MELO3C019134.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C019134.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionCell division protein ftsH
Locationchr08: 12741644 .. 12741963 (+)
RNA-Seq ExpressionMELO3C019134.jh1
SyntenyMELO3C019134.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTAGAAGAAGCAAAAGATGCCTTGGATCAAGGCTAAACAAGATTAAATCTAACGAGGATAATCCTATTATGAATGAAGATAATACAGAGGTATACTTTATAGTTACTGAATTAAAATTCTATATTGTATATATAGTTAAACAAATGTTTAAAATGTGTATATATCGTAGGAGGACATAAGAAATGAAGAACCACTGGAATACGAACCAATAAAAACAATTTATCCTGATGATGATGAAGAAGAATTACAAGGGCTGACAGGTACACAGATTGTGTTGTACAATGATCAAAATTTTATGAGAATGGATATTGTTTTT

mRNA sequence

ATGGTTAGAAGAAGCAAAAGATGCCTTGGATCAAGGCTAAACAAGATTAAATCTAACGAGGATAATCCTATTATGAATGAAGATAATACAGAGGAGGACATAAGAAATGAAGAACCACTGGAATACGAACCAATAAAAACAATTTATCCTGATGATGATGAAGAAGAATTACAAGGGCTGACAGGTACACAGATTGTGTTGTACAATGATCAAAATTTTATGAGAATGGATATTGTTTTT

Coding sequence (CDS)

ATGGTTAGAAGAAGCAAAAGATGCCTTGGATCAAGGCTAAACAAGATTAAATCTAACGAGGATAATCCTATTATGAATGAAGATAATACAGAGGAGGACATAAGAAATGAAGAACCACTGGAATACGAACCAATAAAAACAATTTATCCTGATGATGATGAAGAAGAATTACAAGGGCTGACAGGTACACAGATTGTGTTGTACAATGATCAAAATTTTATGAGAATGGATATTGTTTTT

Protein sequence

MVRRSKRCLGSRLNKIKSNEDNPIMNEDNTEEDIRNEEPLEYEPIKTIYPDDDEEELQGLTGTQIVLYNDQNFMRMDIVF
Homology
BLAST of MELO3C019134.jh1 vs. NCBI nr
Match: TYK30586.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (298), Expect = 1.73e-30
Identity = 60/80 (75.00%), Postives = 71/80 (88.75%), Query Frame = 0

Query: 1  MVRRSKRCLGSRLNKIKSNEDNPIMNEDNTEEDIRNEEPLEYEPIKTIYPDDDEEELQGL 60
          MVRRS+RCLGSRL KIKS++DN I+ EDN EEDIRNEEPL+Y+PI+ IYP DDEEELQG 
Sbjct: 1  MVRRSERCLGSRLKKIKSSKDNSILIEDNVEEDIRNEEPLDYQPIQIIYPKDDEEELQGP 60

Query: 61 TGTQIVLYNDQNFMRMDIVF 80
          TGTQIV+Y+D+ FMR D+VF
Sbjct: 61 TGTQIVVYDDKKFMRTDMVF 80

BLAST of MELO3C019134.jh1 vs. NCBI nr
Match: KAA0043162.1 (uncharacterized protein E6C27_scaffold110G00260 [Cucumis melo var. makuwa] >TYK12303.1 uncharacterized protein E5676_scaffold302G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 2.09e-24
Identity = 48/80 (60.00%), Postives = 68/80 (85.00%), Query Frame = 0

Query: 1  MVRRSKRCLGSRLNKIKSNEDNPIMNEDNTEEDIRNEEPLEYEPIKTIYPDDDEEELQGL 60
          MVRRS+RCLG +L  IKSN+D+PI+ +DNTEE++R EEP++YEP++TIY DDDE+EL+G 
Sbjct: 1  MVRRSERCLGLQLKIIKSNKDDPIVIKDNTEEEVRYEEPIQYEPLQTIYLDDDEQELRGP 60

Query: 61 TGTQIVLYNDQNFMRMDIVF 80
          T T IV+Y +Q F++ ++VF
Sbjct: 61 TDTLIVVYQNQKFVKTNVVF 80

BLAST of MELO3C019134.jh1 vs. NCBI nr
Match: XP_008464749.1 (PREDICTED: uncharacterized protein LOC103502558 isoform X2 [Cucumis melo])

HSP 1 Score: 76.3 bits (186), Expect = 3.21e-15
Identity = 38/53 (71.70%), Postives = 46/53 (86.79%), Query Frame = 0

Query: 11  SRLNKIKSNEDNPIMNEDNTEEDIRNEEPLEYEPIKTIYPDDDEEELQGLTGT 63
           ++L KIKS++DN I+ EDN EEDIRNEEPL+Y+PI+TIYP DDEEELQG T T
Sbjct: 108 NKLKKIKSSKDNSILIEDNEEEDIRNEEPLDYQPIQTIYPKDDEEELQGTTDT 160

BLAST of MELO3C019134.jh1 vs. NCBI nr
Match: KAA0066916.1 (Cell division protein ftsH [Cucumis melo var. makuwa] >TYK30198.1 Cell division protein ftsH [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 3.75e-10
Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 0

Query: 1  MVRRSKRCLGSRLNKIKSNEDNPIMNEDNTEEDIRNEEPLEYEPIKTIYPDDDEEELQGL 60
          MVR+S RCLGSR+  +KSN+D+PIM  D              E   T+Y  DDE EL+G 
Sbjct: 1  MVRKSGRCLGSRMKHMKSNKDDPIMINDT-------------EVCGTVYKGDDEYELRGP 60

