MELO3C020227.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C020227.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	CACTA en-spm transposon protein
Location	chr06: 15871835 .. 15873242 (-)
RNA-Seq Expression	MELO3C020227.jh1
Synteny	MELO3C020227.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAAAAGACGTCAACACAAAGAACATCGAGAATAAGGGTATTTCCGACGCTGGACAGACGCGTCGTGAAAGCTGCGTCGAAGAAAATTCTATTCCCGACGCCTCGTACAATGTGTCAGGAGTGGCATCGGGAAAAAGGGTATTCCCAGCACGTCAAGCACACGTCGGTCAAACGGCGTCGAGAATACCCTTATTCTCGACGCGATAACAGGGATCTCCCAACGTATTCGTGCGGCATCGGGAGATCCTCTTTTTAAACGTTTTAGTTCTATTTTACACAGAACTGAAAACGAAATGGAAAGGGAGAAGAGAGAAACGAAGATTCGTCCATGTCCGTTCCGTCATCGCTGTCATCCCTCGCCGTCGTCCCTCGCCGTTCCGCCGCGGTCTGCCACCTTAGATAAGTTTGAATATAAAGTTTGTTTAGTTTAAATATAAGTTTTACGATTTTTTTTAAGAAAATTGTTTTAGGATTTTGTTTTGGAATAGATTTTTGTTTGTTAAATGTATTTTTGTATAGAATGTGTCTAATTTGTGGTTGAATTGAAATTTGAAGGATTTAGGGTTTAGGATTTGTAGTTAAATGGAAAATTGAGTGGGGAGGGATTTATAGTTAAATTGAAATTTGAAGGGTTTAGGGTTCAAGGTTTAGGGTTAATTTGAAATTTAAAAAGAGGATTACTAGCTAAATTGAAATTTAGAGGGGGTTACCAGTGGGTTTCTTTGCAATAATATGCTTTGTAGTTGAATTCAGTTTTTATTAAATAATGACACTTGTAAGCCTAATTAGTATATTCTGGCTAATATTTAGTTTAGTTGATAATTTAGATTATTTAGTTATTTTAATATCTTTTTTTTTGTAAGATCATCAAAGTTTTCATTTAAATATCTTTGTTGTTGATTTGAGATGACTATCCTGCAGTTATGGTAGCTTTTTTTGTTTTGAATTTGCTTCTGTTTAGGATGGTTTCAAGGGGTGGTAGTAAGATAGCTTGAAGTATTTTGTTGTTAATAATTAGGTTGTGTTGGCTATCCACGTAATAATTAGATTGTTTTCTATGTTCACAGCCATTATGTCATCGTCATACCCACGTAATAATTTTATGAAAACGGATGCTATGTTCCTTTAGTTTGAGGACGATTTAGATAACATCGCGGGAGGGTCGTTGTCTGAGGGCGACAATGCAGGTGAATCTAAGAATTTCCTTCATTTTAACTCATGATTATTTCATGTTTTTTTGCTAACACTATATGTTATTATCGATTTATTGAGCAGGGCCTTCTTCTCAACAACCTGCGACTCTGACTTTTAGGATACGTGCGCAGTCTCGACTCTTGGAGTTAGAGCATCACGTTGCAATAAATGGGCGCATTCCAATGACGATCGCCCCTAGAGCGAAGTGA

mRNA sequence

ATGGCAAAAAAGACGTCAACACAAAGAACATCGAGAATAAGGGTATTTCCGACGCTGGACAGACGCGTCGTGAAAGCTGCGTCGAAGAAAATTCTATTCCCGACGCCTCGTACAATGTGTCAGGAGTGGCATCGGGAAAAAGGGTATTCCCAGCACGTCAAGCACACGTCGGTCAAACGGCGTCGAGAATACCCTTATTCTCGACGCGATAACAGGGATCTCCCAACAACTGAAAACGAAATGGAAAGGGAGAAGAGAGAAACGAAGATTCGTCCATGTCCGTTCCGTCATCGCTGTCATCCCTCGCCGTCGTCCCTCGCCGTTCCGCCGCGGTCTGCCACCTTAGATAAGTTTGAATATAAAGTTTGTTTATTTGAGGACGATTTAGATAACATCGCGGGAGGGTCGTTGTCTGAGGGCGACAATGCAGGGCCTTCTTCTCAACAACCTGCGACTCTGACTTTTAGGATACGTGCGCAGTCTCGACTCTTGGAGTTAGAGCATCACGTTGCAATAAATGGGCGCATTCCAATGACGATCGCCCCTAGAGCGAAGTGA

