MELO3C020164 (gene) Melon (DHL92) v4

Overview
NameMELO3C020164
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionTranscription factor HBP-1b(C38)-like
Locationchr10: 13436263 .. 13436694 (+)
RNA-Seq ExpressionMELO3C020164
SyntenyMELO3C020164
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCAGCCATGGCACCTCACTACAACACAAATTAGGAGAGAACACTACAAGAGATGGGGTACTCTTGACACACAAAAACGTCGGGAAAAGTGAAAAAATCGTCGGGGAAGGATATGCCGACGTTTTTCTCGAAGTCGGGACCTACGTCGGAAAAACTGAGTCAAGAGAGGCATTCCCGACGCGTGAACGACACGGCGTCGGGAATGCTTCTCCCGGCGTCATGTGTCCCGACACCCTCGACGACGTCGGGAATACCTCTCTCGACGCTGTTTTTTGCGATGAAACCACTGGCGTCGAAAATACCTCTCTCGACGTCTTTTTTGCCGACACATATCGTAGTGTCGGGAATGATATATTCCGACGTTTTTGTACATCCTATTACCGACGTTTTGTTGCGTCGAGAATTCCTTTTTATATGTATTTTTTTTAA

mRNA sequence

ATGATCAGCCATGGCACCTCACTACAACACAAATTAGGAGAGAACACTACAAGAGATGGGGTACTCTTGACACACAAAAACGTCGGGAAAAGTGAAAAAATCGTCGGGGAAGGATATGCCGACGTTTTTCTCGAAGTCGGGACCTACGTCGGAAAAACTGAGTCAAGAGAGGCATTCCCGACGCGTGAACGACACGGCGTCGGGAATGCTTCTCCCGGCGTCATGTGTCCCGACACCCTCGACGACGTCGGGAATACCTCTCTCGACGCTGTTTTTTGCGATGAAACCACTGGCGTCGAAAATACCTCTCTCGACGTCTTTTTTGCCGACACATATCGTAGTGTCGGGAATGATATATTCCGACGTTTTTGTACATCCTATTACCGACGTTTTGTTGCGTCGAGAATTCCTTTTTATATGTATTTTTTTTAA

Coding sequence (CDS)

ATGATCAGCCATGGCACCTCACTACAACACAAATTAGGAGAGAACACTACAAGAGATGGGGTACTCTTGACACACAAAAACGTCGGGAAAAGTGAAAAAATCGTCGGGGAAGGATATGCCGACGTTTTTCTCGAAGTCGGGACCTACGTCGGAAAAACTGAGTCAAGAGAGGCATTCCCGACGCGTGAACGACACGGCGTCGGGAATGCTTCTCCCGGCGTCATGTGTCCCGACACCCTCGACGACGTCGGGAATACCTCTCTCGACGCTGTTTTTTGCGATGAAACCACTGGCGTCGAAAATACCTCTCTCGACGTCTTTTTTGCCGACACATATCGTAGTGTCGGGAATGATATATTCCGACGTTTTTGTACATCCTATTACCGACGTTTTGTTGCGTCGAGAATTCCTTTTTATATGTATTTTTTTTAA

Protein sequence

MISHGTSLQHKLGENTTRDGVLLTHKNVGKSEKIVGEGYADVFLEVGTYVGKTESREAFPTRERHGVGNASPGVMCPDTLDDVGNTSLDAVFCDETTGVENTSLDVFFADTYRSVGNDIFRRFCTSYYRRFVASRIPFYMYFF
Homology
BLAST of MELO3C020164 vs. NCBI nr
Match: KAA0055548.1 (hypothetical protein E6C27_scaffold222G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 132.5 bits (332), Expect = 2.9e-27
Identity = 66/104 (63.46%), Postives = 82/104 (78.85%), Query Frame = 0

Query: 25  HKNVGKSEKIVGEGYADVFLEVGTYVGKTESREAFPTRERHGVGNASPGVMCPDTLDDVG 84
           HKNVG+SEKIVG+GYAD+F  VG++VGK+E  EAF TR++HGVGNAS  V+  D +DDV 
Sbjct: 2   HKNVGESEKIVGKGYADIFRGVGSHVGKSELGEAFLTRDQHGVGNASSDVVFLDVIDDVK 61

Query: 85  -NTSLDAVFCDETTGVENTSLDVFFADTYRSVGNDIFRRFCTSY 128
            NTS DA+F DE T +  +S DV F+D+YRS+GND FRRFC SY
Sbjct: 62  INTSPDAIFGDEITSIGKSSPDVVFSDSYRSIGNDFFRRFCASY 105

BLAST of MELO3C020164 vs. NCBI nr
Match: KAA0037416.1 (hypothetical protein E6C27_scaffold278G001280 [Cucumis melo var. makuwa] >TYJ97498.1 hypothetical protein E5676_scaffold85G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 122.5 bits (306), Expect = 3.0e-24
Identity = 63/95 (66.32%), Postives = 72/95 (75.79%), Query Frame = 0

