MELO3C019718 (gene) Melon (DHL92) v4

Overview
NameMELO3C019718
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionProtein RALF-like 17
Locationchr11: 22539536 .. 22539889 (+)
RNA-Seq ExpressionMELO3C019718
SyntenyMELO3C019718
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTATTTCAAGACGATTAGCCCTAATTCTTTCCCTCGGAACAATCCTTTTCTCCTTCTTGTTCACCAGAGTTTCCGCCGCCGGATCCGACTACGGCAACGACATTCACACCGTGAGGCACCCCTCCGACACTGCTGATTGCAAGCGCGAACATCTCGACAAAGGCGACCAATGCAGGGAAGACAACGACCTCTTTGAGGACGACGATTTTGACGATACCTACAAAATCGTTAACAACATTGCCATAACCCTATCGGCGTCCGGCAGTATACTTCAGCCCGACGCAGAGGAATCGGATGACATTCCATCATCGGAGGAAGAGATCGGCAACATGCTTATAGTGGGGCACTGA

mRNA sequence

ATGGCTATTTCAAGACGATTAGCCCTAATTCTTTCCCTCGGAACAATCCTTTTCTCCTTCTTGTTCACCAGAGTTTCCGCCGCCGGATCCGACTACGGCAACGACATTCACACCGTGAGGCACCCCTCCGACACTGCTGATTGCAAGCGCGAACATCTCGACAAAGGCGACCAATGCAGGGAAGACAACGACCTCTTTGAGGACGACGATTTTGACGATACCTACAAAATCGTTAACAACATTGCCATAACCCTATCGGCGTCCGGCAGTATACTTCAGCCCGACGCAGAGGAATCGGATGACATTCCATCATCGGAGGAAGAGATCGGCAACATGCTTATAGTGGGGCACTGA

Coding sequence (CDS)

ATGGCTATTTCAAGACGATTAGCCCTAATTCTTTCCCTCGGAACAATCCTTTTCTCCTTCTTGTTCACCAGAGTTTCCGCCGCCGGATCCGACTACGGCAACGACATTCACACCGTGAGGCACCCCTCCGACACTGCTGATTGCAAGCGCGAACATCTCGACAAAGGCGACCAATGCAGGGAAGACAACGACCTCTTTGAGGACGACGATTTTGACGATACCTACAAAATCGTTAACAACATTGCCATAACCCTATCGGCGTCCGGCAGTATACTTCAGCCCGACGCAGAGGAATCGGATGACATTCCATCATCGGAGGAAGAGATCGGCAACATGCTTATAGTGGGGCACTGA

Protein sequence

MAISRRLALILSLGTILFSFLFTRVSAAGSDYGNDIHTVRHPSDTADCKREHLDKGDQCREDNDLFEDDDFDDTYKIVNNIAITLSASGSILQPDAEESDDIPSSEEEIGNMLIVGH
Homology
BLAST of MELO3C019718 vs. NCBI nr
Match: KAA0054503.1 (hypothetical protein E6C27_scaffold24G002830 [Cucumis melo var. makuwa] >TYK14536.1 hypothetical protein E5676_scaffold552G00150 [Cucumis melo var. makuwa])

HSP 1 Score: 228.4 bits (581), Expect = 3.2e-56
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0

Query: 1   MAISRRLALILSLGTILFSFLFTRVSAAGSDYGNDIHTVRHPSDTADCKREHLDKGDQCR 60
           MAISRRLALILSLGTILFSFLFTRVSAAGSDYGNDIHTVRHPSDTADCKREHLDKGDQCR
Sbjct: 1   MAISRRLALILSLGTILFSFLFTRVSAAGSDYGNDIHTVRHPSDTADCKREHLDKGDQCR 60

Query: 61  EDNDLFEDDDFDDTYKIVNNIAITLSASGSILQPDAEESDDIPSSEEEIGNMLIVGH 118
           EDNDLFEDDDFDDTYKIVNNIAITLSASGSILQPDAEESDDIPSSEEEIGNMLIVGH
Sbjct: 61  EDNDLFEDDDFDDTYKIVNNIAITLSASGSILQPDAEESDDIPSSEEEIGNMLIVGH 117

BLAST of MELO3C019718 vs. NCBI nr
Match: KAE8646929.1 (hypothetical protein Csa_021071 [Cucumis sativus])

HSP 1 Score: 185.7 bits (470), Expect = 2.4e-43
Identity = 96/115 (83.48%), Postives = 106/115 (92.17%), Query Frame = 0

Query: 1   MAISRRLALILSLGTILFSFLFTRVS-AAGSDYGNDIHTVRHPSDTADCKREHLDKGDQC 60
           MAISRRL LIL+LGTILF FLF  VS AAG DYG+DIHTV+HPSDTA+CKREHLDKGDQC
Sbjct: 1   MAISRRLPLILTLGTILFCFLFIGVSAAAGPDYGDDIHTVKHPSDTAECKREHLDKGDQC 60

