MELO3C019228 (gene) Melon (DHL92) v4

Overview


Name	MELO3C019228
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Rab-GAP TBC domain-containing protein
Location	chr11: 9439721 .. 9439969 (+)
RNA-Seq Expression	MELO3C019228
Synteny	MELO3C019228

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTACCGTCGTTGAAAGTGGTAGATACATCACAGCTCCTGTAATCTCAGAGGATGATCAGCCCATTCATGATCCACTTGTACTCTTGGGAATAAATCCGGACAAAGGTCCAGCTGTACCTCAAGATACTGGCCCCATCGATGGCAATCTGGATGGTTCACGATCAACTCCTAATAATAATTTGGAAACTGCGAAGGATCCGAAAATAATTCAGTGGATGCTTACTTTACATCATATAGGTTGGTAA

mRNA sequence

ATGTTTACCGTCGTTGAAAGTGGTAGATACATCACAGCTCCTGTAATCTCAGAGGATGATCAGCCCATTCATGATCCACTTGTACTCTTGGGAATAAATCCGGACAAAGGTCCAGCTGTACCTCAAGATACTGGCCCCATCGATGGCAATCTGGATGGTTCACGATCAACTCCTAATAATAATTTGGAAACTGCGAAGGATCCGAAAATAATTCAGTGGATGCTTACTTTACATCATATAGGTTGGTAA

Coding sequence (CDS)

ATGTTTACCGTCGTTGAAAGTGGTAGATACATCACAGCTCCTGTAATCTCAGAGGATGATCAGCCCATTCATGATCCACTTGTACTCTTGGGAATAAATCCGGACAAAGGTCCAGCTGTACCTCAAGATACTGGCCCCATCGATGGCAATCTGGATGGTTCACGATCAACTCCTAATAATAATTTGGAAACTGCGAAGGATCCGAAAATAATTCAGTGGATGCTTACTTTACATCATATAGGTTGGTAA

Protein sequence

MFTVVESGRYITAPVISEDDQPIHDPLVLLGINPDKGPAVPQDTGPIDGNLDGSRSTPNNNLETAKDPKIIQWMLTLHHIGW

Homology

[Close]

BLAST of MELO3C019228 vs. NCBI nr
Match: TYJ98321.1 (TBC1 domain family member 17 [Cucumis melo var. makuwa])

HSP 1 Score: 166.0 bits (419), Expect = 1.4e-37
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 1   MFTVVESGRYITAPVISEDDQPIHDPLVLLGINPDKGPAVPQDTGPIDGNLDGSRSTPNN 60
           MFT+VESGRYITA VISEDDQPIHDPLVLLGINPDKGPAVPQDTGPIDGNLDGSRSTPNN
Sbjct: 171 MFTIVESGRYITATVISEDDQPIHDPLVLLGINPDKGPAVPQDTGPIDGNLDGSRSTPNN 230

Query: 61  NLETAKDPKIIQWMLTLHHI 81
           NLETAKDPKIIQWMLTLHHI
Sbjct: 231 NLETAKDPKIIQWMLTLHHI 250

[Close]

BLAST of MELO3C019228 vs. NCBI nr
Match: KAA0032483.1 (TBC1 domain family member 17 [Cucumis melo var. makuwa])

HSP 1 Score: 159.8 bits (403), Expect = 9.7e-36
Identity = 76/80 (95.00%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 1   MFTVVESGRYITAPVISEDDQPIHDPLVLLGINPDKGPAVPQDTGPIDGNLDGSRSTPNN 60
           MFTVVESGRYITAPVISEDDQPIHDPLVLL INPDKGP VPQDTGP DGNLDGSRSTPNN
Sbjct: 136 MFTVVESGRYITAPVISEDDQPIHDPLVLLEINPDKGPTVPQDTGPTDGNLDGSRSTPNN 195

Query: 61  NLETAKDPKIIQWMLTLHHI 81
           NLETAKDPKIIQWMLTLH I
Sbjct: 196 NLETAKDPKIIQWMLTLHQI 215

[Close]

