MELO3C020539 (gene) Melon (DHL92) v4

Overview
NameMELO3C020539
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
Descriptionprotein PSY1-like
Locationchr12: 661244 .. 663855 (+)
RNA-Seq ExpressionMELO3C020539
SyntenyMELO3C020539
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCATTCATTACTTTTCTCTTTTGTATTGAAAATAGAAGGTGAGGAGAGGTAGAGATATATATTAATGGCTTCTTCTTCTTCTTCTCCTCGACTTTCCTTTTACTTCTCTTTCTTACTTCTCCTCCTCCTCACTACCGCCATGGTAGCTTCTGCCGCTCGCCATGCACCTCCAATTCCAATTTCGAGCAATGAGAGTAAGAACGGAACCCTTTCCTAGTTCTTCTCTTCTTCACCTTTGTTCATTTTTCTTTCCTTTAATCTAAATTTGTCGTTTAACATAGGGGTATAAATGAGTAATTGGGTTGAGGGACATTTTTAATCCAACCTATATTTTCAACTTAGTTGGTTGACAACCCAAATAATCCGAATTATATTTCCAATCCAACCCAACTCAACCCTTAGGGGCCGTTTGGGGGAAGGGCTTGAGTTATGGGAGGTTAGGATTATGATAAACCTAGTGTTAAGATAAACCTAGGATTATAATAAAATGTGTTTGGGGGATGGGTTATGGAGGAAGTGTTATGATAAGATGTGTTTGGGGGAAGGGTTATGAAGGAGGTGTTATGATAATGTTGTGATAAGATGTGTTTGGGAGAATGGTTATGTGGGTAGTATTAAGGAAGAGTTGAAGAAGAGTTAAGGAAAAGTTGAAGAAGGGTTAAGAAGTGTTGAAGAAGGATTGGGGAAAAGTTGAAGAAGGGTTAAGAAGTGTTGAAGAAGAGTTAAGGAGTTAAAACTAGGGTTACATGACCCTTCCCCCAAACGGGGGTTGGATTACATAACCCTAATCTCCATAATCCAACCCTTAATGGTTGGGTTGAGTTAGTATTTTTTTTTTCATTCCTAATTTTTACGATTTAAAATTGTTGTACGACAACGATAAATACTCACATCCAAAGATTCAAACATCCATGAATTCAAAGTTTCAAATATTTACAAAAGTTTAACATTCCAAACATTATTGTAATATTAAATAAACAATAAAATATCTATAATATAAATATAAATAAATATAGATATATTTTTAATTCAGGTTGGGTTGACACAAATTTTCCAACACCTAACCGAAGACCTAATTCGACAAAAATCAAAATTTTCAATCTAACTCATATAATATGGGTTGGATAGTATTGATTGTCAGATTATTTGGGTTATTCTTACACACTTAATATAACTTTTTTTTTTTTTTTTAATTTGATAGTTTAACGTAGTATACGAGACATGATATCTATTCCGATTTTTTGAAGATAGAACTTTTGCATTCTTGGTTTATAAAATAATGGTTGAACTTGTCGGATTTTTTTTGTTCCAATGCATACAACTGATTAAAGATGTTTGGCCTCTCAATTTAATTTTTACGTAGAATCAGGGAAAATAAAATTCTGGTTATTTTGCATTTCGAATTTCAGAGTTTCATTAAGTCAAAATTTATTCTTTTTACTTTAAATTGATTTTATATTTAATCATTCAAAGTTAATAATTTTCTAGATGGTCATCAAATAATAATAAATTTTGTAAAAACATAAAATAATATTATACGTGTTTGAATTCTAAAGATTTATAAAAAACCTAAGTAGCAAACAATATTTTTATATTTGGAAAAAGCAACATCGTGATTAAAATCAACAAAAAGTACTATTATTCTTAAGATTTACCGATAGTATTAAAAAAAAAAATATTCGAAAGTACATGAAATAAAACTCGAAATTAAATTAAAATAGTATGTATTTTAGGTATTATATTAAAAATTTAACATGGTGTCAAAATAGAAGGTTTTGAGTAATTTGTCATGTCATATACTTTCATATGTACATATATGATAATTAACCTAAGGTCTTAATGTTTAATTTTCAAGCTTTATAAACTATTGAACTTGTTTTATGGATTTATAGGTAATTTAATATGATTAATTATAAAGTTTTATGGTTAATTAAAAATGTATATATGTAGGAAATGATGAAGGGATGATTGGGTTACAAGACTATGGTGATGCACGTGCCAATCATAGACATGATCCTCACCATCCTCTAACTGTCAACAAAGGTAAGTTTCACCGTAGACATACCTATAATTGATGAATGGAAAATATACTCTTCAACTGTTTCGAGTCTCGTCACTTATTCTATATAAATATAGATTATTACTCGAGTGATGAAACTAATTGGTATATCATTGAATGCATGAGATGAGATTTTTTATTTATTTGGTTTCTTAATGGCTTAGAGTACAAGTCTCTAACTAAATTATTATTATTTAGATTATTAGTGACTTTATCTATTTAAATAAATGTATAAAAACTATGTGGTGAAGTTCTTTCGTACAAAAGAAAACCATACATTCTTGTAAATATAATATTTTTATACTTAATTGTACTCGAAATAAAACTATGAAAGTTTTTAATACATTCAAAGAGGTTGAAGTTGTTGATATTTCATATATATACTTACGATTATAGCAAATCACCTAATAAAATTTGTTGTTATAATTATTATTTATTGATTTTTTTTTGTAGGGAACAAGAAGGAATTGGATGGTTAATGAGAATTAGAGGATATTATAATGGCATTATGATCAAGTGGTGGAAGCAACTATTTGGTGTGTGTTGAGATAA

