MELO3C019305 (gene) Melon (DHL92) v4

Overview


Name	MELO3C019305
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Glycine-rich RNA-binding protein 3
Location	chr11: 11085551 .. 11087520 (-)
RNA-Seq Expression	MELO3C019305
Synteny	MELO3C019305

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGGGCCACTTCATACATTTTTAGAAATGAAAATGAAAATGAAAATGAGCTAGTTTTTACTTTTTTTTTTCGGCCTCTAAAGGCCAATTGTAAAATCTGTGTCCTCAATCTATGAGTGTATTTGTAATATCAAAAACTCGATCACAAGCAATCACCAATGCAATGATGAGCAACACGAACACCTTGCTACTGCTTGCTAGAAAAGCACTAACCAATATCCAAACTCCAATTCTTACCTTTCGTTGCTTCTGTTCTCAATCCACCTCCGCTCTCTCATCTTCTCCTTCTGCACCAAGCAATAAGCTCTTCGTAGCAGGTTCACTTCTCTTCCTCCATCCACTTACACAGATGCACCACCCACTTGATTCAGATGCCTTTTACATTCATGAATTTGATCTTGTTTCTTCCTTTTCCTTCCAGGGTTGTCTTGGTCCATGGATGAGAGATCATTGAAAGATGCGTTTTCTTCCTTTGGGGAGGTTACTGAAGGTAATCGTGCATGTTGAGCTTAACCCTTTGATTTACCAGTTGTAGTCTACATGTTCGACGAAATGTCTAGTTGATTTCAGACCTCGGTTCATCACGTGTGCTTCTGGGTCGAAACATTTTGCTTCCTTGACTTTCATAATTCCATGGTTTTTCTTTCTAAACTAAATTTTGTTTCATTGAAGTTTCTTCTTTTATAATTCTTGTAACGAGAGAGGAAATGAGTTTGAGATGTTTAGGATTTAGGAGCGTTTTGTTTTGTAGCGTTTTACTATGCTTTTGTGATTTTCTTGAATATTGAGACAAACCAAACAATGAGAAATATAGAGATTGAAATAATAACGAATTTGAGAGGTGGGAAACTAGAATTTATATATGAGGTAAAAGGAATTTGATGTCCATTGGTAATCACTCTGGAACTTCACCAACAAAATAGCTTTTGGGGATGAAGTTCATTTGATAAGTTTAGATGAAATTGCATGACCATTTTGAAACTTCTGTGGTGATCACTAGTCTATAGAAACATTAATGTCCTGTGTCGATTTGTGATTAAAGATCACTCTTAAAGACTGAAACTTTGCCAGCAAAATAACTTATGGTGGAGATGGAGTTCATTTGATCAATGAGATGAAATTGAATGGTCGATGTGAAACTCTCGCACAATCACTAGAGGAACTTTGATGCCCATTGGTGATCACTCTAAAAACTTCAACAGCAAATATCCTACGGGTTTCATTTATACAGTTGGGATAAACTTCAATGACCACTGAAACTTCAGTGATCATCACTTTACAAATTTTGATATGCAGTAGTGATCACACTGAAACTTCATCAGCAACTGCTTATTGATTTGAGGTCTTATGTTAAGATTTTAATAATTTATATGTTATCTTGACAGTTAGGATAGTGTATGATAAAGACTCAGGTCGATCCAGAGGTTTTGGATTTGTGGATTTCGCAAATGAAAATGATGCACAGTGTGCAAAAGATGCAATGGATGGAAAGGCAAGTCTTTAATTAATAAGTAGTTTGATAAGGTTTAGTCTGTCAACCATAAATTACTGAAAGTGAAAGTCATTGAGTTACTTGCAGGCGGTATTAGGGCGGCCATTGAAGATAAGCTTTGCCCTTGAAAAGGTCCGTGGAGGACCTGTTGCCGTTCCTCGACTTTCAAACATCAACAACCTTGTGGGTCGAAGGTCTTGAAGCTCTTGGTATTTCATCTACATGTTGCATGAATATCTAATCTTGAACTATTCAATTCCTACTTCTAAATTTGATTTAGATCCTTGACTTGGTTTTGCTGGTATTGAAACCAATAGTATGAAGAACCTCAATTTAGTATTGTTTGATAATTACAGAGAAATACAATATCAATTTGGAAGAATTGACGGAACAAAATTCTTGTAGCACTAATCATGATTTATTTTTTATCAAATCATGATAGATAGTTCCCAATTTCTTTTATTAGAAATCTTGTTT

