MELO3C019445 (gene) Melon (DHL92) v4

Overview


Name	MELO3C019445
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	DNA helicase
Location	chr06: 9927819 .. 9929145 (-)
RNA-Seq Expression	MELO3C019445
Synteny	MELO3C019445

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTTTGAAGTTGACAACAGCGATTAAAATATGTACATCCAACTTAAATCGATTACTTTTTAGGAATGTGGACATAAAGCAGCCTTTTATCATGGTAGCATGGATCCCGCCCAACGCTCCTTCGTTCAGAAGCAATGGAGCAAAGATGAAATTAATATAATTTCCGCTACAGTGGCTTTTGGAATGGTGGGTATAACTGATCATTGCTTGTTGAAATATGAATTTGTATAGAAATAACAATCAACTATGCACTTATTTGGATATTTCAGGCATCAACAAGCCAAATGTTCGGTTTGTCATTCACCATTCTCTTCCAAAGTACCATCAGGTAATTAATTGTATACTGCTTCATTTAGTTGGTATTGTCCATGTTAATAGTCTTCATTCAAAATATTTTTAATTCATCTTGAGAACATAAAAACTACAATTGGTCTTTGTTTTACCTCCCCCCCTCACCCCCATTTGTCTTTTACCAAAATAAACAGTGCTCATAGAGCTGCTGGATTATCGATAAAATTGTTTCTTATTATAATGTTCTTGGCTTTCGGTGTGTTTCTAATGTTTTAGGAGTGTGGCCGTGCAGGCAGAGATGGTATGCCTTCATCCCGTGTGTTATATTATAGTTACAGTGATTATGTAAGTTGTGATCATGGACTAACGTCTTACATTATCTAGCTGTAAAGGGTATAATATTACATTCACAAGGTTCTTGAAAAGTGGTTTGGATTCTAGTATCCATTGCTTATTGCTTACTGGCTCTTAAACTGATGAGTGGAGGCAAATTTAATATAATATCTAATGCCTATGTTTGTCAAAACTTCTTGAACATGTATGCAGATACGAGTCAAGCATATGATTAGCCAAGGAGCCACTGAGCAAAGTCCTCTCGTATCTGGATATAATTGTACCAATCTGGGCAGCTCTAGAAGGATACTAAAAGACCAACACTGAGAATCTTTTACGAATGGTGAGTGAGTTCTACCATTCTTTTGTTCCTTTTTTTTTTTTTTTAAAGATATTATTAGAATATAAAATCTTAATCGATTTGTTGCTTATTTTAGGTGAGTTACTGTGAAAATGATGTTGATTGCCGGCGTTTGCTGCAACTTGTCCATTTTGGGGAGAAGTTTGATCCTGGAATTGCAAGAAAACATGTGATAATTGTTTGAAGTCCACAAATCTTATAGAAAAGGATGTCAGTGATGTCACTAAGCAACTGGTCTGGTGCAAAATTTTGCAATGTTCTGTTAAACTTATTCTATTATAGGTTGTTAAGTTAATTCAAAACAGATTTGCAAGGTTAAATTTTGTTCATTTTGAAGGTTGA

mRNA sequence

CTTTTTGAAGTTGACAACAGCGATTAAAATATGTACATCCAACTTAAATCGATTACTTTTTAGGAATGTGGACATAAAGCAGCCTTTTATCATGGTAGCATGGATCCCGCCCAACGCTCCTTCGTTCAGAAGCAATGGAGCAAAGATGAAATTAATATAATTTCCGCTACAGTGGCTTTTGGAATGGCATCAACAAGCCAAATGTTCGGTTTGTCATTCACCATTCTCTTCCAAAGTACCATCAGGAGTGTGGCCGTGCAGGCAGAGATGATACGAGTCAAGCATATGATTAGCCAAGGAGCCACTGAGCAAAGTCCTCTCGTATCTGGATATAATTGTACCAATCTGGGCAGCTCTAGAAGGATACTAAAAGACCAACACTGAGAATCTTTTACGAATGGTGAGTTACTGTGAAAATGATGTTGATTGCCGGCGTTTGCTGCAACTTGTCCATTTTGGGGAGAAGTTTGATCCTGGAATTGCAAGAAAACATGTGATAATTGTTTGAAGTCCACAAATCTTATAGAAAAGGATGTCAGTGATGTCACTAAGCAACTGGTCTGGTGCAAAATTTTGCAATGTTCTGTTAAACTTATTCTATTATAGGTTGTTAAGTTAATTCAAAACAGATTTGCAAGGTTAAATTTTGTTCATTTTGAAGGTTGA

