGTSASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQT 107

[Close]
BLAST of MELO3C020585 vs. ExPASy Swiss-Prot
Match: Q54ES6 (DNA-directed RNA polymerases I and III subunit rpc19 OS=Dictyostelium discoideum OX=44689 GN=rpc19 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 9.2e-13
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = 0 

Query: 12 STFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQT 59
          +TF   DEDHTL NAL Y L ++P+V F GYSIPHPSDNR+N+R+QT
Sbjct: 36 ATFIFTDEDHTLGNALHYVLMKNPKVDFSGYSIPHPSDNRMNLRIQT 82

[Close]
BLAST of MELO3C020585 vs. ExPASy Swiss-Prot
Match: Q09177 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpc19 PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 6.0e-12
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 0 

Query: 4  GSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQT 59
          G   D T  TF +  EDHTL N+LRY + ++P V FCGYSIPHPS+ ++N R+QT
Sbjct: 27 GHSADLTSVTFQIQKEDHTLGNSLRYVIMKNPEVEFCGYSIPHPSEAKMNFRIQT 81

[Close]
BLAST of MELO3C020585 vs. ExPASy Swiss-Prot
Match: Q5XK67 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Xenopus laevis OX=8355 GN=polr1d PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-10
Identity = 27/51 (52.94%), Postives = 39/51 (76.47%), Query Frame = 0 

Query: 8  DETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQT 59
          +E+  TF + +EDHTL N+LRY + ++P V FCGYSI HPS+ ++N R+QT
Sbjct: 20 EESCVTFVLHEEDHTLGNSLRYMVMKNPEVEFCGYSITHPSETKINFRIQT 70

[Close]
BLAST of MELO3C020585 vs. ExPASy Swiss-Prot
Match: Q1RMG8 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Bos taurus OX=9913 GN=POLR1D PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.5e-10
Identity = 27/58 (46.55%), Postives = 41/58 (70.69%), Query Frame = 0 

Query: 1  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQT 59
          M   + TD    TF + +EDHTL N+LRY + ++P V FCGY+  HPS++++N+R+QT
Sbjct: 29 MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQT 86

[Close]
BLAST of MELO3C020585 vs. NCBI nr
Match: KAA0031779.1 (DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis melo var. makuwa])

HSP 1 Score: 126.3 bits (316), Expect = 9.2e-26
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 

Query: 1  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT 60
          MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT
Sbjct: 1  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT 59

[Close]
BLAST of MELO3C020585 vs. NCBI nr
Match: XP_008457416.1 (PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis melo] >XP_008457417.1 PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis melo] >TYJ97352.1 DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis melo var. makuwa])

HSP 1 Score: 126.3 bits (316), Expect = 9.2e-26
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 

Query: 1  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT 60
          MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT
Sbjct: 1  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT 59

[Close]
BLAST of MELO3C020585 vs. NCBI nr
Match: XP_038893936.1 (DNA-directed RNA polymerases I and III subunit RPAC2 [Benincasa hispida])

HSP 1 Score: 126.3 bits (316), Expect = 9.2e-26
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 

Query: 1  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT 60
          MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT
Sbjct: 1  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT 59

[Close]
BLAST of MELO3C020585 vs. NCBI nr
Match: XP_023522054.1 (DNA-directed RNA polymerases I and III subunit RPAC2-like [Cucurbita pepo subsp. pepo] >XP_023524948.1 DNA-directed RNA polymerases I and III subunit RPAC2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 124.4 bits (311), Expect = 3.5e-25
Identity = 57/59 (96.61%), Postives = 59/59 (100.00%), Query Frame = 0 

Query: 1  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT 60
          MEHGSFTDETKSTFSMADEDHTLAN++RYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT
Sbjct: 1  MEHGSFTDETKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT 59

[Close]
BLAST of MELO3C020585 vs. NCBI nr
Match: XP_022150895.1 (DNA-directed RNA polymerases I and III subunit RPAC2 [Momordica charantia])

HSP 1 Score: 123.2 bits (308), Expect = 7.7e-25
Identity = 57/59 (96.61%), Postives = 59/59 (100.00%), Query Frame = 0 