mRNA sequence

AAAAGGGCCACTTCATACATTTTTAGAAATGAAAATGAAAATGAAAATGAGCTAGTTTTTACTTTTTTTTTTCGGCCTCTAAAGGCCAATTGTAAAATCTGTGTCCTCAATCTATGAGTGTATTTGTAATATCAAAAACTCGATCACAAGCAATCACCAATGCAATGATGAGCAACACGAACACCTTGCTACTGCTTGCTAGAAAAGCACTAACCAATATCCAAACTCCAATTCTTACCTTTCGTTGCTTCTGTTCTCAATCCACCTCCGCTCTCTCATCTTCTCCTTCTGCACCAAGCAATAAGCTCTTCGTAGCAGGGTTGTCTTGGTCCATGGATGAGAGATCATTGAAAGATGCGTTTTCTTCCTTTGGGGAGGTTACTGAAGTTAGGATAGTGTATGATAAAGACTCAGGTCGATCCAGAGGTTTTGGATTTGTGGATTTCGCAAATGAAAATGATGCACAGTGTGCAAAAGATGCAATGGATGGAAAGGCGGTATTAGGGCGGCCATTGAAGATAAGCTTTGCCCTTGAAAAGGTCCGTGGAGGACCTGTTGCCGTTCCTCGACTTTCAAACATCAACAACCTTGTGGGTCGAAGGTCTTGAAGCTCTTGGTATTTCATCTACATGTTGCATGAATATCTAATCTTGAACTATTCAATTCCTACTTCTAAATTTGATTTAGATCCTTGACTTGGTTTTGCTGGTATTGAAACCAATAGTATGAAGAACCTCAATTTAGTATTGTTTGATAATTACAGAGAAATACAATATCAATTTGGAAGAATTGACGGAACAAAATTCTTGTAGCACTAATCATGATTTATTTTTTATCAAATCATGATAGATAGTTCCCAATTTCTTTTATTAGAAATCTTGTTT

Coding sequence (CDS)

ATGAGTGTATTTGTAATATCAAAAACTCGATCACAAGCAATCACCAATGCAATGATGAGCAACACGAACACCTTGCTACTGCTTGCTAGAAAAGCACTAACCAATATCCAAACTCCAATTCTTACCTTTCGTTGCTTCTGTTCTCAATCCACCTCCGCTCTCTCATCTTCTCCTTCTGCACCAAGCAATAAGCTCTTCGTAGCAGGGTTGTCTTGGTCCATGGATGAGAGATCATTGAAAGATGCGTTTTCTTCCTTTGGGGAGGTTACTGAAGTTAGGATAGTGTATGATAAAGACTCAGGTCGATCCAGAGGTTTTGGATTTGTGGATTTCGCAAATGAAAATGATGCACAGTGTGCAAAAGATGCAATGGATGGAAAGGCGGTATTAGGGCGGCCATTGAAGATAAGCTTTGCCCTTGAAAAGGTCCGTGGAGGACCTGTTGCCGTTCCTCGACTTTCAAACATCAACAACCTTGTGGGTCGAAGGTCTTGA

Protein sequence

MSVFVISKTRSQAITNAMMSNTNTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPSAPSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKAVLGRPLKISFALEKVRGGPVAVPRLSNINNLVGRRS

Homology

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BLAST of MELO3C019305 vs. NCBI nr
Match: XP_008455929.1 (PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Cucumis melo])