Query: 21  VLLTHKNVGKSEKIVGEGYADVFLEVGTYVGKTESREAFPTRERHGVGNASPGVMCPDTL 80
           VL THKN+ +SEKIVG+GY DVF  V  YVGKTES EA PTRE+H VGNASP V+ PD +
Sbjct: 10  VLPTHKNIRESEKIVGKGYTDVFRWVRPYVGKTESGEASPTREQHSVGNASPDVVFPDDV 69

Query: 81  DDVGNTSLDAVFCDETTGVENTSLDVFFADTYRSV 116
           D V NTSLD +F DET GVEN S DV F ++Y SV
Sbjct: 70  DGVKNTSLDTLFGDETVGVENASPDVIFINSYGSV 104

BLAST of MELO3C020164 vs. NCBI nr
Match: KAA0060536.1 (hypothetical protein E6C27_scaffold22G003970 [Cucumis melo var. makuwa] >TYK00779.1 hypothetical protein E5676_scaffold420G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 116.3 bits (290), Expect = 2.1e-22
Identity = 61/96 (63.54%), Postives = 72/96 (75.00%), Query Frame = 0

Query: 25  HKNVGKSEKIVGEGYADVFLEVGTYVGKTESREAFPTRERHGVGNASPGVMCPDTLDDVG 84
           HKNVG+SE IV +GY DVF  VG  V K+ES EAF TRE+HG+GNASP V+ PD ++   
Sbjct: 2   HKNVGESENIVRKGYTDVFRSVGPPVRKSESGEAFLTREQHGIGNASPDVVFPDAVE--- 61

Query: 85  NTSLDAVFCDETTGVENTSLDVFFADTYRSVGNDIF 121
           NTSLD VF +ETTGV  +S DV F D+YRSVGND F
Sbjct: 62  NTSLDVVFGNETTGVGKSSPDVVFFDSYRSVGNDFF 94

BLAST of MELO3C020164 vs. NCBI nr
Match: KAA0067048.1 (hypothetical protein E6C27_scaffold38G00950 [Cucumis melo var. makuwa] >TYK26285.1 hypothetical protein E5676_scaffold14G00590 [Cucumis melo var. makuwa])

HSP 1 Score: 113.2 bits (282), Expect = 1.8e-21
Identity = 59/92 (64.13%), Postives = 69/92 (75.00%), Query Frame = 0

Query: 20  GVLLTHKNVGKSEKIVGEGYADVFLEVGTYVGKTESREAFPTRERHGVGNASPGVMCPDT 79
           GVL THKN+ +S+KIVGEGY DVF  VG YV K ES EAF T E+HGVGNAS     PD 
Sbjct: 11  GVLSTHKNIEESKKIVGEGYVDVFCGVGPYVRKIESGEAFSTHEQHGVGNAS-----PDD 70

Query: 80  LDDVGNTSLDAVFCDETTGVENTSLDVFFADT 112
           +D VGNT  DA+F D+TTG+ NTS DVFFA++
Sbjct: 71  VDGVGNTYPDAIFGDQTTGIGNTSPDVFFANS 97

BLAST of MELO3C020164 vs. NCBI nr
Match: KAA0063199.1 (hypothetical protein E6C27_scaffold205G00060 [Cucumis melo var. makuwa] >TYK23494.1 hypothetical protein E5676_scaffold2774G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 1.0e-16
Identity = 50/86 (58.14%), Postives = 59/86 (68.60%), Query Frame = 0

Query: 20  GVLLTHKNVGKSEKIVGEGYADVFLEVGTYVGKTESREAFPTRERHGVGNASPGVMCPDT 79
           GVL TH       KIV +GYAD+F  VG YVGKTES+EAFPT E+HG+GNA P V+ PD 
Sbjct: 119 GVLPTH-------KIVEKGYADIFCGVGPYVGKTESKEAFPTLEQHGIGNAYPDVVFPDD 178

Query: 80  LDDVGNTSLDAVFCDETTGVENTSLD 106
            D V NTS + V+CD T GV N + D
Sbjct: 179 ADGVENTSPNPVYCDRTAGVRNVTPD 197

BLAST of MELO3C020164 vs. ExPASy TrEMBL
Match: A0A5A7UKH4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold222G00210 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.4e-27
Identity = 66/104 (63.46%), Postives = 82/104 (78.85%), Query Frame = 0

Query: 25  HKNVGKSEKIVGEGYADVFLEVGTYVGKTESREAFPTRERHGVGNASPGVMCPDTLDDVG 84
           HKNVG+SEKIVG+GYAD+F  VG++VGK+E  EAF TR++HGVGNAS  V+  D +DDV 
Sbjct: 2   HKNVGESEKIVGKGYADIFRGVGSHVGKSELGEAFLTRDQHGVGNASSDVVFLDVIDDVK 61