Query: 1  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT 60
          MEHGSF+DE+KSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT
Sbjct: 1  MEHGSFSDESKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT 59

[Close]
BLAST of MELO3C020585 vs. ExPASy TrEMBL
Match: A0A1S3C5G1 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucumis melo OX=3656 GN=LOC103497108 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.4e-26
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 

Query: 1  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT 60
          MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT
Sbjct: 1  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT 59

[Close]
BLAST of MELO3C020585 vs. ExPASy TrEMBL
Match: A0A5A7SR68 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00190 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.4e-26
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 

Query: 1  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT 60
          MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT
Sbjct: 1  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT 59

[Close]
BLAST of MELO3C020585 vs. ExPASy TrEMBL
Match: A0A5D3BBZ7 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G001620 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.4e-26
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 

Query: 1  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT 60
          MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT
Sbjct: 1  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT 59

[Close]
BLAST of MELO3C020585 vs. ExPASy TrEMBL
Match: A0A0A0LUT5 (RNA_pol_L_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G095010 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.8e-25
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 0 

Query: 1  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT 60
          MEHGSFTDETKSTFS+ADEDHTLAN LRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT
Sbjct: 1  MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT 59

[Close]
BLAST of MELO3C020585 vs. ExPASy TrEMBL
Match: A0A6J1D9Q8 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Momordica charantia OX=3673 GN=LOC111018936 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.8e-25
Identity = 57/59 (96.61%), Postives = 59/59 (100.00%), Query Frame = 0 

Query: 1  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT 60
          MEHGSF+DE+KSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT
Sbjct: 1  MEHGSFSDESKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT 59

[Close]
BLAST of MELO3C020585 vs. TAIR 10
Match: AT2G29540.1 (RNApolymerase 14 kDa subunit )

HSP 1 Score: 88.2 bits (217), Expect = 2.6e-18
Identity = 39/59 (66.10%), Postives = 51/59 (86.44%), Query Frame = 0 

Query: 1  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT 60
          MEHGSFT+ + ++F++++EDHTLANA+R+ LNQDPRVT   Y+IPHPS  +VNIRVQTT
Sbjct: 1  MEHGSFTNVSHASFTLSEEDHTLANAVRFVLNQDPRVTVAAYTIPHPSLEQVNIRVQTT 59

[Close]
BLAST of MELO3C020585 vs. TAIR 10
Match: AT2G29540.2 (RNApolymerase 14 kDa subunit )

HSP 1 Score: 88.2 bits (217), Expect = 2.6e-18
Identity = 39/59 (66.10%), Postives = 51/59 (86.44%), Query Frame = 0 

Query: 1  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT 60
          MEHGSFT+ + ++F++++EDHTLANA+R+ LNQDPRVT   Y+IPHPS  +VNIRVQTT
Sbjct: 1  MEHGSFTNVSHASFTLSEEDHTLANAVRFVLNQDPRVTVAAYTIPHPSLEQVNIRVQTT 59

[Close]
BLAST of MELO3C020585 vs. TAIR 10
Match: AT3G52090.1 (DNA-directed RNA polymerase, RBP11-like )

HSP 1 Score: 50.1 bits (118), Expect = 7.8e-07
Identity = 22/59 (37.29%), Postives = 37/59 (62.71%), Query Frame = 0 

Query: 5  SFTDETK----STFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT 60
          S+  +TK    ++F++  EDHT+ N +R  L++D  V F GY +PHP   ++ +R+ TT
Sbjct: 20 SYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVRIHTT 78

[Close]
BLAST of MELO3C020585 vs. TAIR 10
Match: AT3G52090.2 (DNA-directed RNA polymerase, RBP11-like )

HSP 1 Score: 45.1 bits (105), Expect = 2.5e-05
Identity = 20/55 (36.36%), Postives = 34/55 (61.82%), Query Frame = 0 

Query: 5  SFTDETK----STFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIR 56
          S+  +TK    ++F++  EDHT+ N +R  L++D  V F GY +PHP   ++ +R
Sbjct: 20 SYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVR 74

