MELO3C019532 (gene) Melon (DHL92) v4

Overview


Name	MELO3C019532
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Methionyl-tRNA synthetase
Location	chr06: 11636843 .. 11637280 (+)
RNA-Seq Expression	MELO3C019532
Synteny	MELO3C019532

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTTTAGGCAGCTGGATTTACCTCTGGAACGACATATATCCCTTTGTGAAGAAAAGGGAGACATCGAGACAGTAAAACAACCTTGGAAGATCCTACCTTCTGGTCATAAGATTGGCACACCAGAACAATTGTGGTATGCCTCATCGAAGATATTAAATTTACAAGAAGATATTCCTGTCATGAATGTTTTTCCAAATAGTTATATTCCATTGTTTCTTAAAGGCAGTGGAAAAAAGCAACAGGCAAAAAATCTACACAGGTGGCAAACCAAAAGCTGCTGTGGAACCAGAAATTACAATTACAAGACTGAGCGTGTTGGGTTAATTACAAAAGCTCAGAAGCATCCTGATGCTGATTCCCTATATGTGAAGAAATTGATGTGGGAGATCGCAACCTCGAACTGTTGTGAGCGGATTAGTCAAGTACATACCAATTGA

mRNA sequence

GTTTTTAGGCAGCTGGATTTACCTCTGGAACGACATATATCCCTTTGTGAAGAAAAGGGAGACATCGAGACAGTAAAACAACCTTGGAAGATCCTACCTTCTGGTCATAAGATTGGCACACCAGAACAATTGTGGTATGCCTCATCGAAGATATTAAATTTACAAGAAGATATTCCTGTCATGAATGTTTTTCCAAATAGTTATATTCCATTGTTTCTTAAAGGCAGTGGAAAAAAGCAACAGGCAAAAAATCTACACAGGTGGCAAACCAAAAGCTGCTGTGGAACCAGAAATTACAATTACAAGACTGAGCGTGTTGGGTTAATTACAAAAGCTCAGAAGCATCCTGATGCTGATTCCCTATATGTGAAGAAATTGATGTGGGAGATCGCAACCTCGAACTGTTGTGAGCGGATTAGTCAAGTACATACCAATTGA

Coding sequence (CDS)

GTTTTTAGGCAGCTGGATTTACCTCTGGAACGACATATATCCCTTTGTGAAGAAAAGGGAGACATCGAGACAGTAAAACAACCTTGGAAGATCCTACCTTCTGGTCATAAGATTGGCACACCAGAACAATTGTGGTATGCCTCATCGAAGATATTAAATTTACAAGAAGATATTCCTGTCATGAATGTTTTTCCAAATAGTTATATTCCATTGTTTCTTAAAGGCAGTGGAAAAAAGCAACAGGCAAAAAATCTACACAGGTGGCAAACCAAAAGCTGCTGTGGAACCAGAAATTACAATTACAAGACTGAGCGTGTTGGGTTAATTACAAAAGCTCAGAAGCATCCTGATGCTGATTCCCTATATGTGAAGAAATTGATGTGGGAGATCGCAACCTCGAACTGTTGTGAGCGGATTAGTCAAGTACATACCAATTGA

Protein sequence

VFRQLDLPLERHISLCEEKGDIETVKQPWKILPSGHKIGTPEQLWYASSKILNLQEDIPVMNVFPNSYIPLFLKGSGKKQQAKNLHRWQTKSCCGTRNYNYKTERVGLITKAQKHPDADSLYVKKLMWEIATSNCCERISQVHTN

Homology

[Close]

BLAST of MELO3C019532 vs. NCBI nr
Match: KAA0037152.1 (DUF659 domain-containing protein [Cucumis melo var. makuwa] >TYK13921.1 DUF659 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 206.8 bits (525), Expect = 1.2e-49
Identity = 103/135 (76.30%), Postives = 103/135 (76.30%), Query Frame = 0