Coding sequence (CDS)

ATGGCAAAAAAGACGTCAACACAAAGAACATCGAGAATAAGGGTATTTCCGACGCTGGACAGACGCGTCGTGAAAGCTGCGTCGAAGAAAATTCTATTCCCGACGCCTCGTACAATGTGTCAGGAGTGGCATCGGGAAAAAGGGTATTCCCAGCACGTCAAGCACACGTCGGTCAAACGGCGTCGAGAATACCCTTATTCTCGACGCGATAACAGGGATCTCCCAACAACTGAAAACGAAATGGAAAGGGAGAAGAGAGAAACGAAGATTCGTCCATGTCCGTTCCGTCATCGCTGTCATCCCTCGCCGTCGTCCCTCGCCGTTCCGCCGCGGTCTGCCACCTTAGATAAGTTTGAATATAAAGTTTGTTTATTTGAGGACGATTTAGATAACATCGCGGGAGGGTCGTTGTCTGAGGGCGACAATGCAGGGCCTTCTTCTCAACAACCTGCGACTCTGACTTTTAGGATACGTGCGCAGTCTCGACTCTTGGAGTTAGAGCATCACGTTGCAATAAATGGGCGCATTCCAATGACGATCGCCCCTAGAGCGAAGTGA

Protein sequence

MAKKTSTQRTSRIRVFPTLDRRVVKAASKKILFPTPRTMCQEWHREKGYSQHVKHTSVKRRREYPYSRRDNRDLPTTENEMEREKRETKIRPCPFRHRCHPSPSSLAVPPRSATLDKFEYKVCLFEDDLDNIAGGSLSEGDNAGPSSQQPATLTFRIRAQSRLLELEHHVAINGRIPMTIAPRAK

Homology

[Close]

BLAST of MELO3C020227.jh1 vs. NCBI nr
Match: TYK01603.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 126 bits (317), Expect = 1.41e-32
Identity = 68/82 (82.93%), Postives = 69/82 (84.15%), Query Frame = 0


Query: 104 SSLAVPPRSATLDKFEYKVCLFEDDLDNIAGGSLSEGDNAGPSSQQPATLTFRIRAQSRL 163
           SSLAV PR +           FEDDLDNIAGGSLSEGDNAGPSSQQPATLTFRIRAQSRL
Sbjct: 8   SSLAVVPRRSAA---------FEDDLDNIAGGSLSEGDNAGPSSQQPATLTFRIRAQSRL 67

Query: 164 LELEHHVAINGRIPMTIAPRAK 185
           LELEHHVAINGRIPMTIAPRAK
Sbjct: 68  LELEHHVAINGRIPMTIAPRAK 80

[Close]

BLAST of MELO3C020227.jh1 vs. NCBI nr
Match: KAA0054290.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK12327.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (280), Expect = 3.80e-27
Identity = 84/176 (47.73%), Postives = 96/176 (54.55%), Query Frame = 0


Query: 13  IRVFPTLDRRVVKAASKKILFPTPRTMCQEWH---REKGYSQHVKHTSVKRRREYPYSRR 72
           IRVFP  D+R VKAAS+K LF TPR M +E     + KG  +  +  +V+    +  S  
Sbjct: 4   IRVFPMPDKRAVKAASEKTLFSTPRIMLRERQLKTKGKGRREKQRFVAVRSSLSFILS-- 63

Query: 73  DNRDLPTTENEMEREKRETKIRPCPFRHRCHPSPSSLAVPPRSATLDKFEYKVCLFEDDL 132
                                           S SSLAVP +SATLD    +   FEDDL
Sbjct: 64  --------------------------------SLSSLAVPLQSATLDSMFLE---FEDDL 123