[Close]
BLAST of MELO3C020585 vs. TAIR 10
Match: AT2G29540.3 (RNApolymerase 14 kDa subunit )

HSP 1 Score: 41.6 bits (96), Expect = 2.8e-04
Identity = 18/25 (72.00%), Postives = 20/25 (80.00%), Query Frame = 0 

Query: 35 PRVTFCGYSIPHPSDNRVNIRVQTT 60
          PRVT   Y+IPHPS  +VNIRVQTT
Sbjct: 52 PRVTVAAYTIPHPSLEQVNIRVQTT 76

The following BLAST results are available for this feature:
BLAST of MELO3C020585 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P280004.1e-1360.78DNA-directed RNA polymerases I and III subunit RPAC2 OS=Saccharomyces cerevisiae... [more]
Q54ES69.2e-1365.96DNA-directed RNA polymerases I and III subunit rpc19 OS=Dictyostelium discoideum... [more]
Q091776.0e-1254.55DNA-directed RNA polymerases I and III subunit RPAC2 OS=Schizosaccharomyces pomb... [more]
Q5XK671.1e-1052.94DNA-directed RNA polymerases I and III subunit RPAC2 OS=Xenopus laevis OX=8355 G... [more]
Q1RMG82.5e-1046.55DNA-directed RNA polymerases I and III subunit RPAC2 OS=Bos taurus OX=9913 GN=PO... [more]
BLAST of MELO3C020585 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0031779.19.2e-26100.00DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis melo var. makuwa][more]
XP_008457416.19.2e-26100.00PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis melo] >... [more]
XP_038893936.19.2e-26100.00DNA-directed RNA polymerases I and III subunit RPAC2 [Benincasa hispida][more]
XP_023522054.13.5e-2596.61DNA-directed RNA polymerases I and III subunit RPAC2-like [Cucurbita pepo subsp.... [more]
XP_022150895.17.7e-2596.61DNA-directed RNA polymerases I and III subunit RPAC2 [Momordica charantia][more]
BLAST of MELO3C020585 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3C5G14.4e-26100.00DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucumis melo OX=3656 GN=... [more]
A0A5A7SR684.4e-26100.00DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucumis melo var. makuwa... [more]
A0A5D3BBZ74.4e-26100.00DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucumis melo var. makuwa... [more]
A0A0A0LUT53.8e-2596.61RNA_pol_L_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G095010... [more]
A0A6J1D9Q83.8e-2596.61DNA-directed RNA polymerases I and III subunit RPAC2 OS=Momordica charantia OX=3... [more]
BLAST of MELO3C020585 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G29540.12.6e-1866.10RNApolymerase 14 kDa subunit [more]
AT2G29540.22.6e-1866.10RNApolymerase 14 kDa subunit [more]
AT3G52090.17.8e-0737.29DNA-directed RNA polymerase, RBP11-like [more]
AT3G52090.22.5e-0536.36DNA-directed RNA polymerase, RBP11-like [more]
AT2G29540.32.8e-0472.00RNApolymerase 14 kDa subunit [more]
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009025DNA-directed RNA polymerase, RBP11-like dimerisation domainPFAMPF13656RNA_pol_L_2coord: 12..59
e-value: 1.5E-22
score: 79.1
IPR036603RNA polymerase, RBP11-like subunitGENE3D3.30.1360.10coord: 2..61
e-value: 5.0E-24
score: 86.1
IPR036603RNA polymerase, RBP11-like subunitSUPERFAMILY55257RBP11-like subunits of RNA polymerasecoord: 8..59
NoneNo IPR availablePANTHERPTHR13946DNA-DIRECTED RNA POLYMERASE I,II,IIIcoord: 1..59
NoneNo IPR availablePANTHERPTHR13946:SF37SUBFAMILY NOT NAMEDcoord: 1..59
IPR008193DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved sitePROSITEPS01154RNA_POL_L_13KDcoord: 16..47
IPR033898DNA-directed RNA polymerases I and III subunit AC19CDDcd07029RNAP_I_III_AC19coord: 2..59
e-value: 7.22636E-31
score: 100.769

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C020585.1MELO3C020585.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0046983 protein dimerization activity