MELO3C020447 (gene) Melon (DHL92) v4

Overview


Name	MELO3C020447
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Small EDRK-rich factor 2
Location	chr05: 8389520 .. 8390398 (-)
RNA-Seq Expression	MELO3C020447
Synteny	MELO3C020447

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATTACCTTTGGTTGACTCTCTGTTTTTAGAGATTGGAATTCTTCGTTTCTTCGGCTAAGTCTCCACCCCAATCCTCCAATTCTACATCTTTCTTCACCACCCACTTCATTAATCTCCCTCCAATGACTCATATCCTTCTCAATCTTCAATTCTTTTTCATCTTTTTTATGTCGATTTTCCATGAACTTGTGCTTTCTTTTCTTTTCTTTTCTTTTCTTTTAAGGCGTTTTTGATTCATTGATTTTGTAAATTTCTTCTTCTTTCAAGTTTGTTTCCCTTGACTCAGATCTCTACGTGGAAACCAGAGGGAGAAAGACCGAGAAAGGGCTCAGGCTCGCAACGGTGGCAAGGGTAAAACCAAAGACGATGGTTTGACTCCCGAGCAGCGCCGTGAAAGGTTTTCTTTTATCTTCTATCCTCTACCTTCGTTAATTTTCCCTTTTGTTTCGATCTGGGTTTCTTTTTATTCGTTTTCGATTTTGGTTTAGAGATGCTAAGGCGCTGCAAGAAAAAGCCGCGAAGAAGGCGGCTCAGGCGGCATCAGGAGGTAATTCATCCGGAGGTAAAGCTAGCACTAAGAAGTAAAATGGTCCTGGGTTTAGAATCATGGATTATGTTGATTTTTCTTAGCTTTGTTCTTGTTGGAACGCCGAGATCTCGTGGTTCTTAGACTGTTTGATATTGGAGGAGTAACCTTCATATGTTTCAGTAATGTGAATTGATATATGTATTATGCTGTCAACGTTCATTGTTGATTATTGTTTTTCATCATCTTAGTACTCTTGATCTTTACTTCTGTTGAGGTAACTATGCTGTCAATTGCGGATTTTGTTGAGATTGGATCCTAATGAAAAATTCTTGTTCATATGTTATGATAT

mRNA sequence

GATTACCTTTGGTTGACTCTCTGTTTTTAGAGATTGGAATTCTTCGTTTCTTCGGCTAAGTCTCCACCCCAATCCTCCAATTCTACATCTTTCTTCACCACCCACTTCATTAATCTCCCTCCAATGACTCATATCCTTCTCAATCTTCAATTCTTTTTCATCTTTTTTATATCTCTACGTGGAAACCAGAGGGAGAAAGACCGAGAAAGGGCTCAGGCTCGCAACGGTGGCAAGGGTAAAACCAAAGACGATGGTTTGACTCCCGAGCAGCGCCGTGAAAGAGATGCTAAGGCGCTGCAAGAAAAAGCCGCGAAGAAGGCGGCTCAGGCGGCATCAGGAGGTAATTCATCCGGAGGTAAAGCTAGCACTAAGAAGTAAAATGGTCCTGGGTTTAGAATCATGGATTATGTTGATTTTTCTTAGCTTTGTTCTTGTTGGAACGCCGAGATCTCGTGGTTCTTAGACTGTTTGATATTGGAGGAGTAACCTTCATATGTTTCAGTAATGTGAATTGATATATGTATTATGCTGTCAACGTTCATTGTTGATTATTGTTTTTCATCATCTTAGTACTCTTGATCTTTACTTCTGTTGAGGTAACTATGCTGTCAATTGCGGATTTTGTTGAGATTGGATCCTAATGAAAAATTCTTGTTCATATGTTATGATAT

Coding sequence (CDS)

ATGACTCATATCCTTCTCAATCTTCAATTCTTTTTCATCTTTTTTATATCTCTACGTGGAAACCAGAGGGAGAAAGACCGAGAAAGGGCTCAGGCTCGCAACGGTGGCAAGGGTAAAACCAAAGACGATGGTTTGACTCCCGAGCAGCGCCGTGAAAGAGATGCTAAGGCGCTGCAAGAAAAAGCCGCGAAGAAGGCGGCTCAGGCGGCATCAGGAGGTAATTCATCCGGAGGTAAAGCTAGCACTAAGAAGTAA