Query: 133 DNIAGGSLSEGDNAGPSSQQPATLTFRIRAQSRLLELEHHVAINGRIPMTIAPRAK 185
           DNIAGGS S GDNA  SSQQPATLT R  AQSRLLELE HVAING I MTI  RA+
Sbjct: 124 DNIAGGSSSVGDNAESSSQQPATLTSRRCAQSRLLELERHVAINGCILMTITLRAE 142

[Close]

BLAST of MELO3C020227.jh1 vs. NCBI nr
Match: TYK10969.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 90.5 bits (223), Expect = 1.88e-19
Identity = 47/61 (77.05%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 125 FEDDLDNIAGGSLSEGDNAGPSSQQPATLTFRIRAQSRLLELEHHVAINGRIPMTIAPRA 184
           FEDDLDNI GGS S GDN   SSQQP T T + RAQSRLLELE HVAINGRIPMTIAP A
Sbjct: 20  FEDDLDNIVGGSSSMGDNTESSSQQPVTPTPKRRAQSRLLELERHVAINGRIPMTIAPGA 79

[Close]

BLAST of MELO3C020227.jh1 vs. NCBI nr
Match: TYK27239.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 2.72e-19
Identity = 44/61 (72.13%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 125 FEDDLDNIAGGSLSEGDNAGPSSQQPATLTFRIRAQSRLLELEHHVAINGRIPMTIAPRA 184
           FED+LDN+ GGS   GDNAG +SQ PATLT + RAQ RLLELE H+A+NGRIPMTIAPRA
Sbjct: 5   FEDELDNLTGGSSFVGDNAGSTSQPPATLTPKRRAQFRLLELERHIAVNGRIPMTIAPRA 64

[Close]

BLAST of MELO3C020227.jh1 vs. NCBI nr
Match: KAA0040895.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 92.8 bits (229), Expect = 6.61e-19
Identity = 66/113 (58.41%), Postives = 73/113 (64.60%), Query Frame = 0


Query: 77  TENEMEREKRETKIRPCPF-RHRCHPSPSSL--AVPPRSATLDKFEYKVCLFEDDLDN-I 136
           TE E    +RE + R   F R R  PS +++  AV P SATL     +   FEDDLDN I
Sbjct: 40  TERESREGRRENRRRRSVFCRRRSPPSLAAVLAAVQPPSATLGDMFLQ---FEDDLDNNI 99

Query: 137 AGGSLSEGDNAGPSSQQPATLTFRIRAQSRLLELEHHVAINGRIPMTIAPRAK 185
           AGGS S GDN   SS Q AT T R RAQSRLLELE HVAINGRIPMTIAP A+
Sbjct: 100 AGGSSSVGDNTAESSSQQATPTPRRRAQSRLLELERHVAINGRIPMTIAPGAE 149

[Close]

BLAST of MELO3C020227.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BPH5 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001990 PE=4 SV=1)

HSP 1 Score: 126 bits (317), Expect = 6.81e-33
Identity = 68/82 (82.93%), Postives = 69/82 (84.15%), Query Frame = 0


Query: 104 SSLAVPPRSATLDKFEYKVCLFEDDLDNIAGGSLSEGDNAGPSSQQPATLTFRIRAQSRL 163
           SSLAV PR +           FEDDLDNIAGGSLSEGDNAGPSSQQPATLTFRIRAQSRL
Sbjct: 8   SSLAVVPRRSAA---------FEDDLDNIAGGSLSEGDNAGPSSQQPATLTFRIRAQSRL 67

Query: 164 LELEHHVAINGRIPMTIAPRAK 185
           LELEHHVAINGRIPMTIAPRAK
Sbjct: 68  LELEHHVAINGRIPMTIAPRAK 80

[Close]

BLAST of MELO3C020227.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CK72 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00970 PE=4 SV=1)

HSP 1 Score: 112 bits (280), Expect = 1.84e-27
Identity = 84/176 (47.73%), Postives = 96/176 (54.55%), Query Frame = 0