BLAST of MELO3C019228 vs. NCBI nr
Match: XP_008463439.1 (PREDICTED: TBC1 domain family member 17 [Cucumis melo] >KAA0025500.1 TBC1 domain family member 17 [Cucumis melo var. makuwa] >TYK00364.1 TBC1 domain family member 17 [Cucumis melo var. makuwa])

HSP 1 Score: 146.7 bits (369), Expect = 8.5e-32
Identity = 70/81 (86.42%), Postives = 71/81 (87.65%), Query Frame = 0


Query: 1   MFTVVESGRYITAPVISEDDQPIHDPLVLLGINPDKGPAVPQDTGPIDGNLDGSRSTPNN 60
           MF VV SGRYITAPVI+ED QPIHDPLVLL  NPD GPAVPQDTGP DGN DGSRSTPNN
Sbjct: 110 MFPVVGSGRYITAPVITEDGQPIHDPLVLLETNPDNGPAVPQDTGPADGNPDGSRSTPNN 169

Query: 61  NLETAKDPKIIQWMLTLHHIG 82
           NLET KDPKIIQWMLTLH IG
Sbjct: 170 NLETVKDPKIIQWMLTLHQIG 190

[Close]

BLAST of MELO3C019228 vs. NCBI nr
Match: XP_004152917.1 (GTPase-activating protein gyp7 [Cucumis sativus] >KAE8650139.1 hypothetical protein Csa_009471 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 9.4e-31
Identity = 69/81 (85.19%), Postives = 70/81 (86.42%), Query Frame = 0


Query: 1   MFTVVESGRYITAPVISEDDQPIHDPLVLLGINPDKGPAVPQDTGPIDGNLDGSRSTPNN 60
           MF VV SGRYITAPVI+ED QPIHDPLVLL  NPDKGPAVPQDT   DGN DGSRSTPNN
Sbjct: 109 MFPVVGSGRYITAPVITEDGQPIHDPLVLLETNPDKGPAVPQDTSTADGNPDGSRSTPNN 168

Query: 61  NLETAKDPKIIQWMLTLHHIG 82
           NLET KDPKIIQWMLTLH IG
Sbjct: 169 NLETVKDPKIIQWMLTLHQIG 189

[Close]

BLAST of MELO3C019228 vs. NCBI nr
Match: XP_038906214.1 (GTPase-activating protein GYP7 [Benincasa hispida])

HSP 1 Score: 138.3 bits (347), Expect = 3.0e-29
Identity = 68/81 (83.95%), Postives = 71/81 (87.65%), Query Frame = 0


Query: 1   MFTVVESGRYITAPVISEDDQPIHDPLVLLGINPDKGPAVPQDTGPIDGNLDGSRSTPNN 60
           MF VV SGRYITAPVI+ED QPIHDPLVLL  NP+KGPAVPQDTGP D NLDGSRST +N
Sbjct: 110 MFPVVGSGRYITAPVITEDGQPIHDPLVLLETNPEKGPAVPQDTGP-DANLDGSRSTSSN 169

Query: 61  NLETAKDPKIIQWMLTLHHIG 82
           NLET KDPKIIQWMLTLH IG
Sbjct: 170 NLETVKDPKIIQWMLTLHQIG 189

[Close]

BLAST of MELO3C019228 vs. ExPASy TrEMBL
Match: A0A5D3BI26 (TBC1 domain family member 17 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G00440 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 6.6e-38
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 1   MFTVVESGRYITAPVISEDDQPIHDPLVLLGINPDKGPAVPQDTGPIDGNLDGSRSTPNN 60
           MFT+VESGRYITA VISEDDQPIHDPLVLLGINPDKGPAVPQDTGPIDGNLDGSRSTPNN
Sbjct: 171 MFTIVESGRYITATVISEDDQPIHDPLVLLGINPDKGPAVPQDTGPIDGNLDGSRSTPNN 230

Query: 61  NLETAKDPKIIQWMLTLHHI 81
           NLETAKDPKIIQWMLTLHHI
Sbjct: 231 NLETAKDPKIIQWMLTLHHI 250

[Close]