mRNA sequence

TCCATTCATTACTTTTCTCTTTTGTATTGAAAATAGAAGGTGAGGAGAGGTAGAGATATATATTAATGGCTTCTTCTTCTTCTTCTCCTCGACTTTCCTTTTACTTCTCTTTCTTACTTCTCCTCCTCCTCACTACCGCCATGGTAGCTTCTGCCGCTCGCCATGCACCTCCAATTCCAATTTCGAGCAATGAGAGAAATGATGAAGGGATGATTGGGTTACAAGACTATGGTGATGCACGTGCCAATCATAGACATGATCCTCACCATCCTCTAACTGTCAACAAAGGGAACAAGAAGGAATTGGATGGTTAATGAGAATTAGAGGATATTATAATGGCATTATGATCAAGTGGTGGAAGCAACTATTTGGTGTGTGTTGAGATAA

Coding sequence (CDS)

ATGGCTTCTTCTTCTTCTTCTCCTCGACTTTCCTTTTACTTCTCTTTCTTACTTCTCCTCCTCCTCACTACCGCCATGGTAGCTTCTGCCGCTCGCCATGCACCTCCAATTCCAATTTCGAGCAATGAGAGAAATGATGAAGGGATGATTGGGTTACAAGACTATGGTGATGCACGTGCCAATCATAGACATGATCCTCACCATCCTCTAACTGTCAACAAAGGGAACAAGAAGGAATTGGATGGTTAA

Protein sequence

MASSSSSPRLSFYFSFLLLLLLTTAMVASAARHAPPIPISSNERNDEGMIGLQDYGDARANHRHDPHHPLTVNKGNKKELDG
Homology
BLAST of MELO3C020539 vs. NCBI nr
Match: XP_008457363.1 (PREDICTED: protein PSY1-like [Cucumis melo])

HSP 1 Score: 163.3 bits (412), Expect = 8.8e-37
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0

Query: 1  MASSSSSPRLSFYFSFLLLLLLTTAMVASAARHAPPIPISSNERNDEGMIGLQDYGDARA 60
          MASSSSSPRLSFYFSFLLLLLLTTAMVASAARHAPPIPISSNERNDEGMIGLQDYGDARA
Sbjct: 1  MASSSSSPRLSFYFSFLLLLLLTTAMVASAARHAPPIPISSNERNDEGMIGLQDYGDARA 60

Query: 61 NHRHDPHHPLTVNKGNKKELDG 83
          NHRHDPHHPLTVNKGNKKELDG
Sbjct: 61 NHRHDPHHPLTVNKGNKKELDG 82

BLAST of MELO3C020539 vs. NCBI nr
Match: KGN65819.1 (hypothetical protein Csa_023229 [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 4.7e-30
Identity = 72/83 (86.75%), Postives = 77/83 (92.77%), Query Frame = 0

