MELO3C019443 (gene) Melon (DHL92) v4

Overview


Name	MELO3C019443
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Serine hydroxymethyltransferase
Location	chr06: 9913890 .. 9915235 (-)
RNA-Seq Expression	MELO3C019443
Synteny	MELO3C019443

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGACACGAAGGAGATTTGTACGCTCGTGGGGTAATCAGACCCTTCGATCTGTGGATCCTAGGTTGTATGGGATTATAAAGAAAGAGAAACAATTCCAAATCAATGGCATTGAATTGTTTGCTTCTGAAAATTATGTGCGTCGAGCTGTAATGGAAGCACTTGGAAGCCACTTGACTAATAAGTACTCAAAAGGTATTCCTGGTGCGAGGTACTACGGTGGAAATCAATATATAGGTGAGATTGAAATCCTTTGTCATGAGCGCGCATTTTGGCAGCATTTGATCTTAATCCTCACACGTGGGGAGTTAACGTTCAACCTTATTCATGCACATCTGCAAATTTTTCCGTCTAAACTGGTTATATAGATTATGATAAGCTTGAGGAGAGGGCGCTTGCCTTTTGCCCTAAACTACTTATCTGTGGAGGGAGCGCGTATCCTCGTGAATTGGATTATGCAAGGTTTAGGCAGAATGCAGATAAGTTTGGAGCAGTTCTGATGTGTGATATGGCTCAAATTAGTGGCCTTGTTGCTGCTAAGGTGTGAATTTTTCGTCATCTTTAGCGATGTACTATCCCTTTAATGTCTGTGTAAAAAAAAAAATTGGTTCGGGTCCACAAAGTTCTTGGTTTTCTTATCATATGTTCTAGTTACTATGACGTTCTCATTCTCTTGGGTTGCAATTTAGCTGGTTGTTAATATATTCATAATAATTGAATTGTTCTACCTGACACTTAGAAAAGGCTTCAAATGTGGTTGTGTGGAAATTTATTGTAGTTTTTAGCATTTAGGTTATGAATGGCTATGAAACTTAGTGATAGGAAAATGTAACTTATCGAGAGATTATGGTAGAGACTGATTTTAGGACTTAACCCTAGTTTACAAGTGCGTTGGGCCAAGATGTCAACCCATGGATATTTTTTTTTTGGACCAAAACGATTTGGTATTTATTCTTTCATGGTGGATATGTATTTATCAGAAAAACTGAAAGCTTGACCAACATCTATTATTTTTCTCAGCAGTAGGATGTTATTTTTTCTCTTCCTTTTCTACTTGGTTCTAATATACAGTTTTGTTCAACTGTGTGCTTATGTAGTTCTCAGTATTATTTGTTTACATGTGTAATTGTTTCTTCACTTACATTGTTTGGTCCAGTTCATCACTACTTCATACATGTGATCTTGTAATTTTGAATGAAGAATTGTCTCCATTCTGTTTATACTTTGATTGTGGTTTAAAATTTTGTTACAGGAATGTGCGAGTCTTTTTGAGTACTGTGATGTTGTGACTTCAACTACTCATAAGAGCCTTCGAAGTCCAAGGCGAGGTATAATTTTTTTATAA

mRNA sequence

ATGGAGACACGAAGGAGATTTGTACGCTCGTGGGGTAATCAGACCCTTCGATCTGTGGATCCTAGGTTGTATGGGATTATAAAGAAAGAGAAACAATTCCAAATCAATGGCATTGAATTGTTTGCTTCTGAAAATTATGTGCGTCGAGCTGTAATGGAAGCACTTGGAAGCCACTTGACTAATAAGTACTCAAAAGGTATTCCTGGTGCGAGGTACTACGGTGGAAATCAATATATAGATTATGATAAGCTTGAGGAGAGGGCGCTTGCCTTTTGCCCTAAACTACTTATCTGTGGAGGGAGCGCGTATCCTCGTGAATTGGATTATGCAAGGTTTAGGCAGAATGCAGATAAGTTTGGAGCAGTTCTGATGTGTGATATGGCTCAAATTAGTGGCCTTGTTGCTGCTAAGGAATGTGCGAGTCTTTTTGAGTACTGTGATGTTGTGACTTCAACTACTCATAAGAGCCTTCGAAGTCCAAGGCGAGGTATAATTTTTTTATAA

