MELO3C019532.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C019532.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionDUF659 domain-containing protein
Locationchr06: 12108705 .. 12109142 (+)
RNA-Seq ExpressionMELO3C019532.jh1
SyntenyMELO3C019532.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTTTAGGCAGCTGGATTTACCTCTGGAACGACATATATCCCTTTGTGAAGAAAAGGGAGACATCGAGACAGTAAAACAACCTTGGAAGATCCTACCTTCTGGTCATAAGATTGGCACACCAGAACAATTGTGGTATGCCTCATCGAAGATATTAAATTTACAAGAAGATATTCCTGTCATGAATGTTTTTCCAAATAGTTATATTCCATTGTTTCTTAAAGGCAGTGGAAAAAAGCAACAGGCAAAAAATCTACACAGGTGGCAAACCAAAAGCTGCTGTGGAACCAGAAATTACAATTACAAGACTGAGCGTGTTGGGTTAATTACAAAAGCTCAGAAGCATCCTGATGCTGATTCCCTATATGTGAAGAAATTGATGTGGGAGATCGCAACCTCGAACTGTTGTGAGCGGATTAGTCAAGTACATACCAATTGA

mRNA sequence

GTTTTTAGGCAGCTGGATTTACCTCTGGAACGACATATATCCCTTTGTGAAGAAAAGGGAGACATCGAGACAGTAAAACAACCTTGGAAGATCCTACCTTCTGGTCATAAGATTGGCACACCAGAACAATTGTGGTATGCCTCATCGAAGATATTAAATTTACAAGAAGATATTCCTGTCATGAATGTTTTTCCAAATAGTTATATTCCATTGTTTCTTAAAGGCAGTGGAAAAAAGCAACAGGCAAAAAATCTACACAGGTGGCAAACCAAAAGCTGCTGTGGAACCAGAAATTACAATTACAAGACTGAGCGTGTTGGGTTAATTACAAAAGCTCAGAAGCATCCTGATGCTGATTCCCTATATGTGAAGAAATTGATGTGGGAGATCGCAACCTCGAACTGTTGTGAGCGGATTAGTCAAGTACATACCAATTGA

Coding sequence (CDS)

ATGAATGTTTTTCCAAATAGTTATATTCCATTGTTTCTTAAAGGCAGTGGAAAAAAGCAACAGGCAAAAAATCTACACAGGTGGCAAACCAAAAGCTGCTGTGGAACCAGAAATTACAATTACAAGACTGAGCGTGTTGGGTTAATTACAAAAGCTCAGAAGCATCCTGATGCTGATTCCCTATATGTGAAGAAATTGATGTGGGAGATCGCAACCTCGAACTGTTGTGAGCGGATTAGTCAAGTACATACCAATTGA

Protein sequence

MNVFPNSYIPLFLKGSGKKQQAKNLHRWQTKSCCGTRNYNYKTERVGLITKAQKHPDADSLYVKKLMWEIATSNCCERISQVHTN
Homology
BLAST of MELO3C019532.jh1 vs. NCBI nr
Match: KAA0037152.1 (DUF659 domain-containing protein [Cucumis melo var. makuwa] >TYK13921.1 DUF659 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 130 bits (328), Expect = 1.78e-33
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0

Query: 17  GKKQQAKNLHRWQTKSCCGTRNYNYKTERVGLITKAQKHPDADSLYVKKLMWEIATSNC 75
           GKKQQAKNLHRWQTKSCCGTRNYNYKTERVGLITKAQKHPDADSLYVKKLMWEIATSNC
Sbjct: 331 GKKQQAKNLHRWQTKSCCGTRNYNYKTERVGLITKAQKHPDADSLYVKKLMWEIATSNC 389

BLAST of MELO3C019532.jh1 vs. NCBI nr
Match: XP_038907195.1 (methionine--tRNA ligase, cytoplasmic [Benincasa hispida])

