MELO3C019989 (gene) Melon (DHL92) v4

Overview


Name	MELO3C019989
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	transcription regulators
Location	chr03: 19621888 .. 19623108 (-)
RNA-Seq Expression	MELO3C019989
Synteny	MELO3C019989

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCTTTTAATTATCCCAATTCAGAATTTGAATAAAAGTAATATAATTTGGTGGGTTTTTTCTTTTTTCATGAAGAAGAAGGAATGATTTTGTAACACAATTGAAAGAAAATGGTATACTTTGTTTGTGTGGAAGCAGCTAAACAAGGCGTCGATTATAGTGGATGCATCGAAATATATCGAGGAGCTAAAACAAAAAGTAGAAAGATTGAATCAAGATATATCCACCGTTCAAAATTCAAATCCACTTTCTCATCAATATTCTCCCATGGTATATAAATTTCAATTATTTCAAATAATATCCTCTTTTATTTGGTTTGTTTGTGTATTTAAATTTTAGAAAAATAAAAAAAGAAATTAATTAACCTATATTATTATGTGGTTTTTTTTGTTTATATTATATAGCAGGTAACAGTGGAAAGGGTAGTAAAGGGATTTTCTATAAATGTATTTTCAGAAAAGAGTTGTCAAGGTCTTCTTGTCTCCATATTAGAAGTGTTTGAAGAGCTTGGACTTAATGTTATTGAAGCTAGGGTTTCTTGTACTCATACTTTCCAATTACAAGCTATTGGAGAAGTAAGATTTTCCATACACCCTTCTTTCTATATTTATATAATACCATCTTTTTTAATTTAATTATTATTATCATTTTAATTATTTCTCCATTTCACCAATTCTAATTAATTTCATCCACACATTATATATAACAAAATACCAACTATAGACATTAGATTAAGAAATTGTGTGTTATATATATTTATAAATATTTTCAAGAAATTTGTTATTTACAAAGATTTTCCAAAATTTAACCTAAAGTAATTGAATTTTCCATGTAATTAATTAATATAATCATACACTTCAAATTAAATGTTATTGGGTCTGTTTTTTTGGGGTAGATTGAGGAAGAAGGAGAAGAAGCCATTGATGCTCAAACTGTGAAAGAAGCAGTAGTTCAAGCAATAAAGAGCTGGAGCCAAAATGGTGAACAAGATTAATAAATCTAATCTCTACAAGGAGAATTAATTATTCCCCCCCTCCAGAAGAAAACCCTTAATTTCTCCAACTTGTTTTAATCGCGGCGTTTTTTGTTAATTATTATTATTATCTCTATCTGTTTGTAATGTGGTAAAAATTAATCAATGGAAAAACCGATTGATTAATGTTCTTCCAATTAAATGGAAAGATAATAATAACCAAATATATTCTTTTTTTAAAAGAAATT

mRNA sequence

TTTCTTTTAATTATCCCAATTCAGAATTTGAATAAAAGTAATATAATTTGGTGGGTTTTTTCTTTTTTCATGAAGAAGAAGGAATGATTTTGTAACACAATTGAAAGAAAATGGTATACTTTGTTTGTGTGGAAGCAGCTAAACAAGGCGTCGATTATAGTGGATGCATCGAAATATATCGAGGAGCTAAAACAAAAAGTAGAAAGATTGAATCAAGATATATCCACCGTTCAAAATTCAAATCCACTTTCTCATCAATATTCTCCCATGCAGGTAACAGTGGAAAGGGTAGTAAAGGGATTTTCTATAAATGTATTTTCAGAAAAGAGTTGTCAAGGTCTTCTTGTCTCCATATTAGAAGTGTTTGAAGAGCTTGGACTTAATGTTATTGAAGCTAGGGTTTCTTGTACTCATACTTTCCAATTACAAGCTATTGGAGAAATTGAGGAAGAAGGAGAAGAAGCCATTGATGCTCAAACTGTGAAAGAAGCAGTAGTTCAAGCAATAAAGAGCTGGAGCCAAAATGGTGAACAAGATTAATAAATCTAATCTCTACAAGGAGAATTAATTATTCCCCCCCTCCAGAAGAAAACCCTTAATTTCTCCAACTTGTTTTAATCGCGGCGTTTTTTGTTAATTATTATTATTATCTCTATCTGTTTGTAATGTGGTAAAAATTAATCAATGGAAAAACCGATTGATTAATGTTCTTCCAATTAAATGGAAAGATAATAATAACCAAATATATTCTTTTTTTAAAAGAAATT