Coding sequence (CDS)

ATGGAGACACGAAGGAGATTTGTACGCTCGTGGGGTAATCAGACCCTTCGATCTGTGGATCCTAGGTTGTATGGGATTATAAAGAAAGAGAAACAATTCCAAATCAATGGCATTGAATTGTTTGCTTCTGAAAATTATGTGCGTCGAGCTGTAATGGAAGCACTTGGAAGCCACTTGACTAATAAGTACTCAAAAGGTATTCCTGGTGCGAGGTACTACGGTGGAAATCAATATATAGATTATGATAAGCTTGAGGAGAGGGCGCTTGCCTTTTGCCCTAAACTACTTATCTGTGGAGGGAGCGCGTATCCTCGTGAATTGGATTATGCAAGGTTTAGGCAGAATGCAGATAAGTTTGGAGCAGTTCTGATGTGTGATATGGCTCAAATTAGTGGCCTTGTTGCTGCTAAGGAATGTGCGAGTCTTTTTGAGTACTGTGATGTTGTGACTTCAACTACTCATAAGAGCCTTCGAAGTCCAAGGCGAGGTATAATTTTTTTATAA

Protein sequence

METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLTNKYSKGIPGARYYGGNQYIDYDKLEERALAFCPKLLICGGSAYPRELDYARFRQNADKFGAVLMCDMAQISGLVAAKECASLFEYCDVVTSTTHKSLRSPRRGIIFL

Homology

[Close]

BLAST of MELO3C019443 vs. NCBI nr
Match: KAA0038974.1 (serine hydroxymethyltransferase 6-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 336.3 bits (861), Expect = 1.5e-88
Identity = 162/163 (99.39%), Postives = 162/163 (99.39%), Query Frame = 0


Query: 1   METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT 60
           METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT
Sbjct: 1   METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT 60

Query: 61  NKYSKGIPGARYYGGNQYIDYDKLEERALAFCPKLLICGGSAYPRELDYARFRQNADKFG 120
           NKYSKGIPGARYYGGNQYIDYDKLEERALAFCPKLLICGGS YPRELDYARFRQNADKFG
Sbjct: 61  NKYSKGIPGARYYGGNQYIDYDKLEERALAFCPKLLICGGSTYPRELDYARFRQNADKFG 120

Query: 121 AVLMCDMAQISGLVAAKECASLFEYCDVVTSTTHKSLRSPRRG 164
           AVLMCDMAQISGLVAAKECASLFEYCDVVTSTTHKSLRSPRRG
Sbjct: 121 AVLMCDMAQISGLVAAKECASLFEYCDVVTSTTHKSLRSPRRG 163

[Close]

BLAST of MELO3C019443 vs. NCBI nr
Match: TYK11173.1 (serine hydroxymethyltransferase 6-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 332.8 bits (852), Expect = 1.7e-87
Identity = 161/163 (98.77%), Postives = 161/163 (98.77%), Query Frame = 0


Query: 1   METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT 60
           METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT
Sbjct: 1   METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT 60

Query: 61  NKYSKGIPGARYYGGNQYIDYDKLEERALAFCPKLLICGGSAYPRELDYARFRQNADKFG 120
           NKYSKGIPGARYYGGNQYIDYDKLEERALAFCPKLLICGGSAYPRELDYARFRQ ADKFG
Sbjct: 61  NKYSKGIPGARYYGGNQYIDYDKLEERALAFCPKLLICGGSAYPRELDYARFRQIADKFG 120

Query: 121 AVLMCDMAQISGLVAAKECASLFEYCDVVTSTTHKSLRSPRRG 164
           AVLMCDMAQISGLVAAKECASLFEYCDVVTSTTHKSLR PRRG
Sbjct: 121 AVLMCDMAQISGLVAAKECASLFEYCDVVTSTTHKSLRGPRRG 163

[Close]

BLAST of MELO3C019443 vs. NCBI nr
Match: KAA0038985.1 (serine hydroxymethyltransferase 7-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 260.8 bits (665), Expect = 8.2e-66
Identity = 126/138 (91.30%), Postives = 131/138 (94.93%), Query Frame = 0


Query: 1   METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT 60
           METRR  +RSWGNQTLRSVDP+LYGII+KEKQ QINGIELFASENYVRRAVMEALGSHLT
Sbjct: 1   METRRSSIRSWGNQTLRSVDPKLYGIIEKEKQGQINGIELFASENYVRRAVMEALGSHLT 60

