MELO3C019523.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C019523.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionTranscription factor bHLH36
Locationchr06: 11968211 .. 11968515 (-)
RNA-Seq ExpressionMELO3C019523.jh1
SyntenyMELO3C019523.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAAAGGCGTTGTTGAGTTAGGAAGAGAAAGGGAGAGACAAAGAAGACAAGAAATCGGTGCTCTTTATATGTCTCTAAGAACTTTACTTCCTCTTGAATTGATCAAGGTAAATTGTGGGACTGTGCACAGGGGAAGAGATAAACGGAGGGAGAAGAAATGAAAAATGAAAGATCAAGAACTCAATGGCGACGATATGGGTCTCCTCGCCGTGGGTCTCTAGCACCGAGAAGAAAGGACGTGGAGATGAGAAGAATGGGGTTAAGGTTGGGGTTTTCATCATGCGTCGTTCGTTGTTCGTGA

mRNA sequence

ATGGACAAAGGCGTTGTTGAGTTAGGAAGAGAAAGGGAGAGACAAAGAAGACAAGAAATCGGTGCTCTTTATATGTCTCTAAGAACTTTACTTCCTCTTGAATTGATCAAGGTAAATTGTGGGACTGTGCACAGGGGAAGAGATAAACGGAGGGAGAAGAAATGAAAAATGAAAGATCAAGAACTCAATGGCGACGATATGGGTCTCCTCGCCGTGGGTCTCTAGCACCGAGAAGAAAGGACGTGGAGATGAGAAGAATGGGGTTAAGGTTGGGGTTTTCATCATGCGTCGTTCGTTGTTCGTGA

Coding sequence (CDS)

ATGGACAAAGGCGTTGTTGAGTTAGGAAGAGAAAGGGAGAGACAAAGAAGACAAGAAATCGGTGCTCTTTATATGTCTCTAAGAACTTTACTTCCTCTTGAATTGATCAAGGTAAATTGTGGGACTGTGCACAGGGGAAGAGATAAACGGAGGGAGAAGAAATGA

Protein sequence

MDKGVVELGRERERQRRQEIGALYMSLRTLLPLELIKVNCGTVHRGRDKRREKK
Homology
BLAST of MELO3C019523.jh1 vs. NCBI nr
Match: TYK30150.1 (transcription factor bHLH36 [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 6.52e-23
Identity = 48/54 (88.89%), Postives = 50/54 (92.59%), Query Frame = 0

Query: 1  MDKGVVELGRERERQRRQEIGALYMSLRTLLPLELIKVNCGTVHRGRDKRREKK 54
          MDKG+VELGRERERQRRQEIGALYMSLRTLLPLE IKV  GT+HRGRDK REKK
Sbjct: 1  MDKGIVELGRERERQRRQEIGALYMSLRTLLPLEFIKVIYGTLHRGRDKWREKK 54

BLAST of MELO3C019523.jh1 vs. NCBI nr
Match: KAA0033316.1 (transcription factor bHLH36-like [Cucumis melo var. makuwa] >TYK21590.1 transcription factor bHLH36-like [Cucumis melo var. makuwa])

HSP 1 Score: 90.5 bits (223), Expect = 7.11e-22
Identity = 47/54 (87.04%), Postives = 48/54 (88.89%), Query Frame = 0

Query: 1  MDKGVVELGRERERQRRQEIGALYMSLRTLLPLELIKVNCGTVHRGRDKRREKK 54
          MDK VVELGRERERQRRQEI ALYM LR LLPLE IKV CGTVHRGRDK+REKK
Sbjct: 1  MDKDVVELGRERERQRRQEISALYMPLRILLPLEFIKVICGTVHRGRDKQREKK 54

BLAST of MELO3C019523.jh1 vs. NCBI nr
Match: KAA0065871.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK20283.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 7.40e-17
Identity = 44/54 (81.48%), Postives = 47/54 (87.04%), Query Frame = 0

Query: 1  MDKGVVELGRERERQRRQEIGALYMSLRTLLPLELIKVNCGTVHRGRDKRREKK 54
          MDKGVV+L RERERQRRQEIGALYM++RTLL LE IKV CG VHR RDK REKK
Sbjct: 1  MDKGVVKLERERERQRRQEIGALYMTIRTLLSLEFIKVICGIVHRERDKWREKK 54

BLAST of MELO3C019523.jh1 vs. NCBI nr
Match: KAA0044825.1 (transcription factor bHLH36-like [Cucumis melo var. makuwa] >TYK16639.1 transcription factor bHLH36-like [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 5.51e-14
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 0

Query: 1  MDKGVVELGRERERQRRQEIGALYMSLRTLLPLELIKVN 39
          MDKGVVELGRERERQRRQEI ALYMSLRTLLPLE IKV+
Sbjct: 6  MDKGVVELGRERERQRRQEISALYMSLRTLLPLEFIKVS 44

BLAST of MELO3C019523.jh1 vs. NCBI nr
Match: XP_022967981.1 (transcription factor bHLH118-like [Cucurbita maxima])