Query: 1   VFRQLDLPLERHISLCEEKGDIETVKQPWKILPSGHKIGTPEQLWYASSKILNLQEDIPV 60
           VFRQLDLPLERHISLCEEKGDIETVKQPWKILPSGHKIGTPEQL                
Sbjct: 286 VFRQLDLPLERHISLCEEKGDIETVKQPWKILPSGHKIGTPEQL---------------- 345

Query: 61  MNVFPNSYIPLFLKGSGKKQQAKNLHRWQTKSCCGTRNYNYKTERVGLITKAQKHPDADS 120
                           GKKQQAKNLHRWQTKSCCGTRNYNYKTERVGLITKAQKHPDADS
Sbjct: 346 ---------------CGKKQQAKNLHRWQTKSCCGTRNYNYKTERVGLITKAQKHPDADS 389

Query: 121 LYVKKLMWEIATSNC 136
           LYVKKLMWEIATSNC
Sbjct: 406 LYVKKLMWEIATSNC 389

[Close]

BLAST of MELO3C019532 vs. NCBI nr
Match: XP_008457156.1 (PREDICTED: methionine--tRNA ligase, cytoplasmic [Cucumis melo])

HSP 1 Score: 125.6 bits (314), Expect = 3.6e-25
Identity = 72/140 (51.43%), Postives = 82/140 (58.57%), Query Frame = 0


Query: 1   VFRQLDLPLERHISLCEEKGDIETVKQPWKILPSGHKIGTPEQLW--------------Y 60
           VFRQLDLPLERHISLCEEKGDIETVKQPWKILPSGHKIGTPE L+              +
Sbjct: 531 VFRQLDLPLERHISLCEEKGDIETVKQPWKILPSGHKIGTPEPLFKELKDEEVELYRDKF 590

Query: 61  ASSKILNLQEDIPVMNVFPNSYIPLFLKGSGKKQQAKNLHRWQTKSCCGTRNYNYKTERV 120
           A S+   +                  + G GKKQQAK+       +            RV
Sbjct: 591 AGSQAQRIVRAEAEAEKLAAQLKKTNVSGGGKKQQAKSTGGKPKAAVEQEITITRLDIRV 650

Query: 121 GLITKAQKHPDADSLYVKKL 127
           GLITKAQKHPDADSLYV+++
Sbjct: 651 GLITKAQKHPDADSLYVEEI 670

[Close]

BLAST of MELO3C019532 vs. NCBI nr
Match: KAA0039588.1 (methionine--tRNA ligase [Cucumis melo var. makuwa] >TYK01713.1 methionine--tRNA ligase [Cucumis melo var. makuwa])

HSP 1 Score: 125.6 bits (314), Expect = 3.6e-25
Identity = 72/140 (51.43%), Postives = 82/140 (58.57%), Query Frame = 0


Query: 1   VFRQLDLPLERHISLCEEKGDIETVKQPWKILPSGHKIGTPEQLW--------------Y 60
           VFRQLDLPLERHISLCEEKGDIETVKQPWKILPSGHKIGTPE L+              +
Sbjct: 531 VFRQLDLPLERHISLCEEKGDIETVKQPWKILPSGHKIGTPEPLFKELKDEEVELYRDKF 590

Query: 61  ASSKILNLQEDIPVMNVFPNSYIPLFLKGSGKKQQAKNLHRWQTKSCCGTRNYNYKTERV 120
           A S+   +                  + G GKKQQAK+       +            RV
Sbjct: 591 AGSQAQRIVRAEAEAEKLAAQLKKTNVSGGGKKQQAKSTGGKPKAAVEQEITITRLDIRV 650

Query: 121 GLITKAQKHPDADSLYVKKL 127
           GLITKAQKHPDADSLYV+++
Sbjct: 651 GLITKAQKHPDADSLYVEEI 670

[Close]