Coding sequence (CDS)

ATGCAGGTAACAGTGGAAAGGGTAGTAAAGGGATTTTCTATAAATGTATTTTCAGAAAAGAGTTGTCAAGGTCTTCTTGTCTCCATATTAGAAGTGTTTGAAGAGCTTGGACTTAATGTTATTGAAGCTAGGGTTTCTTGTACTCATACTTTCCAATTACAAGCTATTGGAGAAATTGAGGAAGAAGGAGAAGAAGCCATTGATGCTCAAACTGTGAAAGAAGCAGTAGTTCAAGCAATAAAGAGCTGGAGCCAAAATGGTGAACAAGATTAA

Protein sequence

MQVTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTHTFQLQAIGEIEEEGEEAIDAQTVKEAVVQAIKSWSQNGEQD

Homology

[Close]

BLAST of MELO3C019989 vs. NCBI nr
Match: XP_011656425.1 (uncharacterized protein LOC101218918 isoform X1 [Cucumis sativus] >KGN45818.1 hypothetical protein Csa_005035 [Cucumis sativus])

HSP 1 Score: 171.4 bits (433), Expect = 3.5e-39
Identity = 89/90 (98.89%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 1   MQVTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTHTFQLQAIGEIE 60
           MQVTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTHTFQLQAIGEIE
Sbjct: 71  MQVTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTHTFQLQAIGEIE 130

Query: 61  EEGEEAIDAQTVKEAVVQAIKSWSQNGEQD 91
           EEGEE IDAQTVKEAVVQAIKSWSQNGEQD
Sbjct: 131 EEGEEGIDAQTVKEAVVQAIKSWSQNGEQD 160

[Close]

BLAST of MELO3C019989 vs. NCBI nr
Match: XP_016901983.1 (PREDICTED: uncharacterized protein LOC103496601 [Cucumis melo])

HSP 1 Score: 169.1 bits (427), Expect = 1.8e-38
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 3   VTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTHTFQLQAIGEIEEE 62
           VTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTHTFQLQAIGEIEEE
Sbjct: 72  VTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTHTFQLQAIGEIEEE 131

Query: 63  GEEAIDAQTVKEAVVQAIKSWSQNGEQD 91
           GEEAIDAQTVKEAVVQAIKSWSQNGEQD
Sbjct: 132 GEEAIDAQTVKEAVVQAIKSWSQNGEQD 159

[Close]

BLAST of MELO3C019989 vs. NCBI nr
Match: XP_004138402.1 (uncharacterized protein LOC101218918 isoform X2 [Cucumis sativus])

HSP 1 Score: 167.5 bits (423), Expect = 5.1e-38
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 3   VTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTHTFQLQAIGEIEEE 62
           VTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTHTFQLQAIGEIEEE
Sbjct: 72  VTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTHTFQLQAIGEIEEE 131

Query: 63  GEEAIDAQTVKEAVVQAIKSWSQNGEQD 91
           GEE IDAQTVKEAVVQAIKSWSQNGEQD
Sbjct: 132 GEEGIDAQTVKEAVVQAIKSWSQNGEQD 159

[Close]

BLAST of MELO3C019989 vs. NCBI nr
Match: XP_038884497.1 (uncharacterized protein LOC120075304 isoform X2 [Benincasa hispida])

HSP 1 Score: 160.6 bits (405), Expect = 6.3e-36
Identity = 84/90 (93.33%), Postives = 86/90 (95.56%), Query Frame = 0


Query: 1   MQVTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTHTFQLQAIGEIE 60
           MQVTVER+VKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCT TFQLQAI EIE
Sbjct: 73  MQVTVERLVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTDTFQLQAIAEIE 132

Query: 61  EEGEEAIDAQTVKEAVVQAIKSWSQNGEQD 91
           EEGEEAIDAQ VKEAVVQAIKSW Q+GEQD
Sbjct: 133 EEGEEAIDAQAVKEAVVQAIKSWGQSGEQD 162

[Close]

BLAST of MELO3C019989 vs. NCBI nr
Match: XP_038884496.1 (uncharacterized protein LOC120075304 isoform X1 [Benincasa hispida])

