MELO3C019272.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C019272.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionCDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase
Locationchr11: 11125421 .. 11126692 (-)
RNA-Seq ExpressionMELO3C019272.jh1
SyntenyMELO3C019272.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCTTTCCTTTTCAACCCTTCTTCTTCATCTTCTTCATCTTCTTCCTCAATCCTCTCTCTCACCAACCTCTTCTTCAACTTCAGTTTCAAGGTATCTATTTTTCACTCCCTCTGCGGATCTATTCCAATCCAATCGCTTCTCTTTCGTTTCATTCTTCCCTTCGTCTTTCATTTCTCTACTCAACCTCTATTTGTATCCGATTCCATCCTTCAATACCTGATTTGGTGTTTTTTAGTTTATTCTTTCATTTTGAGTCTGGTTTTTCAACCTCCAAATTGAATTTTAGGGTTTTTCTGCTAGGTTTTTTGTCAATCCTTTGACGATCTTCTTCGACGATTCTCTCTTTGTTTTGTTTCGACTCTCCAAAAACAAGTGTTGTTGATTTATGAGTTTGCTTTTTCAAATTTTACAGGTGTCATACATAGTTTTGGTTTTAGGGCAAAATCTATATGATTAACAAATCCATATTCTAAGATACATCAATTTCATAATTGACTTCTGTCTCTTCTTATTGAAGATTGTTTGTTCTGTAGGGAGGATTTGATAGGTAGGTTGGGCCTTGTTCCCTTTCCCTTTTTTTTTCTTTTTTTTGTTTATTCTGTATATCCCACTTTCTCCATATTGTCGCTCATTTGATTTCTATTTCAGTGGGATAATCTACAAAAACATGATATGACAAGATTTTATTGATTTGACATAAAGATCTCATCATTCTATAAGTTCTCCAAGAATTATAAATCAATTCATCCATGCTTTTAGCGAACGCCACCTCATAAAGTTTTTATAATGTTCACCGATCGCTGTTTTTGATGGATTTTTTGGAATTTGATAGTTGAAAATGGGAAGCAAAGCACCAAGCTGGGCTGATCAGTGGGGTTCAGGAAATTACGGAGTGGAAGACGACGACAACAACAATGCGGTCACAAAGAAAGGGAGCAGCAATGGGAATAGTAGCAAGAAGATGGCAGAGGTAAAGGCTGCAGCTTCAGCTGGATTTGTGAAGGCAAAGGCTGTTGCAACTGTGGGTGCTCAAAAAGTGAAATCTGGAACTTCGGTAGGCATCAAATGGGTCAAGAATCAGTACCAGAAAAAGGTCTCCAAATGACTCCAAATATGTTTAGGCCTCTCCATTTTATTTTCTTTTTCTTGGTCTTTAAATATAGCTTTGTAGTCTGAACTTTTGTAGTCTTTTTTAGTTTCCTGCATTTTGTCAAACTCTTTTCCATAAACTTCAAACGACAAATGAGATATCACATCATAAATTGCTATAA

mRNA sequence

TTCTTTCCTTTTCAACCCTTCTTCTTCATCTTCTTCATCTTCTTCCTCAATCCTCTCTCTCACCAACCTCTTCTTCAACTTCAGTTTCAAGTTGAAAATGGGAAGCAAAGCACCAAGCTGGGCTGATCAGTGGGGTTCAGGAAATTACGGAGTGGAAGACGACGACAACAACAATGCGGTCACAAAGAAAGGGAGCAGCAATGGGAATAGTAGCAAGAAGATGGCAGAGGTAAAGGCTGCAGCTTCAGCTGGATTTGTGAAGGCAAAGGCTGTTGCAACTGTGGGTGCTCAAAAAGTGAAATCTGGAACTTCGGTAGGCATCAAATGGGTCAAGAATCAGTACCAGAAAAAGGTCTCCAAATGACTCCAAATATGTTTAGGCCTCTCCATTTTATTTTCTTTTTCTTGGTCTTTAAATATAGCTTTGTAGTCTGAACTTTTGTAGTCTTTTTTAGTTTCCTGCATTTTGTCAAACTCTTTTCCATAAACTTCAAACGACAAATGAGATATCACATCATAAATTGCTATAA