BLAST of MELO3C019532 vs. NCBI nr
Match: XP_004138937.1 (probable methionine--tRNA ligase [Cucumis sativus] >KGN61431.1 hypothetical protein Csa_006196 [Cucumis sativus])

HSP 1 Score: 124.8 bits (312), Expect = 6.1e-25
Identity = 72/140 (51.43%), Postives = 82/140 (58.57%), Query Frame = 0


Query: 1   VFRQLDLPLERHISLCEEKGDIETVKQPWKILPSGHKIGTPEQLW--------------Y 60
           VFRQLDLPLERHISLCEEKGDIETVKQPWKILPSG KIGTPE L+              +
Sbjct: 531 VFRQLDLPLERHISLCEEKGDIETVKQPWKILPSGQKIGTPEPLFKELKDEEVELYRDKF 590

Query: 61  ASSKILNLQEDIPVMNVFPNSYIPLFLKGSGKKQQAKNLHRWQTKSCCGTRNYNYKTERV 120
           A S+   +                  + G GKKQQAK+    Q  +            RV
Sbjct: 591 AGSQAQRIVRAEAEAEKLAAQLKKTNVSGGGKKQQAKSTGGKQKAAVEQEITITRLDIRV 650

Query: 121 GLITKAQKHPDADSLYVKKL 127
           GLITKAQKHPDADSLYV+++
Sbjct: 651 GLITKAQKHPDADSLYVEEI 670

[Close]

BLAST of MELO3C019532 vs. NCBI nr
Match: XP_038907195.1 (methionine--tRNA ligase, cytoplasmic [Benincasa hispida])

HSP 1 Score: 119.0 bits (297), Expect = 3.4e-23
Identity = 71/141 (50.35%), Postives = 84/141 (59.57%), Query Frame = 0


Query: 1   VFRQLDLPLERHISLCEEKGDIETVKQPWKILPSGHKIGTPEQLW--------------Y 60
           VFRQLDLP  RHISLCEEKGDIE  KQPWKILPSGHKIGTPE L+              +
Sbjct: 532 VFRQLDLPPGRHISLCEEKGDIEKAKQPWKILPSGHKIGTPEPLFKELKDEEVELYRDKF 591

Query: 61  ASSKILNLQEDIPVMNVFPNSYIPLFLKGSGKKQQAKNLHRWQTKSCCGTRNYNYKTE-R 120
           A S+   +                  + GSGKKQQAK+    + K+   T     + + R
Sbjct: 592 AGSQAQRIVRAEAEAEKIAAQLKKTNVSGSGKKQQAKSTGS-KPKAAVETEITITRLDIR 651

Query: 121 VGLITKAQKHPDADSLYVKKL 127
           VGLITKAQKHPDADSLYV+++
Sbjct: 652 VGLITKAQKHPDADSLYVEEI 671

[Close]

BLAST of MELO3C019532 vs. ExPASy Swiss-Prot
Match: Q9ZTS1 (Probable methionine--tRNA ligase OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0508700 PE=2 SV=2)

HSP 1 Score: 75.5 bits (184), Expect = 5.6e-13
Identity = 50/147 (34.01%), Postives = 70/147 (47.62%), Query Frame = 0


Query: 1   VFRQLDLPLERHISLCEEKGDIETVKQPWKILPSGHKIGTPEQLWYASSKILNLQEDIPV 60
           V  QL++  E  +S C++KG+I   K+PW  + +GHKIG P  L+    K L  +E    
Sbjct: 525 VLLQLNMTPEESLSFCDDKGEIAKAKRPWDFVSAGHKIGKPSPLF----KELKDEEVESF 584

Query: 61  MNVFPNSYIPLFLKG-------------SGKKQQAKNLHRWQTKSCCGTRNYNYKTE--- 120
            N F  S      K               G K       + Q K   G+++ N + +   
Sbjct: 585 RNKFAGSQAERSSKAQADAEAKKVADKLKGTKLSDGGQKKEQKKQSGGSKSKNAEVDVTV 644