HSP 1 Score: 312.4 bits (799), Expect = 2.3e-81
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MSVFVISKTRSQAITNAMMSNTNTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPSA 60
           MSVFVISKTRSQAITNAMMSNTNTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPSA
Sbjct: 1   MSVFVISKTRSQAITNAMMSNTNTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPSA 60

Query: 61  PSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCA 120
           PSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCA
Sbjct: 61  PSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCA 120

Query: 121 KDAMDGKAVLGRPLKISFALEKVRGGPVAVPRLSNINNLVGRRS 165
           KDAMDGKAVLGRPLKISFALEKVRGGPVAVPRLSNINNLVGRRS
Sbjct: 121 KDAMDGKAVLGRPLKISFALEKVRGGPVAVPRLSNINNLVGRRS 164

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BLAST of MELO3C019305 vs. NCBI nr
Match: KAA0034781.1 (glycine-rich RNA-binding protein 3 [Cucumis melo var. makuwa] >TYK09579.1 glycine-rich RNA-binding protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 272.7 bits (696), Expect = 2.1e-69
Identity = 144/147 (97.96%), Postives = 144/147 (97.96%), Query Frame = 0


Query: 18  MMSNTNTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPSAPSNKLFVAGLSWSMDER 77
           MMSNTNTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPSAPSNKLFVAGLSWSMDER
Sbjct: 1   MMSNTNTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPSAPSNKLFVAGLSWSMDER 60

Query: 78  SLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKAVLGRPLKIS 137
           SLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKA   RPLKIS
Sbjct: 61  SLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKA--RRPLKIS 120

Query: 138 FALEKVRGGPVAVPRLSNINNLVGRRS 165
           FALEKVRGGPVAVPRLSNINNLVGRRS
Sbjct: 121 FALEKVRGGPVAVPRLSNINNLVGRRS 145

[Close]

BLAST of MELO3C019305 vs. NCBI nr
Match: XP_031736490.1 (glycine-rich RNA-binding protein 4, mitochondrial [Cucumis sativus] >KAE8652277.1 hypothetical protein Csa_021792 [Cucumis sativus])

HSP 1 Score: 271.9 bits (694), Expect = 3.5e-69
Identity = 147/164 (89.63%), Postives = 152/164 (92.68%), Query Frame = 0


Query: 1   MSVFV-ISKTRSQAITNAMMSNTNTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPS 60
           M VFV I+ TRSQAITNA MSNTNT LLLARKALTNIQTP L FRCFCSQSTS LSSSPS
Sbjct: 2   MFVFVIIANTRSQAITNATMSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTSPLSSSPS 61

Query: 61  APSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQC 120
            P+NKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFV+FAN NDAQC
Sbjct: 62  -PNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQC 121

Query: 121 AKDAMDGKAVLGRPLKISFALEKVRGGPVAVPRLSNINNLVGRR 164
           AKDAMDGKAVLGRPL+ISFAL+KVRG PV VPRLSNINNLVGRR
Sbjct: 122 AKDAMDGKAVLGRPLRISFALDKVRGEPVVVPRLSNINNLVGRR 164

[Close]

BLAST of MELO3C019305 vs. NCBI nr
Match: XP_022986397.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 246.5 bits (628), Expect = 1.6e-61
Identity = 126/151 (83.44%), Postives = 141/151 (93.38%), Query Frame = 0


Query: 18  MMSNTNTLLLLARKALTNIQTPILTFRCFCSQS----TSALSSSPSAPSNKLFVAGLSWS 77
           MMSN N L+LLAR+ALTNIQTP+L+FRCFCSQS    +SA SSSPSAP+NKLFVAGLSWS
Sbjct: 1   MMSNANALMLLARRALTNIQTPVLSFRCFCSQSSSSYSSAPSSSPSAPNNKLFVAGLSWS 60

Query: 78  MDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKAVLGRP 137
           +DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFV+F NE+DAQ AKDAMDGKA+LGRP
Sbjct: 61  LDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRP 120