Query: 1  MASSSS-SPRLSFYFSFLLLLLLTTAMVASAARHAPPIPISSNERNDEGMIGLQDYGDAR 60
          MASSSS  PRLSFYFSFL+LLLL TAMVASAARHAP IP+SSN+RND+ MIGLQDYGDAR
Sbjct: 1  MASSSSPPPRLSFYFSFLILLLLATAMVASAARHAPAIPVSSNKRNDKEMIGLQDYGDAR 60

Query: 61 ANHRHDPHHPLTVNKGNKKELDG 83
          ANHRHDPHHPL+VNKGN KELDG
Sbjct: 61 ANHRHDPHHPLSVNKGNNKELDG 83

BLAST of MELO3C020539 vs. NCBI nr
Match: KAG6607316.1 (hypothetical protein SDJN03_00658, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 86.3 bits (212), Expect = 1.4e-13
Identity = 50/74 (67.57%), Postives = 57/74 (77.03%), Query Frame = 0

Query: 9  RLSFYFSFLLLLLLTTAMVA-SAARHAPPIPISSNERNDEGMIGLQDYGDARANHRHDPH 68
          R S YFS L  LL T A+VA S AR+ P  PI+S ER+DE MIGL+DYGDARANHRH+PH
Sbjct: 4  RSSLYFSLLFFLLSTAAIVAPSEARNIPASPIASTERHDE-MIGLRDYGDARANHRHEPH 63

Query: 69 HPLTVNKGNKKELD 82
          HPL V +G KKELD
Sbjct: 64 HPLGV-EGYKKELD 75

BLAST of MELO3C020539 vs. NCBI nr
Match: XP_022998316.1 (uncharacterized protein LOC111492989 [Cucurbita maxima])

HSP 1 Score: 84.7 bits (208), Expect = 4.0e-13
Identity = 53/82 (64.63%), Postives = 60/82 (73.17%), Query Frame = 0

Query: 1  MASSSSSPRLSFYFSFLLLLLLTTAMVAS-AARHAPPIPISSNERNDEGMIGLQDYGDAR 60
          MAS S     S YFS L  LL T A+VA+  AR+ P  PISS ER+DE MIGL+DYGDAR
Sbjct: 1  MASQS-----SLYFSLLFFLLSTAAIVAAFEARNIPANPISSTERHDE-MIGLRDYGDAR 60

Query: 61 ANHRHDPHHPLTVNKGNKKELD 82
          ANHRH+PHHPL V +G KKELD
Sbjct: 61 ANHRHEPHHPLGV-EGYKKELD 75

BLAST of MELO3C020539 vs. NCBI nr
Match: XP_022150920.1 (uncharacterized protein LOC111018956 [Momordica charantia])

HSP 1 Score: 79.0 bits (193), Expect = 2.2e-11
Identity = 49/101 (48.51%), Postives = 56/101 (55.45%), Query Frame = 0

Query: 9   RLSFYFSFLLLLLLTTAMVASAARHAPPIP---------ISSNER--------------- 68
           RLS YFS L+LLL T ++V+SAARHAP            +  +ER               
Sbjct: 4   RLSLYFSLLILLLATASIVSSAARHAPATSSKLARNGGMVEIHERFAKSRVEDNSMVHHR 63

Query: 69  ---NDEGMIGLQDYGDARANHRHDPHHPLTVNKGNKKELDG 83
                E MIGL DYGD  ANH+HDPHHPL V KGN KELDG
Sbjct: 64  LLTGHEEMIGLHDYGDTHANHKHDPHHPLAV-KGNNKELDG 103

BLAST of MELO3C020539 vs. ExPASy TrEMBL
Match: A0A1S3C5B4 (protein PSY1-like OS=Cucumis melo OX=3656 GN=LOC103497069 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 4.3e-37
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0

Query: 1  MASSSSSPRLSFYFSFLLLLLLTTAMVASAARHAPPIPISSNERNDEGMIGLQDYGDARA 60
          MASSSSSPRLSFYFSFLLLLLLTTAMVASAARHAPPIPISSNERNDEGMIGLQDYGDARA
Sbjct: 1  MASSSSSPRLSFYFSFLLLLLLTTAMVASAARHAPPIPISSNERNDEGMIGLQDYGDARA 60