Query: 121 -----RVGLITKAQKHPDADSLYVKKL 127
                RVGLI KAQKHPDADSLYV+++
Sbjct: 645 AKLDIRVGLIRKAQKHPDADSLYVEEI 667

[Close]

BLAST of MELO3C019532 vs. ExPASy Swiss-Prot
Match: Q9SVN5 (Methionine--tRNA ligase, cytoplasmic OS=Arabidopsis thaliana OX=3702 GN=At4g13780 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.9e-09
Identity = 44/148 (29.73%), Postives = 66/148 (44.59%), Query Frame = 0


Query: 1   VFRQLDLPLERHISLCEEKGDIETVKQPWKILPSGHKIGTPEQLW--------------- 60
           VF+QL+LP +   SL +E+G++    +PW ILP  H+IGTP+ L+               
Sbjct: 526 VFKQLNLPPQ--FSLSDERGEVLLASRPWDILPPSHRIGTPQPLFKELENDEVARYREKF 585

Query: 61  -------YASSKILNLQEDIPVMNVFPNSYIPLFLKGSGKKQQAKNLHRWQTKSCCGTRN 120
                   A  +  NL + +    +          KG GK +      R  T +      
Sbjct: 586 AGSQSDRRARDEAANLADQLNKTKLSDAKKQKASSKGGGKPKPQPAADREITMARLDI-- 645

Query: 121 YNYKTERVGLITKAQKHPDADSLYVKKL 127
                 RVG I KA+KHP AD+LYV+++
Sbjct: 646 ------RVGKIVKAEKHPKADALYVEEI 663

[Close]

BLAST of MELO3C019532 vs. ExPASy TrEMBL
Match: A0A5D3CQ51 (DUF659 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G001190 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 5.9e-50
Identity = 103/135 (76.30%), Postives = 103/135 (76.30%), Query Frame = 0


Query: 1   VFRQLDLPLERHISLCEEKGDIETVKQPWKILPSGHKIGTPEQLWYASSKILNLQEDIPV 60
           VFRQLDLPLERHISLCEEKGDIETVKQPWKILPSGHKIGTPEQL                
Sbjct: 286 VFRQLDLPLERHISLCEEKGDIETVKQPWKILPSGHKIGTPEQL---------------- 345

Query: 61  MNVFPNSYIPLFLKGSGKKQQAKNLHRWQTKSCCGTRNYNYKTERVGLITKAQKHPDADS 120
                           GKKQQAKNLHRWQTKSCCGTRNYNYKTERVGLITKAQKHPDADS
Sbjct: 346 ---------------CGKKQQAKNLHRWQTKSCCGTRNYNYKTERVGLITKAQKHPDADS 389

Query: 121 LYVKKLMWEIATSNC 136
           LYVKKLMWEIATSNC
Sbjct: 406 LYVKKLMWEIATSNC 389

[Close]

BLAST of MELO3C019532 vs. ExPASy TrEMBL
Match: A0A5A7T9N5 (Methionyl-tRNA synthetase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00380 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.7e-25
Identity = 72/140 (51.43%), Postives = 82/140 (58.57%), Query Frame = 0


Query: 1   VFRQLDLPLERHISLCEEKGDIETVKQPWKILPSGHKIGTPEQLW--------------Y 60
           VFRQLDLPLERHISLCEEKGDIETVKQPWKILPSGHKIGTPE L+              +
Sbjct: 531 VFRQLDLPLERHISLCEEKGDIETVKQPWKILPSGHKIGTPEPLFKELKDEEVELYRDKF 590

Query: 61  ASSKILNLQEDIPVMNVFPNSYIPLFLKGSGKKQQAKNLHRWQTKSCCGTRNYNYKTERV 120
           A S+   +                  + G GKKQQAK+       +            RV
Sbjct: 591 AGSQAQRIVRAEAEAEKLAAQLKKTNVSGGGKKQQAKSTGGKPKAAVEQEITITRLDIRV 650