Protein sequence

MTHILLNLQFFFIFFISLRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSSGGKASTKK

Homology

[Close]

BLAST of MELO3C020447 vs. NCBI nr
Match: TYK21602.1 (small EDRK-rich factor 2 [Cucumis melo var. makuwa])

HSP 1 Score: 150.6 bits (379), Expect = 6.0e-33
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  MTHILLNLQFFFIFFISLRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQE 60
          MTHILLNLQFFFIFFISLRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQE
Sbjct: 1  MTHILLNLQFFFIFFISLRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQE 60

Query: 61 KAAKKAAQAASGGNSSGGKASTKK 85
          KAAKKAAQAASGGNSSGGKASTKK
Sbjct: 61 KAAKKAAQAASGGNSSGGKASTKK 84

[Close]

BLAST of MELO3C020447 vs. NCBI nr
Match: KAA0033303.1 (small EDRK-rich factor 2 [Cucumis melo var. makuwa])

HSP 1 Score: 120.6 bits (301), Expect = 6.7e-24
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 17 SLRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSS 76
          SLRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSS
Sbjct: 15 SLRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSS 74

Query: 77 GGKASTKK 85
          GGKASTKK
Sbjct: 75 GGKASTKK 82

[Close]

BLAST of MELO3C020447 vs. NCBI nr
Match: XP_008457241.1 (PREDICTED: small EDRK-rich factor 2 [Cucumis melo])

HSP 1 Score: 117.1 bits (292), Expect = 7.4e-23
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 19 RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSSGG 78
          RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSSGG
Sbjct: 3  RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSSGG 62

Query: 79 KASTKK 85
          KASTKK
Sbjct: 63 KASTKK 68

[Close]

BLAST of MELO3C020447 vs. NCBI nr
Match: XP_038876165.1 (small EDRK-rich factor 2 [Benincasa hispida])

HSP 1 Score: 112.5 bits (280), Expect = 1.8e-21
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 19 RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSSGG 78
          RGNQREKDRER+QARN GKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSSGG
Sbjct: 3  RGNQREKDRERSQARNSGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSSGG 62

Query: 79 KASTKK 85
          K+STKK
Sbjct: 63 KSSTKK 68

[Close]

BLAST of MELO3C020447 vs. NCBI nr
Match: KAG7013429.1 (hypothetical protein SDJN02_23595, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 112.1 bits (279), Expect = 2.4e-21
Identity = 64/68 (94.12%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 17  SLRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSS 76
           SLRGNQREKDRERAQAR GGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAAS GNSS
Sbjct: 106 SLRGNQREKDRERAQARTGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASEGNSS 165

Query: 77  GGKASTKK 85
           GGK+S KK
Sbjct: 166 GGKSSAKK 173

[Close]

BLAST of MELO3C020447 vs. ExPASy TrEMBL
Match: A0A5D3DDD9 (Small EDRK-rich factor 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold275G001070 PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.9e-33
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  MTHILLNLQFFFIFFISLRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQE 60
          MTHILLNLQFFFIFFISLRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQE
Sbjct: 1  MTHILLNLQFFFIFFISLRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQE 60

Query: 61 KAAKKAAQAASGGNSSGGKASTKK 85
          KAAKKAAQAASGGNSSGGKASTKK
Sbjct: 61 KAAKKAAQAASGGNSSGGKASTKK 84

[Close]

BLAST of MELO3C020447 vs. ExPASy TrEMBL
Match: A0A5A7SS85 (Small EDRK-rich factor 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G001140 PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.2e-24
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 17 SLRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSS 76
          SLRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSS
Sbjct: 15 SLRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSS 74

Query: 77 GGKASTKK 85
          GGKASTKK
Sbjct: 75 GGKASTKK 82

[Close]

BLAST of MELO3C020447 vs. ExPASy TrEMBL
Match: A0A1S3C551 (small EDRK-rich factor 2 OS=Cucumis melo OX=3656 GN=LOC103496966 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.6e-23
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 19 RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSSGG 78
          RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSSGG
Sbjct: 3  RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSSGG 62

Query: 79 KASTKK 85
          KASTKK
Sbjct: 63 KASTKK 68

[Close]

BLAST of MELO3C020447 vs. ExPASy TrEMBL
Match: A0A0A0LHU5 (4F5 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G138790 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.4e-21
Identity = 62/66 (93.94%), Postives = 62/66 (93.94%), Query Frame = 0