Coding sequence (CDS)

ATGGATCCCGCCCAACGCTCCTTCGTTCAGAAGCAATGGAGCAAAGATGAAATTAATATAATTTCCGCTACAGTGGCTTTTGGAATGGCATCAACAAGCCAAATGTTCGGTTTGTCATTCACCATTCTCTTCCAAAGTACCATCAGGAGTGTGGCCGTGCAGGCAGAGATGATACGAGTCAAGCATATGATTAGCCAAGGAGCCACTGAGCAAAGTCCTCTCGTATCTGGATATAATTGTACCAATCTGGGCAGCTCTAGAAGGATACTAAAAGACCAACACTGA

Protein sequence

MDPAQRSFVQKQWSKDEINIISATVAFGMASTSQMFGLSFTILFQSTIRSVAVQAEMIRVKHMISQGATEQSPLVSGYNCTNLGSSRRILKDQH

Homology

[Close]

BLAST of MELO3C019445 vs. NCBI nr
Match: XP_008456064.1 (PREDICTED: ATP-dependent DNA helicase Q-like 4A isoform X2 [Cucumis melo])

HSP 1 Score: 183.3 bits (464), Expect = 9.4e-43
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MDPAQRSFVQKQWSKDEINIISATVAFGMASTSQMFGLSFTILFQSTIRSVAVQAEMIRV 60
          MDPAQRSFVQKQWSKDEINIISATVAFGMASTSQMFGLSFTILFQSTIRSVAVQAEMIRV
Sbjct: 1  MDPAQRSFVQKQWSKDEINIISATVAFGMASTSQMFGLSFTILFQSTIRSVAVQAEMIRV 60

Query: 61 KHMISQGATEQSPLVSGYNCTNLGSSRRILKDQH 95
          KHMISQGATEQSPLVSGYNCTNLGSSRRILKDQH
Sbjct: 61 KHMISQGATEQSPLVSGYNCTNLGSSRRILKDQH 94

[Close]

BLAST of MELO3C019445 vs. NCBI nr
Match: XP_008456063.1 (PREDICTED: ATP-dependent DNA helicase Q-like 4B isoform X1 [Cucumis melo])

HSP 1 Score: 117.5 bits (293), Expect = 6.3e-23
Identity = 69/109 (63.30%), Postives = 73/109 (66.97%), Query Frame = 0


Query: 1   MDPAQRSFVQKQWSKDEINIISATVAFGMASTS---------------QMFGLSFTILFQ 60
           MDPAQRSFVQKQWSKDEINIISATVAFGM                   Q  G +      
Sbjct: 1   MDPAQRSFVQKQWSKDEINIISATVAFGMGINKPNVRFVIHHSLPKYHQECGRAGRDGMP 60

Query: 61  STIRSVAVQAEMIRVKHMISQGATEQSPLVSGYNCTNLGSSRRILKDQH 95
           S+       ++ IRVKHMISQGATEQSPLVSGYNCTNLGSSRRILKDQH
Sbjct: 61  SSRVLYYSYSDYIRVKHMISQGATEQSPLVSGYNCTNLGSSRRILKDQH 109

[Close]

BLAST of MELO3C019445 vs. NCBI nr
Match: XP_008456059.1 (PREDICTED: ATP-dependent DNA helicase Q-like 4A isoform X2 [Cucumis melo])

HSP 1 Score: 104.8 bits (260), Expect = 4.3e-19
Identity = 61/91 (67.03%), Postives = 68/91 (74.73%), Query Frame = 0


Query: 1   MDPAQRSFVQKQWSKDEINIISATVAFGMASTSQMFGLSFTILFQSTIRSVAVQAEMIRV 60
           MDPAQRSF+QKQWSKDEINII ATVAFGM        + F ++  S  +S+      IRV
Sbjct: 711 MDPAQRSFIQKQWSKDEINIICATVAFGMGINKP--DVRF-VIHHSLPKSIE-GYHQIRV 770

Query: 61  KHMISQGATEQSPLVSGYNCTNLGSSRRILK 92
           KHMISQGATEQSPLVSGYN TNLGSS RIL+
Sbjct: 771 KHMISQGATEQSPLVSGYNRTNLGSSGRILE 797

[Close]