Query: 61 NHRHDPHHPLTVNKGNKKELDG 83
          NHRHDPHHPLTVNKGNKKELDG
Sbjct: 61 NHRHDPHHPLTVNKGNKKELDG 82

BLAST of MELO3C020539 vs. ExPASy TrEMBL
Match: A0A0A0LXN0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532270 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.3e-30
Identity = 72/83 (86.75%), Postives = 77/83 (92.77%), Query Frame = 0

Query: 1  MASSSS-SPRLSFYFSFLLLLLLTTAMVASAARHAPPIPISSNERNDEGMIGLQDYGDAR 60
          MASSSS  PRLSFYFSFL+LLLL TAMVASAARHAP IP+SSN+RND+ MIGLQDYGDAR
Sbjct: 1  MASSSSPPPRLSFYFSFLILLLLATAMVASAARHAPAIPVSSNKRNDKEMIGLQDYGDAR 60

Query: 61 ANHRHDPHHPLTVNKGNKKELDG 83
          ANHRHDPHHPL+VNKGN KELDG
Sbjct: 61 ANHRHDPHHPLSVNKGNNKELDG 83

BLAST of MELO3C020539 vs. ExPASy TrEMBL
Match: A0A6J1K9X5 (uncharacterized protein LOC111492989 OS=Cucurbita maxima OX=3661 GN=LOC111492989 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.9e-13
Identity = 53/82 (64.63%), Postives = 60/82 (73.17%), Query Frame = 0

Query: 1  MASSSSSPRLSFYFSFLLLLLLTTAMVAS-AARHAPPIPISSNERNDEGMIGLQDYGDAR 60
          MAS S     S YFS L  LL T A+VA+  AR+ P  PISS ER+DE MIGL+DYGDAR
Sbjct: 1  MASQS-----SLYFSLLFFLLSTAAIVAAFEARNIPANPISSTERHDE-MIGLRDYGDAR 60

Query: 61 ANHRHDPHHPLTVNKGNKKELD 82
          ANHRH+PHHPL V +G KKELD
Sbjct: 61 ANHRHEPHHPLGV-EGYKKELD 75

BLAST of MELO3C020539 vs. ExPASy TrEMBL
Match: A0A6J1D9T4 (uncharacterized protein LOC111018956 OS=Momordica charantia OX=3673 GN=LOC111018956 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.1e-11
Identity = 49/101 (48.51%), Postives = 56/101 (55.45%), Query Frame = 0

Query: 9   RLSFYFSFLLLLLLTTAMVASAARHAPPIP---------ISSNER--------------- 68
           RLS YFS L+LLL T ++V+SAARHAP            +  +ER               
Sbjct: 4   RLSLYFSLLILLLATASIVSSAARHAPATSSKLARNGGMVEIHERFAKSRVEDNSMVHHR 63

Query: 69  ---NDEGMIGLQDYGDARANHRHDPHHPLTVNKGNKKELDG 83
                E MIGL DYGD  ANH+HDPHHPL V KGN KELDG
Sbjct: 64  LLTGHEEMIGLHDYGDTHANHKHDPHHPLAV-KGNNKELDG 103

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_008457363.18.8e-37100.00PREDICTED: protein PSY1-like [Cucumis melo][more]
KGN65819.14.7e-3086.75hypothetical protein Csa_023229 [Cucumis sativus][more]
KAG6607316.11.4e-1367.57hypothetical protein SDJN03_00658, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022998316.14.0e-1364.63uncharacterized protein LOC111492989 [Cucurbita maxima][more]
XP_022150920.12.2e-1148.51uncharacterized protein LOC111018956 [Momordica charantia][more]
Match NameE-valueIdentityDescription
A0A1S3C5B44.3e-37100.00protein PSY1-like OS=Cucumis melo OX=3656 GN=LOC103497069 PE=4 SV=1[more]
A0A0A0LXN02.3e-3086.75Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532270 PE=4 SV=1[more]
A0A6J1K9X51.9e-1364.63uncharacterized protein LOC111492989 OS=Cucurbita maxima OX=3661 GN=LOC111492989... [more]
A0A6J1D9T41.1e-1148.51uncharacterized protein LOC111018956 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..82
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..82

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C020539.1MELO3C020539.1mRNA