Query: 138 LKISFALEKVRGGPVAVPRLSNINNLVGRRS 165
           L+ISFAL+KVRGGPV VPRLSNINN++GRRS
Sbjct: 121 LRISFALDKVRGGPVVVPRLSNINNVLGRRS 151

[Close]

BLAST of MELO3C019305 vs. NCBI nr
Match: XP_023512965.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 243.4 bits (620), Expect = 1.3e-60
Identity = 125/151 (82.78%), Postives = 140/151 (92.72%), Query Frame = 0


Query: 18  MMSNTNTLLLLARKALTNIQTPILTFRCFCSQ----STSALSSSPSAPSNKLFVAGLSWS 77
           MMSNTNTL+ L R+ALTNIQTP+L+FRCFCSQ    S+SA SSSPSAP+NKLFVAGLSWS
Sbjct: 1   MMSNTNTLMPLFRRALTNIQTPVLSFRCFCSQSSSSSSSAPSSSPSAPNNKLFVAGLSWS 60

Query: 78  MDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKAVLGRP 137
           +DERSLKDAFSS+GEVTEVRI+YDKDSGRSRGFGFV+F NE+DAQ AKDAMDGKA+LGRP
Sbjct: 61  LDERSLKDAFSSYGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRP 120

Query: 138 LKISFALEKVRGGPVAVPRLSNINNLVGRRS 165
           L+ISFAL+KVRGGPV VPRLSNINN+ GRRS
Sbjct: 121 LRISFALDKVRGGPVVVPRLSNINNVFGRRS 151

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BLAST of MELO3C019305 vs. ExPASy Swiss-Prot
Match: Q9LIS2 (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG4 PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.3e-18
Identity = 44/81 (54.32%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 62  SNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAK 121
           S+KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRSRGFGFV F+ E+ A  A 
Sbjct: 34  SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93

Query: 122 DAMDGKAVLGRPLKISFALEK 143
             MDGK + GR ++++ A E+
Sbjct: 94  KEMDGKELNGRQIRVNLATER 114

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BLAST of MELO3C019305 vs. ExPASy Swiss-Prot
Match: Q9FNR1 (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG3 PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.1e-17
Identity = 39/85 (45.88%), Postives = 64/85 (75.29%), Query Frame = 0


Query: 62  SNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAK 121
           S+KLF+ G+++SMDE SL++AF+ +GEV + R++ D+++GRSRGFGFV F +   A  A 
Sbjct: 39  SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98

Query: 122 DAMDGKAVLGRPLKISFALEKVRGG 147
            A+DG+ + GR +K+++A ++  GG
Sbjct: 99  QALDGRDLHGRVVKVNYANDRTSGG 123

[Close]

BLAST of MELO3C019305 vs. ExPASy Swiss-Prot
Match: Q9SVM8 (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG2 PE=1 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.1e-16
Identity = 38/81 (46.91%), Postives = 59/81 (72.84%), Query Frame = 0


Query: 62  SNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAK 121
           S KLF+ GLSW  D+ SL+DAF+ FG+V + +++ D+++GRSRGFGFV+F +E  A  A 
Sbjct: 34  STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93

Query: 122 DAMDGKAVLGRPLKISFALEK 143
             MDGK + GR ++++ A ++
Sbjct: 94  SEMDGKELNGRHIRVNPANDR 114

[Close]

BLAST of MELO3C019305 vs. ExPASy Swiss-Prot
Match: W8E7I1 (RNA-binding protein 3 OS=Capra hircus OX=9925 GN=RBM3 PE=2 SV=2)

HSP 1 Score: 83.2 bits (204), Expect = 3.0e-15
Identity = 40/87 (45.98%), Postives = 61/87 (70.11%), Query Frame = 0


Query: 59  SAPSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQ 118
           S+   KLFV GL+++ DER+L+D FSSFG ++EV +V D+++ RSRGFGF+ F N   A 
Sbjct: 2   SSEEGKLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHAS 61

