MELO3C020323.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C020323.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr06: 13876046 .. 13876323 (-)
RNA-Seq ExpressionMELO3C020323.jh1
SyntenyMELO3C020323.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTTGTCTCGATTTGCGGCTCGACTCGCGGAATCGGCTAGGATGGAGGAACGACTCACGACAGGAGCTTTTCACGCTTTGGATTGTCCACACTACGGCTTAGGTCCTTCTCGACTTCGTCGGACGACGTACGAGGGAGGTGAGGCAACGACGCGAACAAAGGAGCGACAACGAGCGGCTGAATCGCAAGGATGCATCAGCATCTATCGCGGGGTTTGGGCAGAAACTGCCGATCGAAGTCGAAAAAAGAAGTTTGGGAATGGAAGGGGGCGACGCTGA

mRNA sequence

GCTTGTCTCGATTTGCGGCTCGACTCGCGGAATCGGCTAGGATGGAGGAACGACTCACGACAGGAGCTTTTCACGCTTTGGATTGTCCACACTACGGCTTAGGTCCTTCTCGACTTCGTCGGACGACGTACGAGGGAGGTGAGGCAACGACGCGAACAAAGGAGCGACAACGAGCGGCTGAATCGCAAGGATGCATCAGCATCTATCGCGGGGTTTGGGCAGAAACTGCCGATCGAAGTCGAAAAAAGAAGTTTGGGAATGGAAGGGGGCGACGCTGA

Coding sequence (CDS)

ATGGAGGAACGACTCACGACAGGAGCTTTTCACGCTTTGGATTGTCCACACTACGGCTTAGGTCCTTCTCGACTTCGTCGGACGACGTACGAGGGAGGTGAGGCAACGACGCGAACAAAGGAGCGACAACGAGCGGCTGAATCGCAAGGATGCATCAGCATCTATCGCGGGGTTTGGGCAGAAACTGCCGATCGAAGTCGAAAAAAGAAGTTTGGGAATGGAAGGGGGCGACGCTGA

Protein sequence

MEERLTTGAFHALDCPHYGLGPSRLRRTTYEGGEATTRTKERQRAAESQGCISIYRGVWAETADRSRKKKFGNGRGRR
Homology
[Close]
BLAST of MELO3C020323.jh1 vs. NCBI nr
Match: KAA0048085.1 (hypothetical protein E6C27_scaffold385G001590 [Cucumis melo var. makuwa])

HSP 1 Score: 50.4 bits (119), Expect = 3.50e-05
Identity = 23/30 (76.67%), Postives = 23/30 (76.67%), Query Frame = 0 

Query: 1   MEERLTTGAFHALDCPHYGLGPSRLRRTTY 30
           MEERL T A HALDCP Y  GPSRL RTTY
Sbjct: 89  MEERLATRAVHALDCPRYDSGPSRLHRTTY 118

[Close]
BLAST of MELO3C020323.jh1 vs. NCBI nr
Match: KAA0040420.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 50.4 bits (119), Expect = 6.51e-05
Identity = 23/34 (67.65%), Postives = 23/34 (67.65%), Query Frame = 0 

Query: 1   MEERLTTGAFHALDCPHYGLGPSRLRRTTYEGGE 34
           MEERL     HA DCP Y  GPSRLRR  YEGGE
Sbjct: 229 MEERLAVRVVHATDCPCYSSGPSRLRRMVYEGGE 262

[Close]
BLAST of MELO3C020323.jh1 vs. ExPASy TrEMBL
Match: A0A5A7U342 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G001590 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.69e-05
Identity = 23/30 (76.67%), Postives = 23/30 (76.67%), Query Frame = 0 

Query: 1   MEERLTTGAFHALDCPHYGLGPSRLRRTTY 30
           MEERL T A HALDCP Y  GPSRL RTTY
Sbjct: 89  MEERLATRAVHALDCPRYDSGPSRLHRTTY 118

[Close]
BLAST of MELO3C020323.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TAS6 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35G00450 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 3.15e-05
Identity = 23/34 (67.65%), Postives = 23/34 (67.65%), Query Frame = 0 

Query: 1   MEERLTTGAFHALDCPHYGLGPSRLRRTTYEGGE 34
           MEERL     HA DCP Y  GPSRLRR  YEGGE
Sbjct: 229 MEERLAVRVVHATDCPCYSSGPSRLRRMVYEGGE 262

The following BLAST results are available for this feature:
BLAST of MELO3C020323.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0048085.13.50e-0576.67hypothetical protein E6C27_scaffold385G001590 [Cucumis melo var. makuwa][more]
KAA0040420.16.51e-0567.65NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
BLAST of MELO3C020323.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C020323.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U3421.69e-0576.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TAS63.15e-0567.65NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
BLAST of MELO3C020323.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..45
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..47

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C020323.jh1.t1MELO3C020323.jh1.t1mRNA