Query: 61  NKYSKGIPGARYYGGNQYIDYDKLEERALAFCPKLLICGGSAYPRELDYARFRQNADKFG 120
           NKYS GIPGARYYGGNQYIDY+KLEERALAFCPKLLICGGS YPRELDYARFRQ ADK G
Sbjct: 61  NKYSNGIPGARYYGGNQYIDYEKLEERALAFCPKLLICGGSVYPRELDYARFRQIADKCG 120

Query: 121 AVLMCDMAQISGLVAAKE 139
           AVLMCDMAQISGLVAAK+
Sbjct: 121 AVLMCDMAQISGLVAAKK 138

[Close]

BLAST of MELO3C019443 vs. NCBI nr
Match: XP_016901913.1 (PREDICTED: serine hydroxymethyltransferase 6-like isoform X2 [Cucumis melo])

HSP 1 Score: 259.6 bits (662), Expect = 1.8e-65
Identity = 147/259 (56.76%), Postives = 153/259 (59.07%), Query Frame = 0


Query: 1   METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT 60
           METRR  VRSWGNQTLR+ DP+LYGI++KEKQ QINGIEL ASENYV RAVMEALGSHLT
Sbjct: 113 METRRSSVRSWGNQTLRAADPKLYGIMEKEKQRQINGIELIASENYVCRAVMEALGSHLT 172

Query: 61  NKYSKGIPGARYYGGNQ------------------------------------------- 120
           NKYS+G+PGARYYGGNQ                                           
Sbjct: 173 NKYSEGMPGARYYGGNQYIDEIEILCRERALAAFDLNPHSWGVNVQPYSCTSANFAVYTG 232

Query: 121 --------------------------------------------------YIDYDKLEER 167
                                                             YIDYDKLEER
Sbjct: 233 LLLPGDRIMALDSPSGGNPSHGYCTRNGKKVAGASIFFESFPYKVNPQTGYIDYDKLEER 292

[Close]

BLAST of MELO3C019443 vs. NCBI nr
Match: XP_008456065.1 (PREDICTED: serine hydroxymethyltransferase 7-like isoform X1 [Cucumis melo])

HSP 1 Score: 259.6 bits (662), Expect = 1.8e-65
Identity = 147/259 (56.76%), Postives = 153/259 (59.07%), Query Frame = 0


Query: 1   METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT 60
           METRR  VRSWGNQTLR+ DP+LYGI++KEKQ QINGIEL ASENYV RAVMEALGSHLT
Sbjct: 113 METRRSSVRSWGNQTLRAADPKLYGIMEKEKQRQINGIELIASENYVCRAVMEALGSHLT 172

Query: 61  NKYSKGIPGARYYGGNQ------------------------------------------- 120
           NKYS+G+PGARYYGGNQ                                           
Sbjct: 173 NKYSEGMPGARYYGGNQYIDEIEILCRERALAAFDLNPHSWGVNVQPYSCTSANFAVYTG 232

Query: 121 --------------------------------------------------YIDYDKLEER 167
                                                             YIDYDKLEER
Sbjct: 233 LLLPGDRIMALDSPSGGNPSHGYCTRNGKKVAGASIFFESFPYKVNPQTGYIDYDKLEER 292

[Close]

BLAST of MELO3C019443 vs. ExPASy Swiss-Prot
Match: Q84WV0 (Serine hydroxymethyltransferase 7 OS=Arabidopsis thaliana OX=3702 GN=SHM7 PE=2 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 6.4e-53
Identity = 115/259 (44.40%), Postives = 141/259 (54.44%), Query Frame = 0


Query: 1   METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT 60
           +E+RR  VR+WG+Q +   DP ++ +++KEKQ Q+ GIEL ASEN+V RAVMEALGSHLT
Sbjct: 123 LESRRAAVRAWGDQPIHLADPDIHELMEKEKQRQVRGIELIASENFVCRAVMEALGSHLT 182

Query: 61  NKYSKGIPGARYYGGNQ------------------------------------------- 120
           NKYS+G+PGARYY GNQ                                           
Sbjct: 183 NKYSEGMPGARYYTGNQYIDQIENLCIERALTAFGLESDKWGVNVQPYSCTSANFAVYTG 242