BLAST of MELO3C019228 vs. ExPASy TrEMBL
Match: A0A5A7SQ27 (TBC1 domain family member 17 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold500G00070 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 4.7e-36
Identity = 76/80 (95.00%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 1   MFTVVESGRYITAPVISEDDQPIHDPLVLLGINPDKGPAVPQDTGPIDGNLDGSRSTPNN 60
           MFTVVESGRYITAPVISEDDQPIHDPLVLL INPDKGP VPQDTGP DGNLDGSRSTPNN
Sbjct: 136 MFTVVESGRYITAPVISEDDQPIHDPLVLLEINPDKGPTVPQDTGPTDGNLDGSRSTPNN 195

Query: 61  NLETAKDPKIIQWMLTLHHI 81
           NLETAKDPKIIQWMLTLH I
Sbjct: 196 NLETAKDPKIIQWMLTLHQI 215

[Close]

BLAST of MELO3C019228 vs. ExPASy TrEMBL
Match: A0A5D3BM65 (TBC1 domain family member 17 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00280 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.1e-32
Identity = 70/81 (86.42%), Postives = 71/81 (87.65%), Query Frame = 0


Query: 1   MFTVVESGRYITAPVISEDDQPIHDPLVLLGINPDKGPAVPQDTGPIDGNLDGSRSTPNN 60
           MF VV SGRYITAPVI+ED QPIHDPLVLL  NPD GPAVPQDTGP DGN DGSRSTPNN
Sbjct: 110 MFPVVGSGRYITAPVITEDGQPIHDPLVLLETNPDNGPAVPQDTGPADGNPDGSRSTPNN 169

Query: 61  NLETAKDPKIIQWMLTLHHIG 82
           NLET KDPKIIQWMLTLH IG
Sbjct: 170 NLETVKDPKIIQWMLTLHQIG 190

[Close]

BLAST of MELO3C019228 vs. ExPASy TrEMBL
Match: A0A1S3CJA4 (TBC1 domain family member 17 OS=Cucumis melo OX=3656 GN=LOC103501604 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.1e-32
Identity = 70/81 (86.42%), Postives = 71/81 (87.65%), Query Frame = 0


Query: 1   MFTVVESGRYITAPVISEDDQPIHDPLVLLGINPDKGPAVPQDTGPIDGNLDGSRSTPNN 60
           MF VV SGRYITAPVI+ED QPIHDPLVLL  NPD GPAVPQDTGP DGN DGSRSTPNN
Sbjct: 110 MFPVVGSGRYITAPVITEDGQPIHDPLVLLETNPDNGPAVPQDTGPADGNPDGSRSTPNN 169

Query: 61  NLETAKDPKIIQWMLTLHHIG 82
           NLET KDPKIIQWMLTLH IG
Sbjct: 170 NLETVKDPKIIQWMLTLHQIG 190

[Close]

BLAST of MELO3C019228 vs. ExPASy TrEMBL
Match: A0A0A0L6C5 (Rab-GAP TBC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G078290 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 4.6e-31
Identity = 69/81 (85.19%), Postives = 70/81 (86.42%), Query Frame = 0


Query: 1   MFTVVESGRYITAPVISEDDQPIHDPLVLLGINPDKGPAVPQDTGPIDGNLDGSRSTPNN 60
           MF VV SGRYITAPVI+ED QPIHDPLVLL  NPDKGPAVPQDT   DGN DGSRSTPNN
Sbjct: 109 MFPVVGSGRYITAPVITEDGQPIHDPLVLLETNPDKGPAVPQDTSTADGNPDGSRSTPNN 168

Query: 61  NLETAKDPKIIQWMLTLHHIG 82
           NLET KDPKIIQWMLTLH IG
Sbjct: 169 NLETVKDPKIIQWMLTLHQIG 189

[Close]

BLAST of MELO3C019228 vs. TAIR 10
Match: AT4G27100.1 (Ypt/Rab-GAP domain of gyp1p superfamily protein )

HSP 1 Score: 60.8 bits (146), Expect = 5.7e-10
Identity = 36/81 (44.44%), Postives = 44/81 (54.32%), Query Frame = 0