BLAST of MELO3C019445 vs. NCBI nr
Match: XP_008456062.1 (PREDICTED: ATP-dependent DNA helicase Q-like 4A isoform X5 [Cucumis melo])

HSP 1 Score: 98.6 bits (244), Expect = 3.0e-17
Identity = 61/110 (55.45%), Postives = 68/110 (61.82%), Query Frame = 0


Query: 1   MDPAQRSFVQKQWSKDEINIISATVAFGMASTS-------------------QMFGLSFT 60
           MDPAQRSF+QKQWSKDEINII ATVAFGM                       Q  G +  
Sbjct: 346 MDPAQRSFIQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGR 405

Query: 61  ILFQSTIRSVAVQAEMIRVKHMISQGATEQSPLVSGYNCTNLGSSRRILK 92
              +S+       ++ IRVKHMISQGATEQSPLVSGYN TNLGSS RIL+
Sbjct: 406 DGLRSSCVLYYSYSDYIRVKHMISQGATEQSPLVSGYNRTNLGSSGRILE 455

[Close]

BLAST of MELO3C019445 vs. NCBI nr
Match: XP_008456060.1 (PREDICTED: ATP-dependent DNA helicase Q-like 4A isoform X3 [Cucumis melo])

HSP 1 Score: 98.6 bits (244), Expect = 3.0e-17
Identity = 61/110 (55.45%), Postives = 68/110 (61.82%), Query Frame = 0


Query: 1   MDPAQRSFVQKQWSKDEINIISATVAFGMASTS-------------------QMFGLSFT 60
           MDPAQRSF+QKQWSKDEINII ATVAFGM                       Q  G +  
Sbjct: 678 MDPAQRSFIQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGR 737

Query: 61  ILFQSTIRSVAVQAEMIRVKHMISQGATEQSPLVSGYNCTNLGSSRRILK 92
              +S+       ++ IRVKHMISQGATEQSPLVSGYN TNLGSS RIL+
Sbjct: 738 DGLRSSCVLYYSYSDYIRVKHMISQGATEQSPLVSGYNRTNLGSSGRILE 787

[Close]

BLAST of MELO3C019445 vs. ExPASy Swiss-Prot
Match: Q8L840 (ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.5e-11
Identity = 47/110 (42.73%), Postives = 58/110 (52.73%), Query Frame = 0


Query: 1   MDPAQRSFVQKQWSKDEINIISATVAFGMASTSQMFGLSFTILFQSTI------------ 60
           M+P QR+F+Q QWSKDEINII ATVAFGM                 +I            
Sbjct: 707 MEPEQRAFIQTQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGR 766

Query: 61  ---RSVAV----QAEMIRVKHMISQGATEQSPLVSGYNCTNLGSSRRILK 92
              RS  V      + IRVKHMISQG  +QSP+ +GYN   + SS R+L+
Sbjct: 767 DGQRSSCVLYYGYGDYIRVKHMISQGGVDQSPMATGYN--RVASSGRLLE 814

[Close]

BLAST of MELO3C019445 vs. ExPASy Swiss-Prot
Match: Q9FT70 (ATP-dependent DNA helicase Q-like 4B OS=Arabidopsis thaliana OX=3702 GN=RECQL4B PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 9.9e-11
Identity = 48/110 (43.64%), Postives = 55/110 (50.00%), Query Frame = 0


Query: 1   MDPAQRSFVQKQWSKDEINIISATVAFGMASTSQMFGLSFTILFQSTI------------ 60
           MDP +R+FVQKQWSKDEINII ATVAFGM                 +I            
Sbjct: 723 MDPGKRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGR 782

Query: 61  ---RSVAV----QAEMIRVKHMISQGATEQSPLVSGYNCTNLGSSRRILK 92
              RS  V      + IRVKHMISQG   Q  +  GYNC    SS R+L+
Sbjct: 783 DGQRSSCVLYYSYTDYIRVKHMISQGGLGQGQMKMGYNCK--ASSGRMLE 830

[Close]

BLAST of MELO3C019445 vs. ExPASy TrEMBL
Match: A0A1S3C1Y0 (ATP-dependent DNA helicase Q-like 4A isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496107 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 4.6e-43
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MDPAQRSFVQKQWSKDEINIISATVAFGMASTSQMFGLSFTILFQSTIRSVAVQAEMIRV 60
          MDPAQRSFVQKQWSKDEINIISATVAFGMASTSQMFGLSFTILFQSTIRSVAVQAEMIRV
Sbjct: 1  MDPAQRSFVQKQWSKDEINIISATVAFGMASTSQMFGLSFTILFQSTIRSVAVQAEMIRV 60