Query: 61  REDNDLFEDDDFDDTYKIVNNIAITLSASGSILQPDAEESDDIPSSEEEIGNMLI 115
           RE+NDLFEDDDFDDTYKIVNNIA+TLSASG ILQ + EES+DIPSSEEE+GN+LI
Sbjct: 61  REENDLFEDDDFDDTYKIVNNIAVTLSASGRILQQETEESEDIPSSEEEMGNILI 115

BLAST of MELO3C019718 vs. NCBI nr
Match: KAG6570557.1 (hypothetical protein SDJN03_29472, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 148.3 bits (373), Expect = 4.2e-32
Identity = 82/117 (70.09%), Postives = 94/117 (80.34%), Query Frame = 0

Query: 1   MAISRRLALILSLGTILFSFLFTRVSAAGSDYGNDIHTVRHPSDTADCKREHLDKGDQCR 60
           MA+SRRLAL LSLGTIL   LFTR + A SDYG+DIHTVRH SD+ +C RE   KGDQCR
Sbjct: 1   MAVSRRLAL-LSLGTILLCLLFTRAAIAESDYGDDIHTVRHSSDSDNCNREQPYKGDQCR 60

Query: 61  EDNDLFEDDDFDDTYKIVNNIAITLSASGSILQPDAEESDDIPSSEEEIGNMLIVGH 118
           E+ND  ED+DFDDTYKIVNN+AI LSASGS L+ +AEE DD+P  EEEI N+ IVGH
Sbjct: 61  EENDGVEDEDFDDTYKIVNNVAIRLSASGSKLR-EAEEEDDLPVPEEEIRNLSIVGH 115

BLAST of MELO3C019718 vs. NCBI nr
Match: KAG6604744.1 (hypothetical protein SDJN03_02061, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.1 bits (235), Expect = 4.2e-16
Identity = 58/96 (60.42%), Postives = 69/96 (71.88%), Query Frame = 0

Query: 1  MAISRRLALILSLGTILFSFLFTRVSAAGSDYGNDIHTVRHPSDTADCKREHLDKGDQCR 60
          MA+SRRLAL  SLGTIL  FL TR + A SD+G+++H VR+ S   D      +K  QCR
Sbjct: 1  MAVSRRLAL-FSLGTILLCFLITRAAVADSDHGHNVHVVRYSSAATD----ESEKAHQCR 60

Query: 61 EDNDLFEDDDFDDTYKIVNNIAITLSASGSILQPDA 97
          ++ND   DDDFDDTYKIVNNIAITLSASG IL+  A
Sbjct: 61 QEND-DVDDDFDDTYKIVNNIAITLSASGRILKEGA 90

BLAST of MELO3C019718 vs. NCBI nr
Match: RXH90050.1 (hypothetical protein DVH24_032407 [Malus domestica])

HSP 1 Score: 75.5 bits (184), Expect = 3.4e-10
Identity = 51/119 (42.86%), Postives = 72/119 (60.50%), Query Frame = 0

Query: 1   MAISRRLALILSLGTILFSFLFTRVSAAGSDYGNDIHTVRHPSDTADCKREHLDKGDQCR 60
           MA+SRRL L+L LGT+L S    +V+ A  ++G             DC  +  + GDQCR
Sbjct: 1   MAVSRRL-LLLCLGTLLASVFLLKVAEARENHG-------------DCHSDP-NNGDQCR 60

Query: 61  ED-NDLFEDDDFDDTYKIVNNIAITLSASGSILQPDAEESDDIPSSEE-EIGNMLIVGH 118
           ED  D   DDD DDTYKIVN +A+TLSA    ++PDA+E  D   +E+ E  +++++GH
Sbjct: 61  EDETDAVGDDDVDDTYKIVNKVAVTLSARTGEVEPDADELPDADETEDNESSHVIVMGH 104

BLAST of MELO3C019718 vs. ExPASy TrEMBL
Match: A0A5D3CVV2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00150 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.5e-56
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0

Query: 1   MAISRRLALILSLGTILFSFLFTRVSAAGSDYGNDIHTVRHPSDTADCKREHLDKGDQCR 60
           MAISRRLALILSLGTILFSFLFTRVSAAGSDYGNDIHTVRHPSDTADCKREHLDKGDQCR
Sbjct: 1   MAISRRLALILSLGTILFSFLFTRVSAAGSDYGNDIHTVRHPSDTADCKREHLDKGDQCR 60

Query: 61  EDNDLFEDDDFDDTYKIVNNIAITLSASGSILQPDAEESDDIPSSEEEIGNMLIVGH 118
           EDNDLFEDDDFDDTYKIVNNIAITLSASGSILQPDAEESDDIPSSEEEIGNMLIVGH
Sbjct: 61  EDNDLFEDDDFDDTYKIVNNIAITLSASGSILQPDAEESDDIPSSEEEIGNMLIVGH 117

BLAST of MELO3C019718 vs. ExPASy TrEMBL
Match: A0A0A0KGZ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G169270 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 7.2e-46
Identity = 99/118 (83.90%), Postives = 109/118 (92.37%), Query Frame = 0

Query: 1   MAISRRLALILSLGTILFSFLFTRVS-AAGSDYGNDIHTVRHPSDTADCKREHLDKGDQC 60
           MAISRRL LIL+LGTILF FLF  VS AAG DYG+DIHTV+HPSDTA+CKREHLDKGDQC
Sbjct: 1   MAISRRLPLILTLGTILFCFLFIGVSAAAGPDYGDDIHTVKHPSDTAECKREHLDKGDQC 60

Query: 61  REDNDLFEDDDFDDTYKIVNNIAITLSASGSILQPDAEESDDIPSSEEEIGNMLIVGH 118
           RE+NDLFEDDDFDDTYKIVNNIA+TLSASG ILQ + EES+DIPSSEEE+GN+LIVGH
Sbjct: 61  REENDLFEDDDFDDTYKIVNNIAVTLSASGRILQQETEESEDIPSSEEEMGNILIVGH 118

BLAST of MELO3C019718 vs. ExPASy TrEMBL
Match: A0A2N9FLD3 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15974 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 7.5e-11
Identity = 53/122 (43.44%), Postives = 73/122 (59.84%), Query Frame = 0

Query: 1   MAISRRLALILSLGTILFSFLFTRVSAAG-SDYGNDIHTVRHPSDTADCKREHLDKGDQC 60
           MAISR + L+  LGT+L   L  +VS A  SD+   IH ++H  D   C   H + GDQC
Sbjct: 1   MAISRSV-LLFGLGTLLVCLLLIKVSEADESDHYAPIHVIKH--DGIHCDGAHPNNGDQC 60

Query: 61  REDNDLFE--DDDFDDTYKIVNNIAITLSAS-GSILQPDAEESDDIPSSEEEIGN-MLIV 118
           R D+D  E  DDD DDTYK+VN ++++ SAS G     +     D  S+EEE+ N M+++
Sbjct: 61  RNDDDDNEEVDDDVDDTYKVVNKMSVSFSASTGQSSSSEDPSESDATSTEEELNNHMIVL 119

BLAST of MELO3C019718 vs. ExPASy TrEMBL
Match: A0A498J3I4 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_032407 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.7e-10
Identity = 51/119 (42.86%), Postives = 72/119 (60.50%), Query Frame = 0

Query: 1   MAISRRLALILSLGTILFSFLFTRVSAAGSDYGNDIHTVRHPSDTADCKREHLDKGDQCR 60
           MA+SRRL L+L LGT+L S    +V+ A  ++G             DC  +  + GDQCR
Sbjct: 1   MAVSRRL-LLLCLGTLLASVFLLKVAEARENHG-------------DCHSDP-NNGDQCR 60

Query: 61  ED-NDLFEDDDFDDTYKIVNNIAITLSASGSILQPDAEESDDIPSSEE-EIGNMLIVGH 118
           ED  D   DDD DDTYKIVN +A+TLSA    ++PDA+E  D   +E+ E  +++++GH
Sbjct: 61  EDETDAVGDDDVDDTYKIVNKVAVTLSARTGEVEPDADELPDADETEDNESSHVIVMGH 104

BLAST of MELO3C019718 vs. ExPASy TrEMBL
Match: A0A5N5GAV0 (Protein RALF-like 17 OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_018692 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.1e-09
Identity = 48/119 (40.34%), Postives = 72/119 (60.50%), Query Frame = 0

Query: 1   MAISRRLALILSLGTILFSFLFTRVSAAGSDYGNDIHTVRHPSDTADCKREHLDKGDQCR 60
           MA+SR L L+L LGT+L S    +V+ A  D+G             DC  +  + GDQC+
Sbjct: 1   MAVSRGL-LLLCLGTLLVSVFLVKVAEASEDHG-------------DCHSDP-NNGDQCQ 60

Query: 61  E-DNDLFEDDDFDDTYKIVNNIAITLSASGSILQPDAEESDDIPSSEE-EIGNMLIVGH 118
           E ++D+  DDD DDTYKIVN +A+T SA    ++PDA E+ D   +E+ E  +++++GH
Sbjct: 61  EHESDVIGDDDVDDTYKIVNKVAVTFSARTGEVEPDAAEASDPDDAEDNESSHVIVMGH 104

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAA0054503.13.2e-56100.00hypothetical protein E6C27_scaffold24G002830 [Cucumis melo var. makuwa] >TYK1453... [more]
KAE8646929.12.4e-4383.48hypothetical protein Csa_021071 [Cucumis sativus][more]
KAG6570557.14.2e-3270.09hypothetical protein SDJN03_29472, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6604744.14.2e-1660.42hypothetical protein SDJN03_02061, partial [Cucurbita argyrosperma subsp. sorori... [more]
RXH90050.13.4e-1042.86hypothetical protein DVH24_032407 [Malus domestica][more]
Match NameE-valueIdentityDescription
A0A5D3CVV21.5e-56100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KGZ47.2e-4683.90Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G169270 PE=4 SV=1[more]
A0A2N9FLD37.5e-1143.44Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15974 PE=4 SV=1[more]
A0A498J3I41.7e-1042.86Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_032407 PE=4 SV=1[more]
A0A5N5GAV01.1e-0940.34Protein RALF-like 17 OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_0... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 94..117

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C019718.1MELO3C019718.1mRNA