Coding sequence (CDS)

ATGGGAAGCAAAGCACCAAGCTGGGCTGATCAGTGGGGTTCAGGAAATTACGGAGTGGAAGACGACGACAACAACAATGCGGTCACAAAGAAAGGGAGCAGCAATGGGAATAGTAGCAAGAAGATGGCAGAGGTAAAGGCTGCAGCTTCAGCTGGATTTGTGAAGGCAAAGGCTGTTGCAACTGTGGGTGCTCAAAAAGTGAAATCTGGAACTTCGGTAGGCATCAAATGGGTCAAGAATCAGTACCAGAAAAAGGTCTCCAAATGA

Protein sequence

MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVATVGAQKVKSGTSVGIKWVKNQYQKKVSK
Homology
BLAST of MELO3C019272.jh1 vs. NCBI nr
Match: KAA0059574.1 (hypothetical protein E6C27_scaffold4837G00020 [Cucumis melo var. makuwa] >KAE8652289.1 hypothetical protein Csa_022099 [Cucumis sativus] >TYK24204.1 hypothetical protein E5676_scaffold27G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 164 bits (414), Expect = 1.33e-50
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0

Query: 1  MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 60
          MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA
Sbjct: 1  MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 60

Query: 61 TVGAQKVKSGTSVGIKWVKNQYQKKVSK 88
          TVGAQKVKSGTSVGIKWVKNQYQKKVSK
Sbjct: 61 TVGAQKVKSGTSVGIKWVKNQYQKKVSK 88

BLAST of MELO3C019272.jh1 vs. NCBI nr
Match: KAG7010736.1 (hypothetical protein SDJN02_27532, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 146 bits (368), Expect = 1.34e-43
Identity = 80/88 (90.91%), Postives = 84/88 (95.45%), Query Frame = 0

Query: 1  MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 60
          MGSKAPSWADQWGSG+YGVEDDDN  A+TKKGSSNGNSSKKMA+VKAAASAGFVKAK+ A
Sbjct: 1  MGSKAPSWADQWGSGDYGVEDDDNT-AMTKKGSSNGNSSKKMADVKAAASAGFVKAKSAA 60

Query: 61 TVGAQKVKSGTSVGIKWVKNQYQKKVSK 88
           VGAQKVKSGTSVGIKWVKNQYQKKVSK
Sbjct: 61 AVGAQKVKSGTSVGIKWVKNQYQKKVSK 87

BLAST of MELO3C019272.jh1 vs. NCBI nr
Match: KAG6570886.1 (hypothetical protein SDJN03_29801, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 142 bits (358), Expect = 2.06e-41
Identity = 78/87 (89.66%), Postives = 82/87 (94.25%), Query Frame = 0

Query: 1  MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 60
          MGSKAPSWADQWGSG+YGVEDDDN  A+TKKGSSNGNSSKKMA+VKAAASAGFVKAK+ A
Sbjct: 1  MGSKAPSWADQWGSGDYGVEDDDNT-AMTKKGSSNGNSSKKMADVKAAASAGFVKAKSAA 60

Query: 61 TVGAQKVKSGTSVGIKWVKNQYQKKVS 87
           VGAQKVKSGTSVGIKWVKNQYQKK S
Sbjct: 61 AVGAQKVKSGTSVGIKWVKNQYQKKKS 86

BLAST of MELO3C019272.jh1 vs. NCBI nr
Match: KAG7034974.1 (hypothetical protein SDJN02_01767, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 143 bits (361), Expect = 2.34e-41
Identity = 80/88 (90.91%), Postives = 81/88 (92.05%), Query Frame = 0

Query: 1   MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 60
           MGSKAPSWADQWGSGNYGVEDDD    V KKGSSNG+SSKKM EVKAAASAGFVKAKAVA
Sbjct: 91  MGSKAPSWADQWGSGNYGVEDDDK--MVAKKGSSNGSSSKKMTEVKAAASAGFVKAKAVA 150