Query: 119 CAKDAMDGKAVLGRPLKISFALEKVRG 146
            A  AM+G+++ GR +++  A +  RG
Sbjct: 62  NAMRAMNGESLDGRQIRVDHAGKSARG 88

[Close]

BLAST of MELO3C019305 vs. ExPASy Swiss-Prot
Match: P98179 (RNA-binding protein 3 OS=Homo sapiens OX=9606 GN=RBM3 PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.2e-15
Identity = 39/87 (44.83%), Postives = 61/87 (70.11%), Query Frame = 0


Query: 59  SAPSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQ 118
           S+   KLFV GL+++ DE++L+D FSSFG ++EV +V D+++ RSRGFGF+ F N   A 
Sbjct: 2   SSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHAS 61

Query: 119 CAKDAMDGKAVLGRPLKISFALEKVRG 146
            A  AM+G+++ GR +++  A +  RG
Sbjct: 62  VAMRAMNGESLDGRQIRVDHAGKSARG 88

[Close]

BLAST of MELO3C019305 vs. ExPASy TrEMBL
Match: A0A1S3C2R4 (glycine-rich RNA-binding protein 3, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103495992 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.1e-81
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MSVFVISKTRSQAITNAMMSNTNTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPSA 60
           MSVFVISKTRSQAITNAMMSNTNTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPSA
Sbjct: 1   MSVFVISKTRSQAITNAMMSNTNTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPSA 60

Query: 61  PSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCA 120
           PSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCA
Sbjct: 61  PSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCA 120

Query: 121 KDAMDGKAVLGRPLKISFALEKVRGGPVAVPRLSNINNLVGRRS 165
           KDAMDGKAVLGRPLKISFALEKVRGGPVAVPRLSNINNLVGRRS
Sbjct: 121 KDAMDGKAVLGRPLKISFALEKVRGGPVAVPRLSNINNLVGRRS 164

[Close]

BLAST of MELO3C019305 vs. ExPASy TrEMBL
Match: A0A5D3CH06 (Glycine-rich RNA-binding protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold458G00050 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 1.0e-69
Identity = 144/147 (97.96%), Postives = 144/147 (97.96%), Query Frame = 0


Query: 18  MMSNTNTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPSAPSNKLFVAGLSWSMDER 77
           MMSNTNTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPSAPSNKLFVAGLSWSMDER
Sbjct: 1   MMSNTNTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPSAPSNKLFVAGLSWSMDER 60

Query: 78  SLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKAVLGRPLKIS 137
           SLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKA   RPLKIS
Sbjct: 61  SLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKA--RRPLKIS 120

Query: 138 FALEKVRGGPVAVPRLSNINNLVGRRS 165
           FALEKVRGGPVAVPRLSNINNLVGRRS
Sbjct: 121 FALEKVRGGPVAVPRLSNINNLVGRRS 145

[Close]

BLAST of MELO3C019305 vs. ExPASy TrEMBL
Match: A0A0A0LQB7 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G416100 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 3.7e-64
Identity = 133/145 (91.72%), Postives = 137/145 (94.48%), Query Frame = 0


Query: 19  MSNTNTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPSAPSNKLFVAGLSWSMDERS 78
           MSNTNT LLLARKALTNIQTP L FRCFCSQSTS LSSSPS P+NKLFVAGLSWSMDERS
Sbjct: 1   MSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTSPLSSSPS-PNNKLFVAGLSWSMDERS 60

Query: 79  LKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKAVLGRPLKISF 138
           LKDAFSSFGEVTEVRIVYDKDSGRSRGFGFV+FAN NDAQCAKDAMDGKAVLGRPL+ISF
Sbjct: 61  LKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPLRISF 120

Query: 139 ALEKVRGGPVAVPRLSNINNLVGRR 164
           AL+KVRG PV VPRLSNINNLVGRR
Sbjct: 121 ALDKVRGEPVVVPRLSNINNLVGRR 144

[Close]