Query: 61 KHMISQGATEQSPLVSGYNCTNLGSSRRILKDQH 95
          KHMISQGATEQSPLVSGYNCTNLGSSRRILKDQH
Sbjct: 61 KHMISQGATEQSPLVSGYNCTNLGSSRRILKDQH 94

[Close]

BLAST of MELO3C019445 vs. ExPASy TrEMBL
Match: A0A1S3C3L8 (ATP-dependent DNA helicase Q-like 4B isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496107 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.1e-23
Identity = 69/109 (63.30%), Postives = 73/109 (66.97%), Query Frame = 0


Query: 1   MDPAQRSFVQKQWSKDEINIISATVAFGMASTS---------------QMFGLSFTILFQ 60
           MDPAQRSFVQKQWSKDEINIISATVAFGM                   Q  G +      
Sbjct: 1   MDPAQRSFVQKQWSKDEINIISATVAFGMGINKPNVRFVIHHSLPKYHQECGRAGRDGMP 60

Query: 61  STIRSVAVQAEMIRVKHMISQGATEQSPLVSGYNCTNLGSSRRILKDQH 95
           S+       ++ IRVKHMISQGATEQSPLVSGYNCTNLGSSRRILKDQH
Sbjct: 61  SSRVLYYSYSDYIRVKHMISQGATEQSPLVSGYNCTNLGSSRRILKDQH 109

[Close]

BLAST of MELO3C019445 vs. ExPASy TrEMBL
Match: A0A1S3C1X6 (DNA helicase OS=Cucumis melo OX=3656 GN=LOC103496104 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.1e-19
Identity = 61/91 (67.03%), Postives = 68/91 (74.73%), Query Frame = 0


Query: 1   MDPAQRSFVQKQWSKDEINIISATVAFGMASTSQMFGLSFTILFQSTIRSVAVQAEMIRV 60
           MDPAQRSF+QKQWSKDEINII ATVAFGM        + F ++  S  +S+      IRV
Sbjct: 711 MDPAQRSFIQKQWSKDEINIICATVAFGMGINKP--DVRF-VIHHSLPKSIE-GYHQIRV 770

Query: 61  KHMISQGATEQSPLVSGYNCTNLGSSRRILK 92
           KHMISQGATEQSPLVSGYN TNLGSS RIL+
Sbjct: 771 KHMISQGATEQSPLVSGYNRTNLGSSGRILE 797

[Close]

BLAST of MELO3C019445 vs. ExPASy TrEMBL
Match: A0A5D3DFS4 (DNA helicase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold584G00040 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.5e-17
Identity = 61/110 (55.45%), Postives = 68/110 (61.82%), Query Frame = 0


Query: 1   MDPAQRSFVQKQWSKDEINIISATVAFGMASTS-------------------QMFGLSFT 60
           MDPAQRSF+QKQWSKDEINII ATVAFGM                       Q  G +  
Sbjct: 542 MDPAQRSFIQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGR 601

Query: 61  ILFQSTIRSVAVQAEMIRVKHMISQGATEQSPLVSGYNCTNLGSSRRILK 92
              +S+       ++ IRVKHMISQGATEQSPLVSGYN TNLGSS RIL+
Sbjct: 602 DGLRSSCVLYYSYSDYIRVKHMISQGATEQSPLVSGYNRTNLGSSGRILE 651

[Close]

BLAST of MELO3C019445 vs. ExPASy TrEMBL
Match: A0A0A0L762 (DNA helicase OS=Cucumis sativus OX=3659 GN=Csa_3G221760 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.5e-17
Identity = 61/110 (55.45%), Postives = 68/110 (61.82%), Query Frame = 0


Query: 1   MDPAQRSFVQKQWSKDEINIISATVAFGMASTS-------------------QMFGLSFT 60
           MDPAQRSF+QKQWSKDEINII ATVAFGM                       Q  G +  
Sbjct: 691 MDPAQRSFIQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGR 750

Query: 61  ILFQSTIRSVAVQAEMIRVKHMISQGATEQSPLVSGYNCTNLGSSRRILK 92
              +S+       ++ IRVKHMISQGATEQSPLVSGYN TNLGSS RIL+
Sbjct: 751 DGLRSSCVLYYSYSDYIRVKHMISQGATEQSPLVSGYNRTNLGSSGRILE 800