Query: 121 GLITKAQKHPDADSLYVKKL 127
           GLITKAQKHPDADSLYV+++
Sbjct: 651 GLITKAQKHPDADSLYVEEI 670

[Close]

BLAST of MELO3C019532 vs. ExPASy TrEMBL
Match: A0A1S3C4U5 (Methionyl-tRNA synthetase OS=Cucumis melo OX=3656 GN=LOC103496895 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.7e-25
Identity = 72/140 (51.43%), Postives = 82/140 (58.57%), Query Frame = 0


Query: 1   VFRQLDLPLERHISLCEEKGDIETVKQPWKILPSGHKIGTPEQLW--------------Y 60
           VFRQLDLPLERHISLCEEKGDIETVKQPWKILPSGHKIGTPE L+              +
Sbjct: 531 VFRQLDLPLERHISLCEEKGDIETVKQPWKILPSGHKIGTPEPLFKELKDEEVELYRDKF 590

Query: 61  ASSKILNLQEDIPVMNVFPNSYIPLFLKGSGKKQQAKNLHRWQTKSCCGTRNYNYKTERV 120
           A S+   +                  + G GKKQQAK+       +            RV
Sbjct: 591 AGSQAQRIVRAEAEAEKLAAQLKKTNVSGGGKKQQAKSTGGKPKAAVEQEITITRLDIRV 650

Query: 121 GLITKAQKHPDADSLYVKKL 127
           GLITKAQKHPDADSLYV+++
Sbjct: 651 GLITKAQKHPDADSLYVEEI 670

[Close]

BLAST of MELO3C019532 vs. ExPASy TrEMBL
Match: A0A0A0LN88 (Methionyl-tRNA synthetase OS=Cucumis sativus OX=3659 GN=Csa_2G120970 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.0e-25
Identity = 72/140 (51.43%), Postives = 82/140 (58.57%), Query Frame = 0


Query: 1   VFRQLDLPLERHISLCEEKGDIETVKQPWKILPSGHKIGTPEQLW--------------Y 60
           VFRQLDLPLERHISLCEEKGDIETVKQPWKILPSG KIGTPE L+              +
Sbjct: 531 VFRQLDLPLERHISLCEEKGDIETVKQPWKILPSGQKIGTPEPLFKELKDEEVELYRDKF 590

Query: 61  ASSKILNLQEDIPVMNVFPNSYIPLFLKGSGKKQQAKNLHRWQTKSCCGTRNYNYKTERV 120
           A S+   +                  + G GKKQQAK+    Q  +            RV
Sbjct: 591 AGSQAQRIVRAEAEAEKLAAQLKKTNVSGGGKKQQAKSTGGKQKAAVEQEITITRLDIRV 650

Query: 121 GLITKAQKHPDADSLYVKKL 127
           GLITKAQKHPDADSLYV+++
Sbjct: 651 GLITKAQKHPDADSLYVEEI 670

[Close]

BLAST of MELO3C019532 vs. ExPASy TrEMBL
Match: A0A6J1KIY2 (Methionyl-tRNA synthetase OS=Cucurbita maxima OX=3661 GN=LOC111494895 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 3.6e-23
Identity = 66/140 (47.14%), Postives = 81/140 (57.86%), Query Frame = 0


Query: 1   VFRQLDLPLERHISLCEEKGDIETVKQPWKILPSGHKIGTPEQLW--------------Y 60
           VF+QL++P+ERH+SLCEEKGDIE  KQPWKILPSGHKIGTPE L+              +
Sbjct: 533 VFKQLNIPVERHMSLCEEKGDIERAKQPWKILPSGHKIGTPEPLFKELKDEEVELYRDKF 592