HSP 1 Score: 160.6 bits (405), Expect = 6.3e-36
Identity = 84/90 (93.33%), Postives = 86/90 (95.56%), Query Frame = 0


Query: 1   MQVTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTHTFQLQAIGEIE 60
           MQVTVER+VKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCT TFQLQAI EIE
Sbjct: 74  MQVTVERLVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTDTFQLQAIAEIE 133

Query: 61  EEGEEAIDAQTVKEAVVQAIKSWSQNGEQD 91
           EEGEEAIDAQ VKEAVVQAIKSW Q+GEQD
Sbjct: 134 EEGEEAIDAQAVKEAVVQAIKSWGQSGEQD 163

[Close]

BLAST of MELO3C019989 vs. ExPASy TrEMBL
Match: A0A0A0K8N7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G013900 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.7e-39
Identity = 89/90 (98.89%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 1   MQVTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTHTFQLQAIGEIE 60
           MQVTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTHTFQLQAIGEIE
Sbjct: 71  MQVTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTHTFQLQAIGEIE 130

Query: 61  EEGEEAIDAQTVKEAVVQAIKSWSQNGEQD 91
           EEGEE IDAQTVKEAVVQAIKSWSQNGEQD
Sbjct: 131 EEGEEGIDAQTVKEAVVQAIKSWSQNGEQD 160

[Close]

BLAST of MELO3C019989 vs. ExPASy TrEMBL
Match: A0A1S4E185 (uncharacterized protein LOC103496601 OS=Cucumis melo OX=3656 GN=LOC103496601 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 8.5e-39
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 3   VTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTHTFQLQAIGEIEEE 62
           VTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTHTFQLQAIGEIEEE
Sbjct: 72  VTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTHTFQLQAIGEIEEE 131

Query: 63  GEEAIDAQTVKEAVVQAIKSWSQNGEQD 91
           GEEAIDAQTVKEAVVQAIKSWSQNGEQD
Sbjct: 132 GEEAIDAQTVKEAVVQAIKSWSQNGEQD 159

[Close]

BLAST of MELO3C019989 vs. ExPASy TrEMBL
Match: A0A6J1JV46 (uncharacterized protein LOC111487778 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487778 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.2e-34
Identity = 79/90 (87.78%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 1   MQVTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTHTFQLQAIGEIE 60
           MQVTVE +VKGFSINVFSEKSCQGLLVSILE FEELGLNV+EARVSCT TFQLQA  EIE
Sbjct: 67  MQVTVEALVKGFSINVFSEKSCQGLLVSILEAFEELGLNVLEARVSCTDTFQLQAFAEIE 126

Query: 61  EEGEEAIDAQTVKEAVVQAIKSWSQNGEQD 91
           E+GEEA+DAQ VKEAVV+AIKSWSQNGEQD
Sbjct: 127 EQGEEAMDAQAVKEAVVEAIKSWSQNGEQD 156

[Close]

BLAST of MELO3C019989 vs. ExPASy TrEMBL
Match: A0A6J1HIH6 (uncharacterized protein LOC111464709 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464709 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.2e-34
Identity = 79/90 (87.78%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 1   MQVTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTHTFQLQAIGEIE 60
           MQVTVE +VKGFSINVFSEKSCQGLLVSILE FEELGLNV+EARVSCT TFQLQA  EIE
Sbjct: 67  MQVTVEALVKGFSINVFSEKSCQGLLVSILEAFEELGLNVLEARVSCTDTFQLQAFAEIE 126

Query: 61  EEGEEAIDAQTVKEAVVQAIKSWSQNGEQD 91
           E+GEEA+DAQ VKEAVV+AIKSWSQNGEQD
Sbjct: 127 EQGEEAMDAQAVKEAVVEAIKSWSQNGEQD 156

[Close]

BLAST of MELO3C019989 vs. ExPASy TrEMBL
Match: A0A6J1K1N3 (uncharacterized protein LOC111489817 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111489817 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.1e-33
Identity = 79/90 (87.78%), Postives = 83/90 (92.22%), Query Frame = 0


Query: 1   MQVTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTHTFQLQAIGEIE 60
           MQVTVE + KGFSINVFSEKSCQGLLVSILE FEELGLNV+EARVSCT +FQLQAI EIE
Sbjct: 65  MQVTVESLAKGFSINVFSEKSCQGLLVSILEAFEELGLNVLEARVSCTDSFQLQAIAEIE 124