HSP 1 Score: 51.6 bits (122), Expect = 3.73e-05
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 0

Query: 13  LKGSGKKQQAKNLHRWQTKSCCGTRNYNYKTE-RVGLITKAQKHPDADSLYVKKL 66
           + GSGKKQQAK+    + K+   T     + + RVGLITKAQKHPDADSLYV+++
Sbjct: 618 VSGSGKKQQAKSTGS-KPKAAVETEITITRLDIRVGLITKAQKHPDADSLYVEEI 671

BLAST of MELO3C019532.jh1 vs. NCBI nr
Match: XP_004138937.1 (probable methionine--tRNA ligase [Cucumis sativus] >KGN61431.1 hypothetical protein Csa_006196 [Cucumis sativus])

HSP 1 Score: 51.2 bits (121), Expect = 5.10e-05
Identity = 28/54 (51.85%), Postives = 34/54 (62.96%), Query Frame = 0

Query: 13  LKGSGKKQQAKNLHRWQTKSCCGTRNYNYKTERVGLITKAQKHPDADSLYVKKL 66
           + G GKKQQAK+    Q  +            RVGLITKAQKHPDADSLYV+++
Sbjct: 617 VSGGGKKQQAKSTGGKQKAAVEQEITITRLDIRVGLITKAQKHPDADSLYVEEI 670

BLAST of MELO3C019532.jh1 vs. NCBI nr
Match: XP_022964435.1 (probable methionine--tRNA ligase [Cucurbita moschata])

HSP 1 Score: 51.2 bits (121), Expect = 5.10e-05
Identity = 28/54 (51.85%), Postives = 34/54 (62.96%), Query Frame = 0

Query: 13  LKGSGKKQQAKNLHRWQTKSCCGTRNYNYKTERVGLITKAQKHPDADSLYVKKL 66
           + GSGKKQQAK+       +            RVGLITKAQKHPDADSLYV+++
Sbjct: 619 VSGSGKKQQAKSTGSKSKAAVEPEITITRLDIRVGLITKAQKHPDADSLYVEEI 672

BLAST of MELO3C019532.jh1 vs. NCBI nr
Match: XP_023000645.1 (probable methionine--tRNA ligase [Cucurbita maxima])

HSP 1 Score: 51.2 bits (121), Expect = 5.10e-05
Identity = 28/54 (51.85%), Postives = 34/54 (62.96%), Query Frame = 0

Query: 13  LKGSGKKQQAKNLHRWQTKSCCGTRNYNYKTERVGLITKAQKHPDADSLYVKKL 66
           + GSGKKQQAK+       +            RVGLITKAQKHPDADSLYV+++
Sbjct: 619 VSGSGKKQQAKSTGSKSKAAVEPEITITRLDIRVGLITKAQKHPDADSLYVEEI 672

BLAST of MELO3C019532.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CQ51 (DUF659 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G001190 PE=4 SV=1)

HSP 1 Score: 130 bits (328), Expect = 8.60e-34
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0

Query: 17  GKKQQAKNLHRWQTKSCCGTRNYNYKTERVGLITKAQKHPDADSLYVKKLMWEIATSNC 75
           GKKQQAKNLHRWQTKSCCGTRNYNYKTERVGLITKAQKHPDADSLYVKKLMWEIATSNC
Sbjct: 331 GKKQQAKNLHRWQTKSCCGTRNYNYKTERVGLITKAQKHPDADSLYVKKLMWEIATSNC 389

BLAST of MELO3C019532.jh1 vs. ExPASy TrEMBL
Match: A0A0A0LN88 (Methionyl-tRNA synthetase OS=Cucumis sativus OX=3659 GN=Csa_2G120970 PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 2.47e-05
Identity = 28/54 (51.85%), Postives = 34/54 (62.96%), Query Frame = 0