Query: 61  ASSKILNLQEDIPVMNVFPNSYIPLFLKGSGKKQQAKNLHRWQTKSCCGTRNYNYKTERV 120
           A S+   +                  + GSGKKQQAK+       +            RV
Sbjct: 593 AGSQAQRIVRAEAEAEKLAAQLKSTNVSGSGKKQQAKSTGSKSKAAVEPEITITRLDIRV 652

Query: 121 GLITKAQKHPDADSLYVKKL 127
           GLITKAQKHPDADSLYV+++
Sbjct: 653 GLITKAQKHPDADSLYVEEI 672

[Close]

BLAST of MELO3C019532 vs. TAIR 10
Match: AT4G13780.1 (methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative )

HSP 1 Score: 63.2 bits (152), Expect = 2.0e-10
Identity = 44/148 (29.73%), Postives = 66/148 (44.59%), Query Frame = 0


Query: 1   VFRQLDLPLERHISLCEEKGDIETVKQPWKILPSGHKIGTPEQLW--------------- 60
           VF+QL+LP +   SL +E+G++    +PW ILP  H+IGTP+ L+               
Sbjct: 526 VFKQLNLPPQ--FSLSDERGEVLLASRPWDILPPSHRIGTPQPLFKELENDEVARYREKF 585

Query: 61  -------YASSKILNLQEDIPVMNVFPNSYIPLFLKGSGKKQQAKNLHRWQTKSCCGTRN 120
                   A  +  NL + +    +          KG GK +      R  T +      
Sbjct: 586 AGSQSDRRARDEAANLADQLNKTKLSDAKKQKASSKGGGKPKPQPAADREITMARLDI-- 645

Query: 121 YNYKTERVGLITKAQKHPDADSLYVKKL 127
                 RVG I KA+KHP AD+LYV+++
Sbjct: 646 ------RVGKIVKAEKHPKADALYVEEI 663

The following BLAST results are available for this feature:

BLAST of MELO3C019532 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0037152.1	1.2e-49	76.30	DUF659 domain-containing protein [Cucumis melo var. makuwa] >TYK13921.1 DUF659 d...	[more]
XP_008457156.1	3.6e-25	51.43	PREDICTED: methionine--tRNA ligase, cytoplasmic [Cucumis melo]	[more]
KAA0039588.1	3.6e-25	51.43	methionine--tRNA ligase [Cucumis melo var. makuwa] >TYK01713.1 methionine--tRNA ...	[more]
XP_004138937.1	6.1e-25	51.43	probable methionine--tRNA ligase [Cucumis sativus] >KGN61431.1 hypothetical prot...	[more]
XP_038907195.1	3.4e-23	50.35	methionine--tRNA ligase, cytoplasmic [Benincasa hispida]	[more]

BLAST of MELO3C019532 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZTS1	5.6e-13	34.01	Probable methionine--tRNA ligase OS=Oryza sativa subsp. japonica OX=39947 GN=Os0...	[more]
Q9SVN5	2.9e-09	29.73	Methionine--tRNA ligase, cytoplasmic OS=Arabidopsis thaliana OX=3702 GN=At4g1378...	[more]

BLAST of MELO3C019532 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CQ51	5.9e-50	76.30	DUF659 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5A7T9N5	1.7e-25	51.43	Methionyl-tRNA synthetase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3C4U5	1.7e-25	51.43	Methionyl-tRNA synthetase OS=Cucumis melo OX=3656 GN=LOC103496895 PE=3 SV=1	[more]
A0A0A0LN88	3.0e-25	51.43	Methionyl-tRNA synthetase OS=Cucumis sativus OX=3659 GN=Csa_2G120970 PE=3 SV=1	[more]
A0A6J1KIY2	3.6e-23	47.14	Methionyl-tRNA synthetase OS=Cucurbita maxima OX=3661 GN=LOC111494895 PE=3 SV=1	[more]

BLAST of MELO3C019532 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G13780.1	2.0e-10	29.73	methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS,...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019532.1	MELO3C019532.1	mRNA