Query: 61  TVGAQKVKSGTSVGIKWVKNQYQKKVSK 88
            VGAQKVKSGTSVGIKWVKNQYQKKVSK
Sbjct: 151 AVGAQKVKSGTSVGIKWVKNQYQKKVSK 176

BLAST of MELO3C019272.jh1 vs. NCBI nr
Match: KAG6604861.1 (hypothetical protein SDJN03_02178, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137 bits (345), Expect = 1.48e-38
Identity = 76/85 (89.41%), Postives = 77/85 (90.59%), Query Frame = 0

Query: 1   MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 60
           MGSKAPSWADQWGSGNYGVEDDD    V KKGS NG+SSKKM EVKAAASAGFVKAKAVA
Sbjct: 80  MGSKAPSWADQWGSGNYGVEDDDK--MVAKKGSGNGSSSKKMTEVKAAASAGFVKAKAVA 139

Query: 61  TVGAQKVKSGTSVGIKWVKNQYQKK 85
            VGAQKVKSGTSVGIKWVKNQYQKK
Sbjct: 140 AVGAQKVKSGTSVGIKWVKNQYQKK 162

BLAST of MELO3C019272.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DKS5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold27G00040 PE=4 SV=1)

HSP 1 Score: 164 bits (414), Expect = 6.42e-51
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0

Query: 1  MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 60
          MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA
Sbjct: 1  MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 60

Query: 61 TVGAQKVKSGTSVGIKWVKNQYQKKVSK 88
          TVGAQKVKSGTSVGIKWVKNQYQKKVSK
Sbjct: 61 TVGAQKVKSGTSVGIKWVKNQYQKKVSK 88

BLAST of MELO3C019272.jh1 vs. ExPASy TrEMBL
Match: A0A0A0LR11 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G418340 PE=4 SV=1)

HSP 1 Score: 164 bits (414), Expect = 9.10e-50
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0

Query: 1   MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 60
           MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA
Sbjct: 86  MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 145

Query: 61  TVGAQKVKSGTSVGIKWVKNQYQKKVSK 88
           TVGAQKVKSGTSVGIKWVKNQYQKKVSK
Sbjct: 146 TVGAQKVKSGTSVGIKWVKNQYQKKVSK 173

BLAST of MELO3C019272.jh1 vs. ExPASy TrEMBL
Match: A0A5C7HG95 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_020628 PE=4 SV=1)

HSP 1 Score: 120 bits (301), Expect = 1.10e-33
Identity = 70/87 (80.46%), Postives = 76/87 (87.36%), Query Frame = 0

Query: 1  MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 60
          MGSKAPSWADQWGSG++G E+DDN   VTKK SS+G SSKKMAE KAAASAGF KAKA A
Sbjct: 1  MGSKAPSWADQWGSGSFGDEEDDNK-LVTKK-SSSGGSSKKMAEAKAAASAGFDKAKAAA 60

Query: 61 TVGAQKVKSGTSVGIKWVKNQYQKKVS 87
          +VGAQKVKSGTSVG+KWVK QYQKK S
Sbjct: 61 SVGAQKVKSGTSVGLKWVKKQYQKKSS 85

BLAST of MELO3C019272.jh1 vs. ExPASy TrEMBL
Match: A0A2N9I6Q9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47686 PE=4 SV=1)

HSP 1 Score: 108 bits (270), Expect = 5.37e-29
Identity = 60/88 (68.18%), Postives = 73/88 (82.95%), Query Frame = 0

Query: 1  MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 60
          MGSKAPSW DQW + +YG +++D++  +TK G+S+GN   K+AE KAAAS GF KAKA A
Sbjct: 1  MGSKAPSWTDQWSTDSYGGKENDDDKLMTKVGNSSGN---KVAEAKAAASVGFDKAKAAA 60