HSP 1 Score: 52.4 bits (124), Expect = 4.43e-06
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 0

Query: 10  RERERQRRQEIGALYMSLRTLLPLELIK 37
           RERERQRRQE+GALYMSLRTLLPLE IK
Sbjct: 79  RERERQRRQEMGALYMSLRTLLPLEFIK 106

BLAST of MELO3C019523.jh1 vs. ExPASy TrEMBL
Match: A0A5D3E3K5 (Transcription factor bHLH36 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001340 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.16e-23
Identity = 48/54 (88.89%), Postives = 50/54 (92.59%), Query Frame = 0

Query: 1  MDKGVVELGRERERQRRQEIGALYMSLRTLLPLELIKVNCGTVHRGRDKRREKK 54
          MDKG+VELGRERERQRRQEIGALYMSLRTLLPLE IKV  GT+HRGRDK REKK
Sbjct: 1  MDKGIVELGRERERQRRQEIGALYMSLRTLLPLEFIKVIYGTLHRGRDKWREKK 54

BLAST of MELO3C019523.jh1 vs. ExPASy TrEMBL
Match: A0A5A7STJ5 (Transcription factor bHLH36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold275G00940 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.44e-22
Identity = 47/54 (87.04%), Postives = 48/54 (88.89%), Query Frame = 0

Query: 1  MDKGVVELGRERERQRRQEIGALYMSLRTLLPLELIKVNCGTVHRGRDKRREKK 54
          MDK VVELGRERERQRRQEI ALYM LR LLPLE IKV CGTVHRGRDK+REKK
Sbjct: 1  MDKDVVELGRERERQRRQEISALYMPLRILLPLEFIKVICGTVHRGRDKQREKK 54

BLAST of MELO3C019523.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VJK9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold708G00020 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.58e-17
Identity = 44/54 (81.48%), Postives = 47/54 (87.04%), Query Frame = 0

Query: 1  MDKGVVELGRERERQRRQEIGALYMSLRTLLPLELIKVNCGTVHRGRDKRREKK 54
          MDKGVV+L RERERQRRQEIGALYM++RTLL LE IKV CG VHR RDK REKK
Sbjct: 1  MDKGVVKLERERERQRRQEIGALYMTIRTLLSLEFIKVICGIVHRERDKWREKK 54

BLAST of MELO3C019523.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TTV0 (Transcription factor bHLH36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004670 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.67e-14
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 0

Query: 1  MDKGVVELGRERERQRRQEIGALYMSLRTLLPLELIKVN 39
          MDKGVVELGRERERQRRQEI ALYMSLRTLLPLE IKV+
Sbjct: 6  MDKGVVELGRERERQRRQEISALYMSLRTLLPLEFIKVS 44

BLAST of MELO3C019523.jh1 vs. ExPASy TrEMBL
Match: A0A6J1HTL2 (transcription factor bHLH118-like OS=Cucurbita maxima OX=3661 GN=LOC111467355 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.14e-06
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 0

Query: 10  RERERQRRQEIGALYMSLRTLLPLELIK 37
           RERERQRRQE+GALYMSLRTLLPLE IK
Sbjct: 79  RERERQRRQEMGALYMSLRTLLPLEFIK 106

BLAST of MELO3C019523.jh1 vs. TAIR 10
Match: AT5G51780.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 41.2 bits (95), Expect = 3.1e-04
Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = 0

Query: 10 RERERQRRQEIGALYMSLRTLLPLELIK 38
          RE ERQRRQE+ +LY SLR+LLPL  IK
Sbjct: 7  RETERQRRQEMASLYASLRSLLPLHFIK 34

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK30150.16.52e-2388.89transcription factor bHLH36 [Cucumis melo var. makuwa][more]
KAA0033316.17.11e-2287.04transcription factor bHLH36-like [Cucumis melo var. makuwa] >TYK21590.1 transcri... [more]
KAA0065871.17.40e-1781.48retrotransposon protein [Cucumis melo var. makuwa] >TYK20283.1 retrotransposon p... [more]
KAA0044825.15.51e-1492.31transcription factor bHLH36-like [Cucumis melo var. makuwa] >TYK16639.1 transcri... [more]
XP_022967981.14.43e-0692.86transcription factor bHLH118-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3E3K53.16e-2388.89Transcription factor bHLH36 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5A7STJ53.44e-2287.04Transcription factor bHLH36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A5A7VJK93.58e-1781.48Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TTV02.67e-1492.31Transcription factor bHLH36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A6J1HTL22.14e-0692.86transcription factor bHLH118-like OS=Cucurbita maxima OX=3661 GN=LOC111467355 PE... [more]
Match NameE-valueIdentityDescription
AT5G51780.13.1e-0471.43basic helix-loop-helix (bHLH) DNA-binding superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 11..48
e-value: 8.4E-5
score: 22.5
IPR036638Helix-loop-helix DNA-binding domain superfamilySUPERFAMILY47459HLH, helix-loop-helix DNA-binding domaincoord: 10..34

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C019523.jh1.t1MELO3C019523.jh1.t1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046983 protein dimerization activity