Query: 13  IRVFPTLDRRVVKAASKKILFPTPRTMCQEWH---REKGYSQHVKHTSVKRRREYPYSRR 72
           IRVFP  D+R VKAAS+K LF TPR M +E     + KG  +  +  +V+    +  S  
Sbjct: 4   IRVFPMPDKRAVKAASEKTLFSTPRIMLRERQLKTKGKGRREKQRFVAVRSSLSFILS-- 63

Query: 73  DNRDLPTTENEMEREKRETKIRPCPFRHRCHPSPSSLAVPPRSATLDKFEYKVCLFEDDL 132
                                           S SSLAVP +SATLD    +   FEDDL
Sbjct: 64  --------------------------------SLSSLAVPLQSATLDSMFLE---FEDDL 123

Query: 133 DNIAGGSLSEGDNAGPSSQQPATLTFRIRAQSRLLELEHHVAINGRIPMTIAPRAK 185
           DNIAGGS S GDNA  SSQQPATLT R  AQSRLLELE HVAING I MTI  RA+
Sbjct: 124 DNIAGGSSSVGDNAESSSQQPATLTSRRCAQSRLLELERHVAINGCILMTITLRAE 142

[Close]

BLAST of MELO3C020227.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CL57 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold107G00570 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 9.11e-20
Identity = 47/61 (77.05%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 125 FEDDLDNIAGGSLSEGDNAGPSSQQPATLTFRIRAQSRLLELEHHVAINGRIPMTIAPRA 184
           FEDDLDNI GGS S GDN   SSQQP T T + RAQSRLLELE HVAINGRIPMTIAP A
Sbjct: 20  FEDDLDNIVGGSSSMGDNTESSSQQPVTPTPKRRAQSRLLELERHVAINGRIPMTIAPGA 79

[Close]

BLAST of MELO3C020227.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DV50 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold236G001270 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.32e-19
Identity = 44/61 (72.13%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 125 FEDDLDNIAGGSLSEGDNAGPSSQQPATLTFRIRAQSRLLELEHHVAINGRIPMTIAPRA 184
           FED+LDN+ GGS   GDNAG +SQ PATLT + RAQ RLLELE H+A+NGRIPMTIAPRA
Sbjct: 5   FEDELDNLTGGSSFVGDNAGSTSQPPATLTPKRRAQFRLLELERHIAVNGRIPMTIAPRA 64

[Close]

BLAST of MELO3C020227.jh1 vs. ExPASy TrEMBL
Match: A0A5A7THM5 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold125G00040 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.20e-19
Identity = 66/113 (58.41%), Postives = 73/113 (64.60%), Query Frame = 0


Query: 77  TENEMEREKRETKIRPCPF-RHRCHPSPSSL--AVPPRSATLDKFEYKVCLFEDDLDN-I 136
           TE E    +RE + R   F R R  PS +++  AV P SATL     +   FEDDLDN I
Sbjct: 40  TERESREGRRENRRRRSVFCRRRSPPSLAAVLAAVQPPSATLGDMFLQ---FEDDLDNNI 99

Query: 137 AGGSLSEGDNAGPSSQQPATLTFRIRAQSRLLELEHHVAINGRIPMTIAPRAK 185
           AGGS S GDN   SS Q AT T R RAQSRLLELE HVAINGRIPMTIAP A+
Sbjct: 100 AGGSSSVGDNTAESSSQQATPTPRRRAQSRLLELERHVAINGRIPMTIAPGAE 149

The following BLAST results are available for this feature:

BLAST of MELO3C020227.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK01603.1	1.41e-32	82.93	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0054290.1	3.80e-27	47.73	CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK12327.1 CACTA en-...	[more]
TYK10969.1	1.88e-19	77.05	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
TYK27239.1	2.72e-19	72.13	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0040895.1	6.61e-19	58.41	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C020227.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C020227.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BPH5	6.81e-33	82.93	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3CK72	1.84e-27	47.73	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3CL57	9.11e-20	77.05	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3DV50	1.32e-19	72.13	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7THM5	3.20e-19	58.41	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]

BLAST of MELO3C020227.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020227.jh1.t1	MELO3C020227.jh1.t1	mRNA