Query: 1   MFTVVESGRYITAPVISEDDQPIHDPLVLLGINPDKGPAVPQDTGPIDGNLDGSRSTPNN 60
           MF V+ SGR+ TAPVI+E+ QP +DPLVL  IN             +  N +GS      
Sbjct: 110 MFPVIGSGRFTTAPVITENGQPNYDPLVLQEIN-------------LGTNSNGSVFFKEL 169

Query: 61  NLETAKDPKIIQWMLTLHHIG 82
                 D KIIQW+LTLH IG
Sbjct: 170 TSRGPLDKKIIQWLLTLHQIG 177

[Close]

BLAST of MELO3C019228 vs. TAIR 10
Match: AT4G27100.2 (Ypt/Rab-GAP domain of gyp1p superfamily protein )

HSP 1 Score: 60.8 bits (146), Expect = 5.7e-10
Identity = 36/81 (44.44%), Postives = 44/81 (54.32%), Query Frame = 0


Query: 1   MFTVVESGRYITAPVISEDDQPIHDPLVLLGINPDKGPAVPQDTGPIDGNLDGSRSTPNN 60
           MF V+ SGR+ TAPVI+E+ QP +DPLVL  IN             +  N +GS      
Sbjct: 110 MFPVIGSGRFTTAPVITENGQPNYDPLVLQEIN-------------LGTNSNGSVFFKEL 169

Query: 61  NLETAKDPKIIQWMLTLHHIG 82
                 D KIIQW+LTLH IG
Sbjct: 170 TSRGPLDKKIIQWLLTLHQIG 177

[Close]

BLAST of MELO3C019228 vs. TAIR 10
Match: AT5G54780.1 (Ypt/Rab-GAP domain of gyp1p superfamily protein )

HSP 1 Score: 53.1 bits (126), Expect = 1.2e-07
Identity = 34/83 (40.96%), Postives = 46/83 (55.42%), Query Frame = 0


Query: 1   MFTVVESGRYITAPVISEDDQPIHDPLVLLGINPDKGPAVPQDTGPIDGNLDGSRSTPNN 60
           MF V+ SG +ITAPVI+   +PI+DP+VL            Q+T     NL  + S    
Sbjct: 110 MFPVIGSGGFITAPVITNKGEPIYDPIVL------------QET-----NLGANGSDFFK 169

Query: 61  NLET--AKDPKIIQWMLTLHHIG 82
           +L +    D K+IQW+LTLH IG
Sbjct: 170 DLASRGPLDQKVIQWLLTLHQIG 175

The following BLAST results are available for this feature:

BLAST of MELO3C019228 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ98321.1	1.4e-37	97.50	TBC1 domain family member 17 [Cucumis melo var. makuwa]	[more]
KAA0032483.1	9.7e-36	95.00	TBC1 domain family member 17 [Cucumis melo var. makuwa]	[more]
XP_008463439.1	8.5e-32	86.42	PREDICTED: TBC1 domain family member 17 [Cucumis melo] >KAA0025500.1 TBC1 domain...	[more]
XP_004152917.1	9.4e-31	85.19	GTPase-activating protein gyp7 [Cucumis sativus] >KAE8650139.1 hypothetical prot...	[more]
XP_038906214.1	3.0e-29	83.95	GTPase-activating protein GYP7 [Benincasa hispida]	[more]

BLAST of MELO3C019228 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C019228 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BI26	6.6e-38	97.50	TBC1 domain family member 17 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7SQ27	4.7e-36	95.00	TBC1 domain family member 17 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5D3BM65	4.1e-32	86.42	TBC1 domain family member 17 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3CJA4	4.1e-32	86.42	TBC1 domain family member 17 OS=Cucumis melo OX=3656 GN=LOC103501604 PE=4 SV=1	[more]
A0A0A0L6C5	4.6e-31	85.19	Rab-GAP TBC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G078290...	[more]

BLAST of MELO3C019228 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G27100.1	5.7e-10	44.44	Ypt/Rab-GAP domain of gyp1p superfamily protein	[more]
AT4G27100.2	5.7e-10	44.44	Ypt/Rab-GAP domain of gyp1p superfamily protein	[more]
AT5G54780.1	1.2e-07	40.96	Ypt/Rab-GAP domain of gyp1p superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019228.1	MELO3C019228.1	mRNA