MELO3C019164 (gene) Melon (DHL92) v4

Overview


Name	MELO3C019164
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Unknown protein
Location	chr08: 13604600 .. 13606171 (-)
RNA-Seq Expression	MELO3C019164
Synteny	MELO3C019164

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATATTTTTTATATTTTCTACTGTAGGTACATGGGTTTTTTTTTCAATTTTTAAAATTGTTATATTTTTTTTTAAATCTCAATTTTATTTATTAAAAGTATATATAAGTTTAGTCTAGGCGTTTTTTTTAAGGCACTACCGCCGGTACCAGCCGCCTCCATTTCCATCACCTTCCCTCCATCTCTCTCATCTCGCATCTCCTCTTTCGGCTACTCTTCTTCCATCTATACGATCTCCGCCGCCACAACGGCCAATATCAATCGCCTCCTCTTCTTTTATCTCTCAAGACACTACCCAATATCAATCCTTCCCAACGTCAATCTAAAATCAAACTGGTACAAGGCATAAACTTGAAGAAATGAAAAATTGAAAGATCATAGAACTTCAATCTTACGAATTTGAAGAGGAGAGGGAAAAACTCCAGCAGGCGTACGAGAGCTGACTACGGAGGGCAGGCGGGAGGTTAGTACCGAAATTACTGAAATTTGAAAGATTTACTGAAATTAGGGTTGGGTCTAGTCTTATTAGAGAAATTATGATGAATCGGATTAGGTTGGGGGTTCATTTGTGCTATATGTAAATTCTGAATTTATTGTACAGAATGAATTTTCTTTTCTTAGGCTCAAACCATGAATTTTTGGCTTTGAGGAAAAAATGATATAATTTGATTTAAATATTGAAAGTTTTTAGAACTGGATTAAGCGTTTTTAGACCCAAGTTGTAATACCAAAATTCTTACATATTGGTCTGTTATAATTGCACTTTCTGAGGTTAATGTGAATGCTTTTCCCTCGTTTTTTGTATTAACTATTGGTCCGTTATAGTTTTCGAGAGTATATATCGATCTTTATATTATTCAATATATATGAATTTCATTGATGCTCTAAACTATCGTGTCCTTTGTGTGCTTCTGATCATGTCTTATTCTTTTTTTTGGAGAAACATAATTTAGCATATGTGCGTACCACATCTTATTGTTTTTAACTTTTAAGATGATTTCACTTTTTATGTGATCCTTGTGTTTCAGAAAATAGATGTTCAATGTTATTACTAGGCTATGTGATAGTTGTGATCAACTTATGGTTGATGGTTGTTTATTTATGCTAGATAACTTTTTCTCATTTAGCAGGTTAATTGGTGCAATGGGACGGAAGAAAACTGAAGAAGGTGGTGGAAACGCCAAAGCCAAGGCTGGTAAAGATGTTTCTGGGAAGAGAGAGAAGCTTCAGTGTCAGAAATGCTTGCCAGTATGGATCAGAAATCAGATAAACCGAGAAAAGGATCTTCATCGTTGGGTGGTGGTGCTAAACCTCAAGCAAAGGCTCCAAAAAAGGTTGCAGCTTACACTGATGGCATTGATCTCCCCCCCTCTGATGATGAGGAAGAAGAAATTGTGTCTGATGAGGAGCAACAGAGTACCAGTTCCCAGAAACGGCTACCGTGGCAGGACAGGGCTGAGTTGAAGCCTTTGGAGGTGGCTGTAAGTGATAAAGAGTTGAAGAAACGAGAGAGGAAAGATATGTTTGCTGCCCATGCTGCAGAACAGGCCAGACAAGAAGCTCTATAA