Query: 19 RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSSGG 78
          RGNQREKDRERAQARNGGKGK KDDGLTPEQRRERDAKALQEK AKKAAQA SGGNSSGG
Sbjct: 3  RGNQREKDRERAQARNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAGSGGNSSGG 62

Query: 79 KASTKK 85
          K STKK
Sbjct: 63 KPSTKK 68

[Close]

BLAST of MELO3C020447 vs. ExPASy TrEMBL
Match: A0A6J1KZW7 (small EDRK-rich factor 2-like OS=Cucurbita maxima OX=3661 GN=LOC111499109 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.3e-20
Identity = 62/66 (93.94%), Postives = 63/66 (95.45%), Query Frame = 0


Query: 19 RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSSGG 78
          RGNQREKDRERAQAR GGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAAS GNSSGG
Sbjct: 3  RGNQREKDRERAQARTGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASEGNSSGG 62

Query: 79 KASTKK 85
          K+S KK
Sbjct: 63 KSSAKK 68

[Close]

BLAST of MELO3C020447 vs. TAIR 10
Match: AT3G24100.1 (Uncharacterised protein family SERF )

HSP 1 Score: 87.8 bits (216), Expect = 4.5e-18
Identity = 49/60 (81.67%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 19 RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSSGG 78
          RG+QRE+DRERA AR GGKGK KDDGLTPEQRRERDAKALQEK AKKAAQAA+  +S GG
Sbjct: 3  RGSQRERDRERALARTGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAAAAASSGGG 62

[Close]

BLAST of MELO3C020447 vs. TAIR 10
Match: AT4G13615.1 (Uncharacterised protein family SERF )

HSP 1 Score: 83.6 bits (205), Expect = 8.4e-17
Identity = 51/68 (75.00%), Postives = 56/68 (82.35%), Query Frame = 0


Query: 19 RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQA--ASGGNSS 78
          RG+QRE+DRERA AR GGKGK  DDGLTPEQRRERD KALQEKAAKKAAQA  AS G ++
Sbjct: 3  RGSQRERDRERAAARAGGKGKNGDDGLTPEQRRERDGKALQEKAAKKAAQAAGASSGGAA 62

Query: 79 GGKASTKK 85
          GGK +  K
Sbjct: 63 GGKGAAAK 70

The following BLAST results are available for this feature:

BLAST of MELO3C020447 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK21602.1	6.0e-33	100.00	small EDRK-rich factor 2 [Cucumis melo var. makuwa]	[more]
KAA0033303.1	6.7e-24	100.00	small EDRK-rich factor 2 [Cucumis melo var. makuwa]	[more]
XP_008457241.1	7.4e-23	100.00	PREDICTED: small EDRK-rich factor 2 [Cucumis melo]	[more]
XP_038876165.1	1.8e-21	95.45	small EDRK-rich factor 2 [Benincasa hispida]	[more]
KAG7013429.1	2.4e-21	94.12	hypothetical protein SDJN02_23595, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of MELO3C020447 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C020447 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DDD9	2.9e-33	100.00	Small EDRK-rich factor 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7SS85	3.2e-24	100.00	Small EDRK-rich factor 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A1S3C551	3.6e-23	100.00	small EDRK-rich factor 2 OS=Cucumis melo OX=3656 GN=LOC103496966 PE=3 SV=1	[more]
A0A0A0LHU5	4.4e-21	93.94	4F5 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G138790 PE=3 SV...	[more]
A0A6J1KZW7	1.3e-20	93.94	small EDRK-rich factor 2-like OS=Cucurbita maxima OX=3661 GN=LOC111499109 PE=3 S...	[more]

BLAST of MELO3C020447 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G24100.1	4.5e-18	81.67	Uncharacterised protein family SERF	[more]
AT4G13615.1	8.4e-17	75.00	Uncharacterised protein family SERF	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007513	Uncharacterised protein family SERF, N-terminal	PFAM	PF04419	4F5	coord: 19..51 e-value: 1.9E-8 score: 35.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..84
None	No IPR available	PANTHER	PTHR13596:SF8	BNAC08G08770D PROTEIN	coord: 18..83
IPR040211	Small EDRK-rich factor 1/2	PANTHER	PTHR13596	SMALL EDRK-RICH FACTOR 1	coord: 18..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020447.1	MELO3C020447.1	mRNA