Query: 121 --------------------------------------------------YIDYDKLEER 167
                                                             YIDYDKLE++
Sbjct: 243 LLLPGERIMGLDSPSGGHMSHGYCTPGGKKISAASIFFESFPYKVNPQTGYIDYDKLEDK 302

[Close]

BLAST of MELO3C019443 vs. ExPASy Swiss-Prot
Match: Q9LM59 (Serine hydroxymethyltransferase 6 OS=Arabidopsis thaliana OX=3702 GN=SHM6 PE=2 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.4e-52
Identity = 117/259 (45.17%), Postives = 139/259 (53.67%), Query Frame = 0


Query: 1   METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT 60
           +E+RR  VR+WGNQ++   DP ++  ++KEKQ Q  GIEL ASEN+V RAVMEALGSHLT
Sbjct: 127 IESRRAVVRAWGNQSIEEADPEIHEFMEKEKQRQFRGIELIASENFVCRAVMEALGSHLT 186

Query: 61  NKYSKGIPGARYYGGNQ------------------------------------------- 120
           NKYS+G+PGARYY GNQ                                           
Sbjct: 187 NKYSEGMPGARYYTGNQYIDQIEILCQERALAAFGLNHEKWGVNVQPYSCTSANFAVFTG 246

Query: 121 --------------------------------------------------YIDYDKLEER 167
                                                             YIDYDKLEE+
Sbjct: 247 LLMPGERIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESFPYKVDPRTGYIDYDKLEEK 306

[Close]

BLAST of MELO3C019443 vs. ExPASy Swiss-Prot
Match: O23254 (Serine hydroxymethyltransferase 4 OS=Arabidopsis thaliana OX=3702 GN=SHM4 PE=1 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 7.8e-51
Identity = 116/252 (46.03%), Postives = 134/252 (53.17%), Query Frame = 0


Query: 8   VRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLTNKYSKGI 67
           V SWGN +L SVDP ++ +I+KEK+ Q  GIEL ASEN+   AV+EALGS LTNKYS+GI
Sbjct: 4   VSSWGNTSLVSVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGI 63

Query: 68  PGARYYGGNQ-------------------------------------------------- 127
           PG RYYGGN+                                                  
Sbjct: 64  PGNRYYGGNEFIDEIENLCRSRALEAFHCDPAAWGVNVQPYSGSPANFAAYTALLQPHDR 123

Query: 128 -------------------------------------------YIDYDKLEERALAFCPK 167
                                                      YIDYDKLEE+AL F PK
Sbjct: 124 IMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNFTTGYIDYDKLEEKALDFRPK 183

[Close]

BLAST of MELO3C019443 vs. ExPASy Swiss-Prot
Match: Q9SVM4 (Serine hydroxymethyltransferase 5 OS=Arabidopsis thaliana OX=3702 GN=SHM5 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 4.4e-46
Identity = 108/252 (42.86%), Postives = 126/252 (50.00%), Query Frame = 0


Query: 8   VRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLTNKYSKGI 67
           V SWGN  L  VDP +Y +I+KEK  Q  GIEL A+EN+   AVMEALGS LTNKYS+G+
Sbjct: 4   VYSWGNTHLDFVDPEIYDLIEKEKHRQCRGIELIAAENFTSVAVMEALGSCLTNKYSEGM 63

Query: 68  PGARYYGGNQ-------------------------------------------------- 127
           PG RYYGG +                                                  
Sbjct: 64  PGNRYYGGTEFIDEIESLCRSRSLEAFHCNPEKWGVNVQPYSGSPANFAAYTALLQPHDR 123

Query: 128 -------------------------------------------YIDYDKLEERALAFCPK 167
                                                      YIDYDKLEE+A+ F PK
Sbjct: 124 IMGLDLPSGGHITHGYYSSGGKNISATSIYFENLPYKVDSKTGYIDYDKLEEKAMDFRPK 183

[Close]

BLAST of MELO3C019443 vs. ExPASy Swiss-Prot
Match: Q54Z26 (Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum OX=44689 GN=shmt1 PE=1 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.2e-40
Identity = 99/246 (40.24%), Postives = 116/246 (47.15%), Query Frame = 0


Query: 12  GNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLTNKYSKGIPGAR 71
           GN  L+ VD  ++ ++ +EK  Q  G+EL ASEN+  RAVMEALGSH TNKY++G PG+R
Sbjct: 6   GNTPLKEVDNEIFELMNREKDRQFKGLELIASENFTSRAVMEALGSHFTNKYAEGYPGSR 65

Query: 72  YYGGNQ------------------------------------------------------ 131
           YYGG +                                                      
Sbjct: 66  YYGGTEVVDELETLCQKRALKAFRLDESKWGVNVQPYSGSPANFAVYTALLRPHDRIMGL 125

Query: 132 -------------------------------------YIDYDKLEERALAFCPKLLICGG 167
                                                 IDY +LEE AL F PKL+I G 
Sbjct: 126 DLPSGGHLTHGYQTDKKKISASSIFFESMPYQIGADGLIDYQRLEENALLFKPKLIISGA 185

[Close]

BLAST of MELO3C019443 vs. ExPASy TrEMBL
Match: A0A5A7T654 (Glycine hydroxymethyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00540 PE=4 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 7.5e-89
Identity = 162/163 (99.39%), Postives = 162/163 (99.39%), Query Frame = 0


Query: 1   METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT 60
           METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT
Sbjct: 1   METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT 60

Query: 61  NKYSKGIPGARYYGGNQYIDYDKLEERALAFCPKLLICGGSAYPRELDYARFRQNADKFG 120
           NKYSKGIPGARYYGGNQYIDYDKLEERALAFCPKLLICGGS YPRELDYARFRQNADKFG
Sbjct: 61  NKYSKGIPGARYYGGNQYIDYDKLEERALAFCPKLLICGGSTYPRELDYARFRQNADKFG 120

Query: 121 AVLMCDMAQISGLVAAKECASLFEYCDVVTSTTHKSLRSPRRG 164
           AVLMCDMAQISGLVAAKECASLFEYCDVVTSTTHKSLRSPRRG
Sbjct: 121 AVLMCDMAQISGLVAAKECASLFEYCDVVTSTTHKSLRSPRRG 163

[Close]

BLAST of MELO3C019443 vs. ExPASy TrEMBL
Match: A0A5D3CH07 (Glycine hydroxymethyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00060 PE=3 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 8.3e-88
Identity = 161/163 (98.77%), Postives = 161/163 (98.77%), Query Frame = 0


Query: 1   METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT 60
           METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT
Sbjct: 1   METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT 60

Query: 61  NKYSKGIPGARYYGGNQYIDYDKLEERALAFCPKLLICGGSAYPRELDYARFRQNADKFG 120
           NKYSKGIPGARYYGGNQYIDYDKLEERALAFCPKLLICGGSAYPRELDYARFRQ ADKFG
Sbjct: 61  NKYSKGIPGARYYGGNQYIDYDKLEERALAFCPKLLICGGSAYPRELDYARFRQIADKFG 120

Query: 121 AVLMCDMAQISGLVAAKECASLFEYCDVVTSTTHKSLRSPRRG 164
           AVLMCDMAQISGLVAAKECASLFEYCDVVTSTTHKSLR PRRG
Sbjct: 121 AVLMCDMAQISGLVAAKECASLFEYCDVVTSTTHKSLRGPRRG 163

[Close]

BLAST of MELO3C019443 vs. ExPASy TrEMBL
Match: A0A5A7TC66 (Glycine hydroxymethyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00660 PE=3 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 4.0e-66
Identity = 126/138 (91.30%), Postives = 131/138 (94.93%), Query Frame = 0


Query: 1   METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT 60
           METRR  +RSWGNQTLRSVDP+LYGII+KEKQ QINGIELFASENYVRRAVMEALGSHLT
Sbjct: 1   METRRSSIRSWGNQTLRSVDPKLYGIIEKEKQGQINGIELFASENYVRRAVMEALGSHLT 60

Query: 61  NKYSKGIPGARYYGGNQYIDYDKLEERALAFCPKLLICGGSAYPRELDYARFRQNADKFG 120
           NKYS GIPGARYYGGNQYIDY+KLEERALAFCPKLLICGGS YPRELDYARFRQ ADK G
Sbjct: 61  NKYSNGIPGARYYGGNQYIDYEKLEERALAFCPKLLICGGSVYPRELDYARFRQIADKCG 120

Query: 121 AVLMCDMAQISGLVAAKE 139
           AVLMCDMAQISGLVAAK+
Sbjct: 121 AVLMCDMAQISGLVAAKK 138

[Close]

BLAST of MELO3C019443 vs. ExPASy TrEMBL
Match: A0A1S3C2G6 (Serine hydroxymethyltransferase OS=Cucumis melo OX=3656 GN=LOC103496109 PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 8.9e-66
Identity = 147/259 (56.76%), Postives = 153/259 (59.07%), Query Frame = 0


Query: 1   METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT 60
           METRR  VRSWGNQTLR+ DP+LYGI++KEKQ QINGIEL ASENYV RAVMEALGSHLT
Sbjct: 113 METRRSSVRSWGNQTLRAADPKLYGIMEKEKQRQINGIELIASENYVCRAVMEALGSHLT 172

Query: 61  NKYSKGIPGARYYGGNQ------------------------------------------- 120
           NKYS+G+PGARYYGGNQ                                           
Sbjct: 173 NKYSEGMPGARYYGGNQYIDEIEILCRERALAAFDLNPHSWGVNVQPYSCTSANFAVYTG 232

Query: 121 --------------------------------------------------YIDYDKLEER 167
                                                             YIDYDKLEER
Sbjct: 233 LLLPGDRIMALDSPSGGNPSHGYCTRNGKKVAGASIFFESFPYKVNPQTGYIDYDKLEER 292

[Close]

BLAST of MELO3C019443 vs. ExPASy TrEMBL
Match: A0A1S4E114 (Serine hydroxymethyltransferase OS=Cucumis melo OX=3656 GN=LOC103496109 PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 8.9e-66
Identity = 147/259 (56.76%), Postives = 153/259 (59.07%), Query Frame = 0


Query: 1   METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT 60
           METRR  VRSWGNQTLR+ DP+LYGI++KEKQ QINGIEL ASENYV RAVMEALGSHLT
Sbjct: 113 METRRSSVRSWGNQTLRAADPKLYGIMEKEKQRQINGIELIASENYVCRAVMEALGSHLT 172

Query: 61  NKYSKGIPGARYYGGNQ------------------------------------------- 120
           NKYS+G+PGARYYGGNQ                                           
Sbjct: 173 NKYSEGMPGARYYGGNQYIDEIEILCRERALAAFDLNPHSWGVNVQPYSCTSANFAVYTG 232

Query: 121 --------------------------------------------------YIDYDKLEER 167
                                                             YIDYDKLEER
Sbjct: 233 LLLPGDRIMALDSPSGGNPSHGYCTRNGKKVAGASIFFESFPYKVNPQTGYIDYDKLEER 292

[Close]

BLAST of MELO3C019443 vs. TAIR 10
Match: AT1G36370.1 (serine hydroxymethyltransferase 7 )

HSP 1 Score: 208.4 bits (529), Expect = 4.5e-54
Identity = 115/259 (44.40%), Postives = 141/259 (54.44%), Query Frame = 0


Query: 1   METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT 60
           +E+RR  VR+WG+Q +   DP ++ +++KEKQ Q+ GIEL ASEN+V RAVMEALGSHLT
Sbjct: 123 LESRRAAVRAWGDQPIHLADPDIHELMEKEKQRQVRGIELIASENFVCRAVMEALGSHLT 182

Query: 61  NKYSKGIPGARYYGGNQ------------------------------------------- 120
           NKYS+G+PGARYY GNQ                                           
Sbjct: 183 NKYSEGMPGARYYTGNQYIDQIENLCIERALTAFGLESDKWGVNVQPYSCTSANFAVYTG 242

Query: 121 --------------------------------------------------YIDYDKLEER 167
                                                             YIDYDKLE++
Sbjct: 243 LLLPGERIMGLDSPSGGHMSHGYCTPGGKKISAASIFFESFPYKVNPQTGYIDYDKLEDK 302

[Close]

BLAST of MELO3C019443 vs. TAIR 10
Match: AT1G22020.1 (serine hydroxymethyltransferase 6 )

HSP 1 Score: 207.2 bits (526), Expect = 1.0e-53
Identity = 117/259 (45.17%), Postives = 139/259 (53.67%), Query Frame = 0


Query: 1   METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT 60
           +E+RR  VR+WGNQ++   DP ++  ++KEKQ Q  GIEL ASEN+V RAVMEALGSHLT
Sbjct: 127 IESRRAVVRAWGNQSIEEADPEIHEFMEKEKQRQFRGIELIASENFVCRAVMEALGSHLT 186

Query: 61  NKYSKGIPGARYYGGNQ------------------------------------------- 120
           NKYS+G+PGARYY GNQ                                           
Sbjct: 187 NKYSEGMPGARYYTGNQYIDQIEILCQERALAAFGLNHEKWGVNVQPYSCTSANFAVFTG 246

Query: 121 --------------------------------------------------YIDYDKLEER 167
                                                             YIDYDKLEE+
Sbjct: 247 LLMPGERIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESFPYKVDPRTGYIDYDKLEEK 306

[Close]

BLAST of MELO3C019443 vs. TAIR 10
Match: AT4G13930.1 (serine hydroxymethyltransferase 4 )

HSP 1 Score: 201.4 bits (511), Expect = 5.5e-52
Identity = 116/252 (46.03%), Postives = 134/252 (53.17%), Query Frame = 0


Query: 8   VRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLTNKYSKGI 67
           V SWGN +L SVDP ++ +I+KEK+ Q  GIEL ASEN+   AV+EALGS LTNKYS+GI
Sbjct: 4   VSSWGNTSLVSVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGI 63

Query: 68  PGARYYGGNQ-------------------------------------------------- 127
           PG RYYGGN+                                                  
Sbjct: 64  PGNRYYGGNEFIDEIENLCRSRALEAFHCDPAAWGVNVQPYSGSPANFAAYTALLQPHDR 123

Query: 128 -------------------------------------------YIDYDKLEERALAFCPK 167
                                                      YIDYDKLEE+AL F PK
Sbjct: 124 IMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNFTTGYIDYDKLEEKALDFRPK 183

[Close]

BLAST of MELO3C019443 vs. TAIR 10
Match: AT4G13890.1 (Pyridoxal phosphate (PLP)-dependent transferases superfamily protein )

HSP 1 Score: 185.7 bits (470), Expect = 3.1e-47
Identity = 108/252 (42.86%), Postives = 126/252 (50.00%), Query Frame = 0


Query: 8   VRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLTNKYSKGI 67
           V SWGN  L  VDP +Y +I+KEK  Q  GIEL A+EN+   AVMEALGS LTNKYS+G+
Sbjct: 4   VYSWGNTHLDFVDPEIYDLIEKEKHRQCRGIELIAAENFTSVAVMEALGSCLTNKYSEGM 63

Query: 68  PGARYYGGNQ-------------------------------------------------- 127
           PG RYYGG +                                                  
Sbjct: 64  PGNRYYGGTEFIDEIESLCRSRSLEAFHCNPEKWGVNVQPYSGSPANFAAYTALLQPHDR 123

Query: 128 -------------------------------------------YIDYDKLEERALAFCPK 167
                                                      YIDYDKLEE+A+ F PK
Sbjct: 124 IMGLDLPSGGHITHGYYSSGGKNISATSIYFENLPYKVDSKTGYIDYDKLEEKAMDFRPK 183

[Close]

BLAST of MELO3C019443 vs. TAIR 10
Match: AT4G32520.1 (serine hydroxymethyltransferase 3 )

HSP 1 Score: 157.1 bits (396), Expect = 1.2e-38
Identity = 97/243 (39.92%), Postives = 111/243 (45.68%), Query Frame = 0


Query: 16  LRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLTNKYSKGIPGARYYGG 75
           L  VDP +  II KEK  Q   +EL ASEN+  RAVMEA+GS LTNKYS+G+PG RYYGG
Sbjct: 83  LGEVDPEVRTIITKEKDRQFRSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142

Query: 76  NQYI-------------------------------------------------------- 135
           N+YI                                                        
Sbjct: 143 NEYIDQLETLCQNRALAAFRLDSTKWGVNVQPLSGSPANFAVYTAILSPHDRIMGLDLPH 202

Query: 136 ------------------------------------DYDKLEERALAFCPKLLICGGSAY 167
                                               DYD LE+ A  F PKL+I G SAY
Sbjct: 203 GGHLSHGFMTAKRRVSGTSIYFESMPYRLDESTGIVDYDMLEKTATLFRPKLIIAGASAY 262

The following BLAST results are available for this feature:

BLAST of MELO3C019443 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038974.1	1.5e-88	99.39	serine hydroxymethyltransferase 6-like isoform X2 [Cucumis melo var. makuwa]	[more]
TYK11173.1	1.7e-87	98.77	serine hydroxymethyltransferase 6-like isoform X2 [Cucumis melo var. makuwa]	[more]
KAA0038985.1	8.2e-66	91.30	serine hydroxymethyltransferase 7-like isoform X1 [Cucumis melo var. makuwa]	[more]
XP_016901913.1	1.8e-65	56.76	PREDICTED: serine hydroxymethyltransferase 6-like isoform X2 [Cucumis melo]	[more]
XP_008456065.1	1.8e-65	56.76	PREDICTED: serine hydroxymethyltransferase 7-like isoform X1 [Cucumis melo]	[more]

BLAST of MELO3C019443 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84WV0	6.4e-53	44.40	Serine hydroxymethyltransferase 7 OS=Arabidopsis thaliana OX=3702 GN=SHM7 PE=2 S...	[more]
Q9LM59	1.4e-52	45.17	Serine hydroxymethyltransferase 6 OS=Arabidopsis thaliana OX=3702 GN=SHM6 PE=2 S...	[more]
O23254	7.8e-51	46.03	Serine hydroxymethyltransferase 4 OS=Arabidopsis thaliana OX=3702 GN=SHM4 PE=1 S...	[more]
Q9SVM4	4.4e-46	42.86	Serine hydroxymethyltransferase 5 OS=Arabidopsis thaliana OX=3702 GN=SHM5 PE=3 S...	[more]
Q54Z26	1.2e-40	40.24	Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum OX=44689 GN=shmt1 ...	[more]

BLAST of MELO3C019443 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T654	7.5e-89	99.39	Glycine hydroxymethyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A5D3CH07	8.3e-88	98.77	Glycine hydroxymethyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5A7TC66	4.0e-66	91.30	Glycine hydroxymethyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A1S3C2G6	8.9e-66	56.76	Serine hydroxymethyltransferase OS=Cucumis melo OX=3656 GN=LOC103496109 PE=3 SV=...	[more]
A0A1S4E114	8.9e-66	56.76	Serine hydroxymethyltransferase OS=Cucumis melo OX=3656 GN=LOC103496109 PE=3 SV=...	[more]

BLAST of MELO3C019443 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G36370.1	4.5e-54	44.40	serine hydroxymethyltransferase 7	[more]
AT1G22020.1	1.0e-53	45.17	serine hydroxymethyltransferase 6	[more]
AT4G13930.1	5.5e-52	46.03	serine hydroxymethyltransferase 4	[more]
AT4G13890.1	3.1e-47	42.86	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein	[more]
AT4G32520.1	1.2e-38	39.92	serine hydroxymethyltransferase 3	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039429	Serine hydroxymethyltransferase-like domain	PFAM	PF00464	SHMT	coord: 77..166 e-value: 6.0E-36 score: 123.9
IPR015421	Pyridoxal phosphate-dependent transferase, major domain	GENE3D	3.40.640.10		coord: 45..78 e-value: 3.7E-12 score: 47.9
IPR015421	Pyridoxal phosphate-dependent transferase, major domain	GENE3D	3.40.640.10		coord: 79..167 e-value: 3.9E-39 score: 136.2
None	No IPR available	PANTHER	PTHR11680:SF7	SERINE HYDROXYMETHYLTRANSFERASE 7	coord: 3..80
None	No IPR available	PANTHER	PTHR11680:SF7	SERINE HYDROXYMETHYLTRANSFERASE 7	coord: 78..166
IPR001085	Serine hydroxymethyltransferase	PANTHER	PTHR11680	SERINE HYDROXYMETHYLTRANSFERASE	coord: 3..80
IPR001085	Serine hydroxymethyltransferase	PANTHER	PTHR11680	SERINE HYDROXYMETHYLTRANSFERASE	coord: 78..166
IPR019798	Serine hydroxymethyltransferase, pyridoxal phosphate binding site	PROSITE	PS00096	SHMT	coord: 147..163
IPR015424	Pyridoxal phosphate-dependent transferase	SUPERFAMILY	53383	PLP-dependent transferases	coord: 6..166

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019443.1	MELO3C019443.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019264	glycine biosynthetic process from serine
biological_process	GO:0035999	tetrahydrofolate interconversion
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0004372	glycine hydroxymethyltransferase activity
molecular_function	GO:0030170	pyridoxal phosphate binding