[Close]

BLAST of MELO3C019445 vs. TAIR 10
Match: AT1G10930.1 (DNA helicase (RECQl4A) )

HSP 1 Score: 70.1 bits (170), Expect = 1.1e-12
Identity = 47/110 (42.73%), Postives = 58/110 (52.73%), Query Frame = 0


Query: 1   MDPAQRSFVQKQWSKDEINIISATVAFGMASTSQMFGLSFTILFQSTI------------ 60
           M+P QR+F+Q QWSKDEINII ATVAFGM                 +I            
Sbjct: 707 MEPEQRAFIQTQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGR 766

Query: 61  ---RSVAV----QAEMIRVKHMISQGATEQSPLVSGYNCTNLGSSRRILK 92
              RS  V      + IRVKHMISQG  +QSP+ +GYN   + SS R+L+
Sbjct: 767 DGQRSSCVLYYGYGDYIRVKHMISQGGVDQSPMATGYN--RVASSGRLLE 814

[Close]

BLAST of MELO3C019445 vs. TAIR 10
Match: AT1G60930.1 (RECQ helicase L4B )

HSP 1 Score: 67.4 bits (163), Expect = 7.0e-12
Identity = 48/110 (43.64%), Postives = 55/110 (50.00%), Query Frame = 0


Query: 1   MDPAQRSFVQKQWSKDEINIISATVAFGMASTSQMFGLSFTILFQSTI------------ 60
           MDP +R+FVQKQWSKDEINII ATVAFGM                 +I            
Sbjct: 723 MDPGKRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGR 782

Query: 61  ---RSVAV----QAEMIRVKHMISQGATEQSPLVSGYNCTNLGSSRRILK 92
              RS  V      + IRVKHMISQG   Q  +  GYNC    SS R+L+
Sbjct: 783 DGQRSSCVLYYSYTDYIRVKHMISQGGLGQGQMKMGYNCK--ASSGRMLE 830

The following BLAST results are available for this feature:

BLAST of MELO3C019445 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008456064.1	9.4e-43	100.00	PREDICTED: ATP-dependent DNA helicase Q-like 4A isoform X2 [Cucumis melo]	[more]
XP_008456063.1	6.3e-23	63.30	PREDICTED: ATP-dependent DNA helicase Q-like 4B isoform X1 [Cucumis melo]	[more]
XP_008456059.1	4.3e-19	67.03	PREDICTED: ATP-dependent DNA helicase Q-like 4A isoform X2 [Cucumis melo]	[more]
XP_008456062.1	3.0e-17	55.45	PREDICTED: ATP-dependent DNA helicase Q-like 4A isoform X5 [Cucumis melo]	[more]
XP_008456060.1	3.0e-17	55.45	PREDICTED: ATP-dependent DNA helicase Q-like 4A isoform X3 [Cucumis melo]	[more]

BLAST of MELO3C019445 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L840	1.5e-11	42.73	ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A ...	[more]
Q9FT70	9.9e-11	43.64	ATP-dependent DNA helicase Q-like 4B OS=Arabidopsis thaliana OX=3702 GN=RECQL4B ...	[more]

BLAST of MELO3C019445 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C1Y0	4.6e-43	100.00	ATP-dependent DNA helicase Q-like 4A isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3C3L8	3.1e-23	63.30	ATP-dependent DNA helicase Q-like 4B isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3C1X6	2.1e-19	67.03	DNA helicase OS=Cucumis melo OX=3656 GN=LOC103496104 PE=3 SV=1	[more]
A0A5D3DFS4	1.5e-17	55.45	DNA helicase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold584G00040 P...	[more]
A0A0A0L762	1.5e-17	55.45	DNA helicase OS=Cucumis sativus OX=3659 GN=Csa_3G221760 PE=3 SV=1	[more]

BLAST of MELO3C019445 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G10930.1	1.1e-12	42.73	DNA helicase (RECQl4A)	[more]
AT1G60930.1	7.0e-12	43.64	RECQ helicase L4B	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR13710	DNA HELICASE RECQ FAMILY MEMBER	coord: 1..30
None	No IPR available	PANTHER	PTHR13710:SF132	ATP-DEPENDENT DNA HELICASE Q-LIKE 4B	coord: 1..30

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019445.1	MELO3C019445.1	mRNA