mRNA sequence

ATGGAGATATTTTTTATATTTTCTACTGTAGGTACATGGGCACTACCGCCGGTACCAGCCGCCTCCATTTCCATCACCTTCCCTCCATCTCTCTCATCTCGCATCTCCTCTTTCGGCTACTCTTCTTCCATCTATACGATCTCCGCCGCCACAACGGCCAATATCAATCGCCTCCTCTTCTTTTATCTCTCAAGACACTACCCAATATCAATCCTTCCCAACAGGAGAGGGAAAAACTCCAGCAGGCGTACGAGAGCTGACTACGGAGGGCAGGCGGGAGAAAATAGATGTTCAATGTTAATTGGTGCAATGGGACGGAAGAAAACTGAAGAAGGTGGTGGAAACGCCAAAGCCAAGGCTGGTAAAGATGTTTCTGGGAAGAGAGAGAAGCTTCAGTGTCAGAAATGCTTGCCAGTATGGATCAGAAATCAGATAAACCGAGAAAAGGATCTTCATCGTTGGGTGGTGGTGCTAAACCTCAAGCAAAGGCTCCAAAAAAGGTTGCAGCTTACACTGATGGCATTGATCTCCCCCCCTCTGATGATGAGGAAGAAGAAATTGTGTCTGATGAGGAGCAACAGAGTACCAGTTCCCAGAAACGGCTACCGTGGCAGGACAGGGCTGAGTTGAAGCCTTTGGAGGTGGCTGTAAGTGATAAAGAGTTGAAGAAACGAGAGAGGAAAGATATGTTTGCTGCCCATGCTGCAGAACAGGCCAGACAAGAAGCTCTATAA

Coding sequence (CDS)

ATGGAGATATTTTTTATATTTTCTACTGTAGGTACATGGGCACTACCGCCGGTACCAGCCGCCTCCATTTCCATCACCTTCCCTCCATCTCTCTCATCTCGCATCTCCTCTTTCGGCTACTCTTCTTCCATCTATACGATCTCCGCCGCCACAACGGCCAATATCAATCGCCTCCTCTTCTTTTATCTCTCAAGACACTACCCAATATCAATCCTTCCCAACAGGAGAGGGAAAAACTCCAGCAGGCGTACGAGAGCTGACTACGGAGGGCAGGCGGGAGAAAATAGATGTTCAATGTTAATTGGTGCAATGGGACGGAAGAAAACTGAAGAAGGTGGTGGAAACGCCAAAGCCAAGGCTGGTAAAGATGTTTCTGGGAAGAGAGAGAAGCTTCAGTGTCAGAAATGCTTGCCAGTATGGATCAGAAATCAGATAAACCGAGAAAAGGATCTTCATCGTTGGGTGGTGGTGCTAAACCTCAAGCAAAGGCTCCAAAAAAGGTTGCAGCTTACACTGATGGCATTGATCTCCCCCCCTCTGATGATGAGGAAGAAGAAATTGTGTCTGATGAGGAGCAACAGAGTACCAGTTCCCAGAAACGGCTACCGTGGCAGGACAGGGCTGAGTTGA

Protein sequence

MEIFFIFSTVGTWALPPVPAASISITFPPSLSSRISSFGYSSSIYTISAATTANINRLLFFYLSRHYPISILPNRRGKNSSRRTRADYGGQAGENRCSMLIGAMGRKKTEEGGGNAKAKAGKDVSGKREKLQCQKCLPVWIRNQINREKDLHRWVVVLNLKQRLQKRLQLTLMALISPPLMMRKKKLCLMRSNRVPVPRNGYRGRTGLS

Homology

[Close]

BLAST of MELO3C019164 vs. NCBI nr
Match: KAG7027450.1 (ABC transporter F family member 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 55.5 bits (132), Expect = 6.6e-04
Identity = 29/40 (72.50%), Postives = 30/40 (75.00%), Query Frame = 0


Query: 98  SMLIGAMGRKKTEEGGGNAKAKAGKDVSGKREKLQCQKCL 138
           S LIGAMGRKK EE GGN K K GKDVSGKREKL   + L
Sbjct: 65  SRLIGAMGRKKIEEAGGNTKVKPGKDVSGKREKLSVSEML 104

[Close]

BLAST of MELO3C019164 vs. NCBI nr
Match: KAG6595451.1 (ABC transporter F family member 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 55.5 bits (132), Expect = 6.6e-04
Identity = 29/40 (72.50%), Postives = 30/40 (75.00%), Query Frame = 0


Query: 98  SMLIGAMGRKKTEEGGGNAKAKAGKDVSGKREKLQCQKCL 138
           S LIGAMGRKK EE GGN K K GKDVSGKREKL   + L
Sbjct: 308 SRLIGAMGRKKIEEAGGNTKVKPGKDVSGKREKLSVSEML 347

The following BLAST results are available for this feature:

BLAST of MELO3C019164 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7027450.1	6.6e-04	72.50	ABC transporter F family member 4, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6595451.1	6.6e-04	72.50	ABC transporter F family member 4, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MELO3C019164 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C019164 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C019164 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019164.1	MELO3C019164.1	mRNA