Query: 85  -NTSLDAVFCDETTGVENTSLDVFFADTYRSVGNDIFRRFCTSY 128
            NTS DA+F DE T +  +S DV F+D+YRS+GND FRRFC SY
Sbjct: 62  INTSPDAIFGDEITSIGKSSPDVVFSDSYRSIGNDFFRRFCASY 105

BLAST of MELO3C020164 vs. ExPASy TrEMBL
Match: A0A5A7T5J5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold85G00030 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.5e-24
Identity = 63/95 (66.32%), Postives = 72/95 (75.79%), Query Frame = 0

Query: 21  VLLTHKNVGKSEKIVGEGYADVFLEVGTYVGKTESREAFPTRERHGVGNASPGVMCPDTL 80
           VL THKN+ +SEKIVG+GY DVF  V  YVGKTES EA PTRE+H VGNASP V+ PD +
Sbjct: 10  VLPTHKNIRESEKIVGKGYTDVFRWVRPYVGKTESGEASPTREQHSVGNASPDVVFPDDV 69

Query: 81  DDVGNTSLDAVFCDETTGVENTSLDVFFADTYRSV 116
           D V NTSLD +F DET GVEN S DV F ++Y SV
Sbjct: 70  DGVKNTSLDTLFGDETVGVENASPDVIFINSYGSV 104

BLAST of MELO3C020164 vs. ExPASy TrEMBL
Match: A0A5A7V224 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00470 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.0e-22
Identity = 61/96 (63.54%), Postives = 72/96 (75.00%), Query Frame = 0

Query: 25  HKNVGKSEKIVGEGYADVFLEVGTYVGKTESREAFPTRERHGVGNASPGVMCPDTLDDVG 84
           HKNVG+SE IV +GY DVF  VG  V K+ES EAF TRE+HG+GNASP V+ PD ++   
Sbjct: 2   HKNVGESENIVRKGYTDVFRSVGPPVRKSESGEAFLTREQHGIGNASPDVVFPDAVE--- 61

Query: 85  NTSLDAVFCDETTGVENTSLDVFFADTYRSVGNDIF 121
           NTSLD VF +ETTGV  +S DV F D+YRSVGND F
Sbjct: 62  NTSLDVVFGNETTGVGKSSPDVVFFDSYRSVGNDFF 94

BLAST of MELO3C020164 vs. ExPASy TrEMBL
Match: A0A5D3DSF9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G00590 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 8.8e-22
Identity = 59/92 (64.13%), Postives = 69/92 (75.00%), Query Frame = 0

Query: 20  GVLLTHKNVGKSEKIVGEGYADVFLEVGTYVGKTESREAFPTRERHGVGNASPGVMCPDT 79
           GVL THKN+ +S+KIVGEGY DVF  VG YV K ES EAF T E+HGVGNAS     PD 
Sbjct: 11  GVLSTHKNIEESKKIVGEGYVDVFCGVGPYVRKIESGEAFSTHEQHGVGNAS-----PDD 70

Query: 80  LDDVGNTSLDAVFCDETTGVENTSLDVFFADT 112
           +D VGNT  DA+F D+TTG+ NTS DVFFA++
Sbjct: 71  VDGVGNTYPDAIFGDQTTGIGNTSPDVFFANS 97

BLAST of MELO3C020164 vs. ExPASy TrEMBL
Match: A0A5A7VC74 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2774G00090 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 5.0e-17
Identity = 50/86 (58.14%), Postives = 59/86 (68.60%), Query Frame = 0

Query: 20  GVLLTHKNVGKSEKIVGEGYADVFLEVGTYVGKTESREAFPTRERHGVGNASPGVMCPDT 79
           GVL TH       KIV +GYAD+F  VG YVGKTES+EAFPT E+HG+GNA P V+ PD 
Sbjct: 119 GVLPTH-------KIVEKGYADIFCGVGPYVGKTESKEAFPTLEQHGIGNAYPDVVFPDD 178

Query: 80  LDDVGNTSLDAVFCDETTGVENTSLD 106
            D V NTS + V+CD T GV N + D
Sbjct: 179 ADGVENTSPNPVYCDRTAGVRNVTPD 197

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0055548.12.9e-2763.46hypothetical protein E6C27_scaffold222G00210 [Cucumis melo var. makuwa][more]
KAA0037416.13.0e-2466.32hypothetical protein E6C27_scaffold278G001280 [Cucumis melo var. makuwa] >TYJ974... [more]
KAA0060536.12.1e-2263.54hypothetical protein E6C27_scaffold22G003970 [Cucumis melo var. makuwa] >TYK0077... [more]
KAA0067048.11.8e-2164.13hypothetical protein E6C27_scaffold38G00950 [Cucumis melo var. makuwa] >TYK26285... [more]
KAA0063199.11.0e-1658.14hypothetical protein E6C27_scaffold205G00060 [Cucumis melo var. makuwa] >TYK2349... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UKH41.4e-2763.46Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7T5J51.5e-2466.32Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V2241.0e-2263.54Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DSF98.8e-2264.13Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VC745.0e-1758.14Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C020164.1MELO3C020164.1mRNA