Query: 61  EEGEEAIDAQTVKEAVVQAIKSWSQNGEQD 91
           EEGEEAIDAQ VKEAVVQAIK WSQ+GEQD
Sbjct: 125 EEGEEAIDAQAVKEAVVQAIKIWSQSGEQD 154

[Close]

BLAST of MELO3C019989 vs. TAIR 10
Match: AT2G40435.1 (BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G56220.1); Has 289 Blast hits to 289 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 289; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 93.2 bits (230), Expect = 1.1e-19
Identity = 48/83 (57.83%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 3   VTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTHTFQLQAIGEIEEE 62
           VTVE + KGF INVFS K+  G+LVS+LE FE++GLNV+EAR SCT +F L A+G +E E
Sbjct: 71  VTVETLDKGFMINVFSGKNQPGMLVSVLEAFEDIGLNVLEARASCTDSFSLHAMG-LENE 130

Query: 63  GEEAIDAQTVKEAVVQAIKSWSQ 86
             E +DA+ VK+AV  AI+SW +
Sbjct: 131 DGENMDAEAVKQAVTDAIRSWGE 152

[Close]

BLAST of MELO3C019989 vs. TAIR 10
Match: AT3G56220.1 (transcription regulators )

HSP 1 Score: 92.4 bits (228), Expect = 1.9e-19
Identity = 46/84 (54.76%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 3   VTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTHTFQLQAIGEIEEE 62
           VTVE + KGF I V S K+  G+LV +LE FE+LGL+V+EARVSCT TF L AIG    +
Sbjct: 71  VTVETLEKGFMIKVMSRKNEAGMLVCVLETFEDLGLDVVEARVSCTDTFSLHAIGSSNND 130

Query: 63  GEEAIDAQTVKEAVVQAIKSWSQN 87
             + IDA+ VK+AV +AI++WS +
Sbjct: 131 DGDCIDAEAVKQAVAEAIRTWSDS 154

[Close]

BLAST of MELO3C019989 vs. TAIR 10
Match: AT1G29270.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40435.1); Has 98 Blast hits to 98 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.5 bits (114), Expect = 3.2e-06
Identity = 24/55 (43.64%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 2   QVTVERVVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTHTFQLQAI 57
           +V VE++ + F + + S +  +  LV+ILE FEE+GLNV +AR SC  +F ++AI
Sbjct: 72  EVKVEKIGEMFQVKIKSPRG-ENNLVNILEAFEEMGLNVAQARASCLDSFAMEAI 125

The following BLAST results are available for this feature:

BLAST of MELO3C019989 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011656425.1	3.5e-39	98.89	uncharacterized protein LOC101218918 isoform X1 [Cucumis sativus] >KGN45818.1 hy...	[more]
XP_016901983.1	1.8e-38	100.00	PREDICTED: uncharacterized protein LOC103496601 [Cucumis melo]	[more]
XP_004138402.1	5.1e-38	98.86	uncharacterized protein LOC101218918 isoform X2 [Cucumis sativus]	[more]
XP_038884497.1	6.3e-36	93.33	uncharacterized protein LOC120075304 isoform X2 [Benincasa hispida]	[more]
XP_038884496.1	6.3e-36	93.33	uncharacterized protein LOC120075304 isoform X1 [Benincasa hispida]	[more]

BLAST of MELO3C019989 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C019989 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8N7	1.7e-39	98.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G013900 PE=4 SV=1	[more]
A0A1S4E185	8.5e-39	100.00	uncharacterized protein LOC103496601 OS=Cucumis melo OX=3656 GN=LOC103496601 PE=...	[more]
A0A6J1JV46	2.2e-34	87.78	uncharacterized protein LOC111487778 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1HIH6	2.2e-34	87.78	uncharacterized protein LOC111464709 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1K1N3	1.1e-33	87.78	uncharacterized protein LOC111489817 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of MELO3C019989 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G40435.1	1.1e-19	57.83	BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G5...	[more]
AT3G56220.1	1.9e-19	54.76	transcription regulators	[more]
AT1G29270.1	3.2e-06	43.64	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31945:SF5	TRANSCRIPTION FACTOR SCREAM-LIKE PROTEIN	coord: 2..87
None	No IPR available	PANTHER	PTHR31945	TRANSCRIPTION FACTOR SCREAM2-RELATED	coord: 2..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019989.1	MELO3C019989.1	mRNA