Query: 61 TVGAQKVKSGTSVGIKWVKNQYQKKVSK 88
          +V AQKVKSGTS+GIKWVKNQYQKKVSK
Sbjct: 61 SVSAQKVKSGTSLGIKWVKNQYQKKVSK 85

BLAST of MELO3C019272.jh1 vs. ExPASy TrEMBL
Match: A0A2G5E5C3 (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_01100038v1 PE=4 SV=1)

HSP 1 Score: 108 bits (269), Expect = 7.63e-29
Identity = 64/89 (71.91%), Postives = 72/89 (80.90%), Query Frame = 0

Query: 1  MGSKAPSWADQWGSGNYGVE-DDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAV 60
          M  +APSWADQWGSG YG + +DD+NN  TKKGSS   S KKMA++K+ ASAG  KAKA 
Sbjct: 1  MAKEAPSWADQWGSGGYGADPEDDHNN--TKKGSSG--SGKKMADMKSTASAGLDKAKAA 60

Query: 61 ATVGAQKVKSGTSVGIKWVKNQYQKKVSK 88
          A VGAQKVKSGTSVGIKW+KNQYQKK SK
Sbjct: 61 AAVGAQKVKSGTSVGIKWMKNQYQKKTSK 85

BLAST of MELO3C019272.jh1 vs. TAIR 10
Match: AT3G48180.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19020.1); Has 84 Blast hits to 84 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 2.0e-05
Identity = 33/82 (40.24%), Postives = 44/82 (53.66%), Query Frame = 0

Query: 7  SWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVATVGAQK 66
          SWA+QW S      +  ++   T  G   G SSK     K    AG  K KA A+ G +K
Sbjct: 5  SWAEQWDS------NQQSSGKTTHGGEGGGASSK----YKEKVGAGLGKTKAAASSGLKK 64

Query: 67 VKSGTSVGIKWVKNQYQKKVSK 89
          VK GTS+G+ WVK++Y K  +K
Sbjct: 65 VKIGTSLGLNWVKDKYNKTTTK 76

BLAST of MELO3C019272.jh1 vs. TAIR 10
Match: AT1G19020.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48180.1); Has 88 Blast hits to 88 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.0 bits (97), Expect = 3.0e-04
Identity = 30/83 (36.14%), Postives = 46/83 (55.42%), Query Frame = 0

Query: 7  SWADQW-GSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVATVGAQ 66
          SWADQW  SG+        + AV +  SS   ++    + K     G  K KAVA+ G +
Sbjct: 5  SWADQWDNSGDSAKGGRIGSGAVVR--SSGSGATSNTTKYKEKMGQGLDKTKAVASSGFK 64

Query: 67 KVKSGTSVGIKWVKNQYQKKVSK 89
          K+K+G+++G +WVK++Y K   K
Sbjct: 65 KLKTGSAIGFRWVKDKYHKTTHK 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0059574.11.33e-50100.00hypothetical protein E6C27_scaffold4837G00020 [Cucumis melo var. makuwa] >KAE865... [more]
KAG7010736.11.34e-4390.91hypothetical protein SDJN02_27532, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6570886.12.06e-4189.66hypothetical protein SDJN03_29801, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7034974.12.34e-4190.91hypothetical protein SDJN02_01767, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6604861.11.48e-3889.41hypothetical protein SDJN03_02178, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DKS56.42e-51100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LR119.10e-50100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G418340 PE=4 SV=1[more]
A0A5C7HG951.10e-3380.46Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_020628 PE=4 SV=1[more]
A0A2N9I6Q95.37e-2968.18Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47686 PE=4 SV=1[more]
A0A2G5E5C37.63e-2971.91Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_01100038v1 PE=4... [more]
Match NameE-valueIdentityDescription
AT3G48180.12.0e-0540.24unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G19020.13.0e-0436.14unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..41
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..42
NoneNo IPR availablePANTHERPTHR33386OS02G0740600 PROTEINcoord: 1..88
NoneNo IPR availablePANTHERPTHR33386:SF13ANKYRIN REPEAT PROTEINcoord: 1..88

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C019272.jh1.t1MELO3C019272.jh1.t1mRNA