Query: 13  LKGSGKKQQAKNLHRWQTKSCCGTRNYNYKTERVGLITKAQKHPDADSLYVKKL 66
           + G GKKQQAK+    Q  +            RVGLITKAQKHPDADSLYV+++
Sbjct: 617 VSGGGKKQQAKSTGGKQKAAVEQEITITRLDIRVGLITKAQKHPDADSLYVEEI 670

BLAST of MELO3C019532.jh1 vs. ExPASy TrEMBL
Match: A0A6J1KIY2 (Methionyl-tRNA synthetase OS=Cucurbita maxima OX=3661 GN=LOC111494895 PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 2.47e-05
Identity = 28/54 (51.85%), Postives = 34/54 (62.96%), Query Frame = 0

Query: 13  LKGSGKKQQAKNLHRWQTKSCCGTRNYNYKTERVGLITKAQKHPDADSLYVKKL 66
           + GSGKKQQAK+       +            RVGLITKAQKHPDADSLYV+++
Sbjct: 619 VSGSGKKQQAKSTGSKSKAAVEPEITITRLDIRVGLITKAQKHPDADSLYVEEI 672

BLAST of MELO3C019532.jh1 vs. ExPASy TrEMBL
Match: A0A6J1HKT3 (Methionyl-tRNA synthetase OS=Cucurbita moschata OX=3662 GN=LOC111464461 PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 2.47e-05
Identity = 28/54 (51.85%), Postives = 34/54 (62.96%), Query Frame = 0

Query: 13  LKGSGKKQQAKNLHRWQTKSCCGTRNYNYKTERVGLITKAQKHPDADSLYVKKL 66
           + GSGKKQQAK+       +            RVGLITKAQKHPDADSLYV+++
Sbjct: 619 VSGSGKKQQAKSTGSKSKAAVEPEITITRLDIRVGLITKAQKHPDADSLYVEEI 672

BLAST of MELO3C019532.jh1 vs. ExPASy TrEMBL
Match: A0A6J1D7S3 (Methionyl-tRNA synthetase OS=Momordica charantia OX=3673 GN=LOC111017803 PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.18e-04
Identity = 27/54 (50.00%), Postives = 33/54 (61.11%), Query Frame = 0

Query: 13  LKGSGKKQQAKNLHRWQTKSCCGTRNYNYKTERVGLITKAQKHPDADSLYVKKL 66
           + G GKKQQAK+       +            RVGLITKAQKHPDADSLYV+++
Sbjct: 620 VSGGGKKQQAKSTGSKPKAAVEPEITITRLDIRVGLITKAQKHPDADSLYVEEI 673

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0037152.11.78e-33100.00DUF659 domain-containing protein [Cucumis melo var. makuwa] >TYK13921.1 DUF659 d... [more]
XP_038907195.13.73e-0554.55methionine--tRNA ligase, cytoplasmic [Benincasa hispida][more]
XP_004138937.15.10e-0551.85probable methionine--tRNA ligase [Cucumis sativus] >KGN61431.1 hypothetical prot... [more]
XP_022964435.15.10e-0551.85probable methionine--tRNA ligase [Cucurbita moschata][more]
XP_023000645.15.10e-0551.85probable methionine--tRNA ligase [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CQ518.60e-34100.00DUF659 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A0A0LN882.47e-0551.85Methionyl-tRNA synthetase OS=Cucumis sativus OX=3659 GN=Csa_2G120970 PE=3 SV=1[more]
A0A6J1KIY22.47e-0551.85Methionyl-tRNA synthetase OS=Cucurbita maxima OX=3661 GN=LOC111494895 PE=3 SV=1[more]
A0A6J1HKT32.47e-0551.85Methionyl-tRNA synthetase OS=Cucurbita moschata OX=3662 GN=LOC111464461 PE=3 SV=... [more]
A0A6J1D7S31.18e-0450.00Methionyl-tRNA synthetase OS=Momordica charantia OX=3673 GN=LOC111017803 PE=3 SV... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C019532.jh1.t1MELO3C019532.jh1.t1mRNA