Query: 61 TGTQIVLYNDQNFMRMDIVF 80
          T TQI+LY ++ +++ D+VF
Sbjct: 61 TCTQIMLYEEKKYVKPDVVF 67

BLAST of MELO3C019134.jh1 vs. NCBI nr
Match: KAA0035692.1 (Cell division protein ftsH [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 1.74e-08
Identity = 26/53 (49.06%), Postives = 41/53 (77.36%), Query Frame = 0

Query: 28 DNTEEDIRNEEPLEYEPIKTIYPDDDEEELQGLTGTQIVLYNDQNFMRMDIVF 80
          D+ E++ R EE + YEP++ +YP+D E EL+G TGTQIVLY ++ +++ D+VF
Sbjct: 3  DDIEDEERYEEAINYEPLQAVYPNDGEHELRGPTGTQIVLYEEKKYVKPDVVF 55

BLAST of MELO3C019134.jh1 vs. ExPASy TrEMBL
Match: A0A5D3E3X1 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold974G00070 PE=4 SV=1)

HSP 1 Score: 119 bits (298), Expect = 8.40e-31
Identity = 60/80 (75.00%), Postives = 71/80 (88.75%), Query Frame = 0

Query: 1  MVRRSKRCLGSRLNKIKSNEDNPIMNEDNTEEDIRNEEPLEYEPIKTIYPDDDEEELQGL 60
          MVRRS+RCLGSRL KIKS++DN I+ EDN EEDIRNEEPL+Y+PI+ IYP DDEEELQG 
Sbjct: 1  MVRRSERCLGSRLKKIKSSKDNSILIEDNVEEDIRNEEPLDYQPIQIIYPKDDEEELQGP 60

Query: 61 TGTQIVLYNDQNFMRMDIVF 80
          TGTQIV+Y+D+ FMR D+VF
Sbjct: 61 TGTQIVVYDDKKFMRTDMVF 80

BLAST of MELO3C019134.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TIM3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00690 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.01e-24
Identity = 48/80 (60.00%), Postives = 68/80 (85.00%), Query Frame = 0

Query: 1  MVRRSKRCLGSRLNKIKSNEDNPIMNEDNTEEDIRNEEPLEYEPIKTIYPDDDEEELQGL 60
          MVRRS+RCLG +L  IKSN+D+PI+ +DNTEE++R EEP++YEP++TIY DDDE+EL+G 
Sbjct: 1  MVRRSERCLGLQLKIIKSNKDDPIVIKDNTEEEVRYEEPIQYEPLQTIYLDDDEQELRGP 60

Query: 61 TGTQIVLYNDQNFMRMDIVF 80
          T T IV+Y +Q F++ ++VF
Sbjct: 61 TDTLIVVYQNQKFVKTNVVF 80

BLAST of MELO3C019134.jh1 vs. ExPASy TrEMBL
Match: A0A1S3CM64 (uncharacterized protein LOC103502558 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502558 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.55e-15
Identity = 38/53 (71.70%), Postives = 46/53 (86.79%), Query Frame = 0

Query: 11  SRLNKIKSNEDNPIMNEDNTEEDIRNEEPLEYEPIKTIYPDDDEEELQGLTGT 63
           ++L KIKS++DN I+ EDN EEDIRNEEPL+Y+PI+TIYP DDEEELQG T T
Sbjct: 108 NKLKKIKSSKDNSILIEDNEEEDIRNEEPLDYQPIQTIYPKDDEEELQGTTDT 160

BLAST of MELO3C019134.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VKG5 (Cell division protein ftsH OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold595G00090 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.81e-10
Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 0

Query: 1  MVRRSKRCLGSRLNKIKSNEDNPIMNEDNTEEDIRNEEPLEYEPIKTIYPDDDEEELQGL 60
          MVR+S RCLGSR+  +KSN+D+PIM  D              E   T+Y  DDE EL+G 
Sbjct: 1  MVRKSGRCLGSRMKHMKSNKDDPIMINDT-------------EVCGTVYKGDDEYELRGP 60

Query: 61 TGTQIVLYNDQNFMRMDIVF 80
          T TQI+LY ++ +++ D+VF
Sbjct: 61 TCTQIMLYEEKKYVKPDVVF 67

BLAST of MELO3C019134.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SWP5 (Cell division protein ftsH OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G003940 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 8.42e-09
Identity = 26/53 (49.06%), Postives = 41/53 (77.36%), Query Frame = 0

Query: 28 DNTEEDIRNEEPLEYEPIKTIYPDDDEEELQGLTGTQIVLYNDQNFMRMDIVF 80
          D+ E++ R EE + YEP++ +YP+D E EL+G TGTQIVLY ++ +++ D+VF
Sbjct: 3  DDIEDEERYEEAINYEPLQAVYPNDGEHELRGPTGTQIVLYEEKKYVKPDVVF 55

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK30586.11.73e-3075.00protein Ycf2-like [Cucumis melo var. makuwa][more]
KAA0043162.12.09e-2460.00uncharacterized protein E6C27_scaffold110G00260 [Cucumis melo var. makuwa] >TYK1... [more]
XP_008464749.13.21e-1571.70PREDICTED: uncharacterized protein LOC103502558 isoform X2 [Cucumis melo][more]
KAA0066916.13.75e-1045.00Cell division protein ftsH [Cucumis melo var. makuwa] >TYK30198.1 Cell division ... [more]
KAA0035692.11.74e-0849.06Cell division protein ftsH [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3E3X18.40e-3175.00Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold974G00... [more]
A0A5A7TIM31.01e-2460.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3CM641.55e-1571.70uncharacterized protein LOC103502558 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A5A7VKG51.81e-1045.00Cell division protein ftsH OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... [more]
A0A5A7SWP58.42e-0949.06Cell division protein ftsH OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C019134.jh1.t1MELO3C019134.jh1.t1mRNA