BLAST of MELO3C019305 vs. ExPASy TrEMBL
Match: A0A6J1J7F1 (glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111484146 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 7.6e-62
Identity = 126/151 (83.44%), Postives = 141/151 (93.38%), Query Frame = 0


Query: 18  MMSNTNTLLLLARKALTNIQTPILTFRCFCSQS----TSALSSSPSAPSNKLFVAGLSWS 77
           MMSN N L+LLAR+ALTNIQTP+L+FRCFCSQS    +SA SSSPSAP+NKLFVAGLSWS
Sbjct: 1   MMSNANALMLLARRALTNIQTPVLSFRCFCSQSSSSYSSAPSSSPSAPNNKLFVAGLSWS 60

Query: 78  MDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKAVLGRP 137
           +DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFV+F NE+DAQ AKDAMDGKA+LGRP
Sbjct: 61  LDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRP 120

Query: 138 LKISFALEKVRGGPVAVPRLSNINNLVGRRS 165
           L+ISFAL+KVRGGPV VPRLSNINN++GRRS
Sbjct: 121 LRISFALDKVRGGPVVVPRLSNINNVLGRRS 151

[Close]

BLAST of MELO3C019305 vs. ExPASy TrEMBL
Match: A0A6J1FYH8 (glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111448693 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.6e-59
Identity = 124/151 (82.12%), Postives = 139/151 (92.05%), Query Frame = 0


Query: 18  MMSNTNTLLLLARKALTNIQTPILTFRCFCSQS----TSALSSSPSAPSNKLFVAGLSWS 77
           MMSN N L+LLAR+ALTNIQTP+L+FRCFCSQS    +SA SSSPSAP+NKLFVAGLSWS
Sbjct: 1   MMSNANALMLLARRALTNIQTPVLSFRCFCSQSSSSYSSAPSSSPSAPNNKLFVAGLSWS 60

Query: 78  MDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKAVLGRP 137
           +DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFV+F NE+DAQ AKDAMDGKA+LGRP
Sbjct: 61  LDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRP 120

Query: 138 LKISFALEKVRGGPVAVPRLSNINNLVGRRS 165
           L+ISFAL+KVRGGPV +PRLSNI N+ GRRS
Sbjct: 121 LRISFALDKVRGGPVVIPRLSNI-NMFGRRS 150

[Close]

BLAST of MELO3C019305 vs. TAIR 10
Match: AT3G08000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 159.8 bits (403), Expect = 1.8e-39
Identity = 78/99 (78.79%), Postives = 88/99 (88.89%), Query Frame = 0


Query: 55  SSSPSAPSNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANE 114
           +SS ++PS+KLF+ GLSWS+DE+SLKDAFSSFGEV EVRI YDK SGRSRGFGFVDFA E
Sbjct: 33  TSSSASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEE 92

Query: 115 NDAQCAKDAMDGKAVLGRPLKISFALEKVRGGPVAVPRL 154
            DA  AKDAMDGK +LGRPL+ISFALE+VRGGPV VPRL
Sbjct: 93  GDALSAKDAMDGKGLLGRPLRISFALERVRGGPVVVPRL 131

[Close]

BLAST of MELO3C019305 vs. TAIR 10
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 94.4 bits (233), Expect = 9.3e-20
Identity = 44/81 (54.32%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 62  SNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAK 121
           S+KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRSRGFGFV F+ E+ A  A 
Sbjct: 34  SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93

Query: 122 DAMDGKAVLGRPLKISFALEK 143
             MDGK + GR ++++ A E+
Sbjct: 94  KEMDGKELNGRQIRVNLATER 114

[Close]

BLAST of MELO3C019305 vs. TAIR 10
Match: AT3G23830.2 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 94.4 bits (233), Expect = 9.3e-20
Identity = 44/81 (54.32%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 62  SNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAK 121
           S+KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRSRGFGFV F+ E+ A  A 
Sbjct: 34  SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93

Query: 122 DAMDGKAVLGRPLKISFALEK 143
             MDGK + GR ++++ A E+
Sbjct: 94  KEMDGKELNGRQIRVNLATER 114

[Close]

