MELO3C019338 (gene) Melon (DHL92) v4

Overview
NameMELO3C019338
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionProtein Ycf2-like
Locationchr07: 16307820 .. 16308180 (+)
RNA-Seq ExpressionMELO3C019338
SyntenyMELO3C019338
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCGTAAAAGCGAAAGATGTCTAGGATCAAGGTTGAAAAATATTAAAGCAAACAAGGATAATCCAATTGTGATCGGGGATAATACAGAGGTATATTTCTTACTTTCTGAATTTGTATTTTAAATGGTATTAATAGTTAAAAAATATATAATATGTATATATGGTAGAAGGAAGTAAGATATTAAGAACCAATCCAATATGAACCACTGCAAACTATATATCCAGAAGATGATGAACAAGAGTTAAGAGGACCTACAGGTACACAGATTGTGGTGTACCAGGATCAGAAGTTTGTGAAACCGGATGTTGTCTTTGAAACACCGGAAGCAAAACTGCAACACACGACAAAGGAAAACAG

mRNA sequence

ATGGTTCGTAAAAGCGAAAGATGTCTAGGATCAAGGTTGAAAAATATTAAAGCAAACAAGGATAATCCAATTGTGATCGGGGATAATACAGAGAAGGAAGTAAGATATTAAGAACCAATCCAATATGAACCACTGCAAACTATATATCCAGAAGATGATGAACAAGAGTTAAGAGGACCTACAGGTACACAGATTGTGGTGTACCAGGATCAGAAGTTTGTGAAACCGGATGTTGTCTTTGAAACACCGGAAGCAAAACTGCAACACACGACAAAGGAAAACAG

Coding sequence (CDS)

ATGGTTCGTAAAAGCGAAAGATGTCTAGGATCAAGGTTGAAAAATATTAAAGCAAACAAGGATAATCCAATTGTGATCGGGGATAATACAGAGAAGGAAGTAAGATATTAA

Protein sequence

MVRKSERCLGSRLKNIKANKDNPIVIGDNTEKEVRY
Homology
[Close]
BLAST of MELO3C019338 vs. NCBI nr
Match: KAA0043162.1 (uncharacterized protein E6C27_scaffold110G00260 [Cucumis melo var. makuwa] >TYK12303.1 uncharacterized protein E5676_scaffold302G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 59.7 bits (143), Expect = 6.0e-06
Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 1  MVRKSERCLGSRLKNIKANKDNPIVIGDNTEKEVRY 37
          MVR+SERCLG +LK IK+NKD+PIVI DNTE+EVRY
Sbjct: 1  MVRRSERCLGLQLKIIKSNKDDPIVIKDNTEEEVRY 36

[Close]
BLAST of MELO3C019338 vs. NCBI nr
Match: TYK30586.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 53.9 bits (128), Expect = 3.3e-04
Identity = 24/35 (68.57%), Postives = 31/35 (88.57%), Query Frame = 0 

Query: 1  MVRKSERCLGSRLKNIKANKDNPIVIGDNTEKEVR 36
          MVR+SERCLGSRLK IK++KDN I+I DN E+++R
Sbjct: 1  MVRRSERCLGSRLKKIKSSKDNSILIEDNVEEDIR 35

[Close]
BLAST of MELO3C019338 vs. NCBI nr
Match: KAA0051301.1 (uncharacterized protein E6C27_scaffold55G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 52.8 bits (125), Expect = 7.3e-04
Identity = 24/31 (77.42%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 1  MVRKSERCLGSRLKNIKANKDNPIVIGDNTE 32
          MVR+SERCLGSRLK IK++KDNPI+I DN E
Sbjct: 1  MVRRSERCLGSRLKKIKSSKDNPILIEDNVE 31

[Close]
BLAST of MELO3C019338 vs. ExPASy TrEMBL
Match: A0A5A7TIM3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00690 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.9e-06
Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 1  MVRKSERCLGSRLKNIKANKDNPIVIGDNTEKEVRY 37
          MVR+SERCLG +LK IK+NKD+PIVI DNTE+EVRY
Sbjct: 1  MVRRSERCLGLQLKIIKSNKDDPIVIKDNTEEEVRY 36

[Close]
BLAST of MELO3C019338 vs. ExPASy TrEMBL
Match: A0A5D3E3X1 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold974G00070 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.6e-04
Identity = 24/35 (68.57%), Postives = 31/35 (88.57%), Query Frame = 0 

Query: 1  MVRKSERCLGSRLKNIKANKDNPIVIGDNTEKEVR 36
          MVR+SERCLGSRLK IK++KDN I+I DN E+++R
Sbjct: 1  MVRRSERCLGSRLKKIKSSKDNSILIEDNVEEDIR 35

[Close]
BLAST of MELO3C019338 vs. ExPASy TrEMBL
Match: A0A5A7UCM5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00080 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.6e-04
Identity = 24/31 (77.42%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 1  MVRKSERCLGSRLKNIKANKDNPIVIGDNTE 32
          MVR+SERCLGSRLK IK++KDNPI+I DN E
Sbjct: 1  MVRRSERCLGSRLKKIKSSKDNPILIEDNVE 31

The following BLAST results are available for this feature:
BLAST of MELO3C019338 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0043162.16.0e-0677.78uncharacterized protein E6C27_scaffold110G00260 [Cucumis melo var. makuwa] >TYK1... [more]
TYK30586.13.3e-0468.57protein Ycf2-like [Cucumis melo var. makuwa][more]
KAA0051301.17.3e-0477.42uncharacterized protein E6C27_scaffold55G00080 [Cucumis melo var. makuwa][more]
BLAST of MELO3C019338 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C019338 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TIM32.9e-0677.78Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3E3X11.6e-0468.57Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold974G00... [more]
A0A5A7UCM53.6e-0477.42Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of MELO3C019338 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C019338.1MELO3C019338.1mRNA