BLAST of MELO3C019305 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 91.3 bits (225), Expect = 7.9e-19
Identity = 39/85 (45.88%), Postives = 64/85 (75.29%), Query Frame = 0


Query: 62  SNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAK 121
           S+KLF+ G+++SMDE SL++AF+ +GEV + R++ D+++GRSRGFGFV F +   A  A 
Sbjct: 39  SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98

Query: 122 DAMDGKAVLGRPLKISFALEKVRGG 147
            A+DG+ + GR +K+++A ++  GG
Sbjct: 99  QALDGRDLHGRVVKVNYANDRTSGG 123

[Close]

BLAST of MELO3C019305 vs. TAIR 10
Match: AT4G13850.4 (glycine-rich RNA-binding protein 2 )

HSP 1 Score: 90.1 bits (222), Expect = 1.8e-18
Identity = 40/85 (47.06%), Postives = 61/85 (71.76%), Query Frame = 0


Query: 62  SNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAK 121
           S KLF+ GLSW  D+ SL+DAF+ FG+V + +++ D+++GRSRGFGFV+F +E  A  A 
Sbjct: 34  STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93

Query: 122 DAMDGKAVLGRPLKISFALEKVRGG 147
             MDGK + GR ++++ A ++  GG
Sbjct: 94  SEMDGKELNGRHIRVNPANDRPSGG 118

The following BLAST results are available for this feature:

BLAST of MELO3C019305 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455929.1	2.3e-81	100.00	PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Cucumis melo]	[more]
KAA0034781.1	2.1e-69	97.96	glycine-rich RNA-binding protein 3 [Cucumis melo var. makuwa] >TYK09579.1 glycin...	[more]
XP_031736490.1	3.5e-69	89.63	glycine-rich RNA-binding protein 4, mitochondrial [Cucumis sativus] >KAE8652277....	[more]
XP_022986397.1	1.6e-61	83.44	glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita maxima]	[more]
XP_023512965.1	1.3e-60	82.78	glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita pepo subsp. pe...	[more]

BLAST of MELO3C019305 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LIS2	1.3e-18	54.32	Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9FNR1	1.1e-17	45.88	Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9SVM8	2.1e-16	46.91	Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
W8E7I1	3.0e-15	45.98	RNA-binding protein 3 OS=Capra hircus OX=9925 GN=RBM3 PE=2 SV=2	[more]
P98179	5.2e-15	44.83	RNA-binding protein 3 OS=Homo sapiens OX=9606 GN=RBM3 PE=1 SV=1	[more]

BLAST of MELO3C019305 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C2R4	1.1e-81	100.00	glycine-rich RNA-binding protein 3, mitochondrial OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A5D3CH06	1.0e-69	97.96	Glycine-rich RNA-binding protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A0A0LQB7	3.7e-64	91.72	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G416100 PE=4 SV...	[more]
A0A6J1J7F1	7.6e-62	83.44	glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita maxima OX=36...	[more]
A0A6J1FYH8	1.6e-59	82.12	glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita moschata OX=...	[more]

BLAST of MELO3C019305 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G08000.1	1.8e-39	78.79	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G23830.1	9.3e-20	54.32	glycine-rich RNA-binding protein 4	[more]
AT3G23830.2	9.3e-20	54.32	glycine-rich RNA-binding protein 4	[more]
AT5G61030.1	7.9e-19	45.88	glycine-rich RNA-binding protein 3	[more]
AT4G13850.4	1.8e-18	47.06	glycine-rich RNA-binding protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 64..137 e-value: 1.3E-26 score: 104.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 65..135 e-value: 1.7E-21 score: 75.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 63..141 score: 20.729872
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 47..144 e-value: 9.1E-32 score: 112.2
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 25..157
None	No IPR available	PANTHER	PTHR15241:SF334	GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL	coord: 25..157
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 50..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019305.1	MELO3C019305.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding