Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TACGACAAGTTCTTCAAGAGCACCTAAACACATTTGGACCAATAAGGAAGAAGCCAAACTTGTTGAGTGTTTGGTGAAGTTAGTCTCCTCTAATGGATGGAGATCCGATAACGGTACCTTCAGACTTGGGTACCTCGCACAAGTGCAACGGATGATGGCAGAGAAGCTCTCGGGCTGTAACATCCAAGGGGTTCCAATAATACACTGTCAGATCAAAGCCCTTAAGAGAATCTATCAAGCAATAGTAGAAATACGAGGGCAACATGCAATGGATTTGGTTGGAACGATGTATACCAGTGCATACGCAAGGTATTCGACAGCTGGGTGAAGGTATGTATCTCATGATGAACGTTTTACGTCTAGAATCCTAATCAACGACTAATATATTGAAATGTTTCTACAGAGTCATCCTGCAGCCAAGGGCCTCCTCAACAAAACATTTCCTTATTACGATGACATGACGTATGTTTTTGGGAAAGATCGGGCTATGGAAGGACGATCAGAGACCTTCGCTGGTGTAGGATCTAATGTACCTTGGGATTCAATGGTTTTCCCATTATTCGAAGATCCCGACGATGTATAG
mRNA sequence
TACGACAAGTTCTTCAAGAGCACCTAAACACATTTGGACCAATAAGGAAGAAGCCAAACTTGTTGAGTGTTTGGTGAAGTTAGTCTCCTCTAATGGATGGAGATCCGATAACGGTACCTTCAGACTTGGGTACCTCGCACAAGTGCAACGGATGATGGCAGAGAAGCTCTCGGGCTGTAACATCCAAGGGGTTCCAATAATACACTGTCAGATCAAAGCCCTTAAGAGAATCTATCAAGCAATAGTAGAAATACGAGGGCAACATGCAATGGATTTGAGTCATCCTGCAGCCAAGGGCCTCCTCAACAAAACATTTCCTTATTACGATGACATGACGTATGTTTTTGGGAAAGATCGGGCTATGGAAGGACGATCAGAGACCTTCGCTGGTGTAGGATCTAATGTACCTTGGGATTCAATGGTTTTCCCATTATTCGAAGATCCCGACGATGTATAG
Coding sequence (CDS)
ACGACAAGTTCTTCAAGAGCACCTAAACACATTTGGACCAATAAGGAAGAAGCCAAACTTGTTGAGTGTTTGGTGAAGTTAGTCTCCTCTAATGGATGGAGATCCGATAACGGTACCTTCAGACTTGGGTACCTCGCACAAGTGCAACGGATGATGGCAGAGAAGCTCTCGGGCTGTAACATCCAAGGGGTTCCAATAATACACTGTCAGATCAAAGCCCTTAAGAGAATCTATCAAGCAATAGTAGAAATACGAGGGCAACATGCAATGGATTTGAGTCATCCTGCAGCCAAGGGCCTCCTCAACAAAACATTTCCTTATTACGATGACATGACGTATGTTTTTGGGAAAGATCGGGCTATGGAAGGACGATCAGAGACCTTCGCTGGTGTAGGATCTAATGTACCTTGGGATTCAATGGTTTTCCCATTATTCGAAGATCCCGACGATGTATAG
Protein sequence
TTSSSRAPKHIWTNKEEAKLVECLVKLVSSNGWRSDNGTFRLGYLAQVQRMMAEKLSGCNIQGVPIIHCQIKALKRIYQAIVEIRGQHAMDLSHPAAKGLLNKTFPYYDDMTYVFGKDRAMEGRSETFAGVGSNVPWDSMVFPLFEDPDDV
Homology
BLAST of MELO3C019088 vs. NCBI nr
Match:
KAA0025948.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 309.3 bits (791), Expect = 1.8e-80
Identity = 151/161 (93.79%), Postives = 151/161 (93.79%), Query Frame = 0
Query: 1 TTSSSRAPKHIWTNKEEAKLVECLVKLVSSNGWRSDNGTFRLGYLAQVQRMMAEKLSGCN 60
TTSSSRAPKHIWTNKEEAKLVECLVKLVSSNGWRSDNGTFRLGYLAQVQRMMAEKLSGCN
Sbjct: 46 TTSSSRAPKHIWTNKEEAKLVECLVKLVSSNGWRSDNGTFRLGYLAQVQRMMAEKLSGCN 105
Query: 61 IQGVPIIHCQIKALKRIYQAIVEIRGQHAMDL----------SHPAAKGLLNKTFPYYDD 120
IQGVPIIHCQIKALKRIYQAIVEIRGQHAMDL SHPAAKGLLNKTFPYYDD
Sbjct: 106 IQGVPIIHCQIKALKRIYQAIVEIRGQHAMDLVGTMYTSAYASHPAAKGLLNKTFPYYDD 165
Query: 121 MTYVFGKDRAMEGRSETFAGVGSNVPWDSMVFPLFEDPDDV 152
MTYVFGKDRAMEGRSETFAGVGSNVPWDSMVFPLFEDPDDV
Sbjct: 166 MTYVFGKDRAMEGRSETFAGVGSNVPWDSMVFPLFEDPDDV 206
BLAST of MELO3C019088 vs. NCBI nr
Match:
TYK19767.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 243.4 bits (620), Expect = 1.2e-60
Identity = 121/151 (80.13%), Postives = 121/151 (80.13%), Query Frame = 0
Query: 1 TTSSSRAPKHIWTNKEEAKLVECLVKLVSSNGWRSDNGTFRLGYLAQVQRMMAEKLSGCN 60
TTSSSRAPKHIWTNKEEAKLVECLVKLVSSNGWRSDNGTFRLGYLAQVQRMMAEKLSGCN
Sbjct: 39 TTSSSRAPKHIWTNKEEAKLVECLVKLVSSNGWRSDNGTFRLGYLAQVQRMMAEKLSGCN 98
Query: 61 IQGVPIIHCQIKALKRIYQAIVEIRGQHAMDLSHPAAKGLLNKTFPYYDDMTYVFGKDRA 120
IQG SHPAAKGLLNKTFPYYDDMTYVFGKDR
Sbjct: 99 IQG-----------------------------SHPAAKGLLNKTFPYYDDMTYVFGKDRT 158
Query: 121 MEGRSETFAGVGSNVPWDSMVFPLFEDPDDV 152
MEGRSETFAGVGSNVPWDSMVFPLFEDPDDV
Sbjct: 159 MEGRSETFAGVGSNVPWDSMVFPLFEDPDDV 160
BLAST of MELO3C019088 vs. NCBI nr
Match:
XP_031742657.1 (uncharacterized protein LOC116404426 [Cucumis sativus] >XP_031742658.1 uncharacterized protein LOC116404426 [Cucumis sativus] >XP_031742659.1 uncharacterized protein LOC116404426 [Cucumis sativus])
HSP 1 Score: 183.3 bits (464), Expect = 1.5e-42
Identity = 95/169 (56.21%), Postives = 106/169 (62.72%), Query Frame = 0
Query: 2 TSSSRAPKHIWTNKEEAKLVECLVKLVSSNGWRSDNGTFRLGYLAQVQRMMAEKLSGCNI 61
TSSSRAPKH+WT +EEA LVEC+VKLVS+ W+SDNGTFR GYLAQ+ RMM KL GCN+
Sbjct: 2 TSSSRAPKHVWTKEEEATLVECMVKLVSAGRWKSDNGTFRPGYLAQLLRMMVVKLPGCNV 61
Query: 62 QGVPIIHCQIKALKRIYQAIVEIRGQHAMDL---------------------SHPAAKGL 121
+I +IK LKR YQAI E+RG SHPAAKGL
Sbjct: 62 HATTVIDYRIKTLKRSYQAIAEMRGPSCSGFGWNDDAKCIIAEKEFFDNWVRSHPAAKGL 121
Query: 122 LNKTFPYYDDMTYVFGKDRAMEGRSETFAGVGSNVPWDSMVFPLFEDPD 150
LNK FPYYD YVFGKDRAM ETFA VGSNVP FP + D
Sbjct: 122 LNKPFPYYDKFAYVFGKDRAMGAHVETFADVGSNVPPGFEEFPPVDQND 170
BLAST of MELO3C019088 vs. NCBI nr
Match:
XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 181.8 bits (460), Expect = 4.4e-42
Identity = 94/154 (61.04%), Postives = 106/154 (68.83%), Query Frame = 0
Query: 3 SSSRAPKHIWTNKEEAKLVECLVKLVSSNGWRSDNGTFRLGYLAQVQRMMAEKLSGCNIQ 62
S SRAPKH WT +EE K VECLV+LVSS GWRSDNGTF+ GYLAQ+QRMMAEKL G NIQ
Sbjct: 3 SLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTNIQ 62
Query: 63 GVPIIHCQIKALKRIYQAIVEIRGQHA---------------MDL------SHPAAKGLL 122
I C +K+LK+ Y AI E+RG DL SHPAAKGLL
Sbjct: 63 ESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLL 122
Query: 123 NKTFPYYDDMTYVFGKDRAMEGRSETFAGVGSNV 136
+K+FPYYDD++YVFGKDRA RSETF VGSNV
Sbjct: 123 HKSFPYYDDLSYVFGKDRATGARSETFPNVGSNV 156
BLAST of MELO3C019088 vs. NCBI nr
Match:
KAA0041588.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 181.0 bits (458), Expect = 7.5e-42
Identity = 87/156 (55.77%), Postives = 108/156 (69.23%), Query Frame = 0
Query: 2 TSSSRAPKHIWTNKEEAKLVECLVKLVSSNGWRSDNGTFRLGYLAQVQRMMAEKLSGCNI 61
++S+RAP+H+WT +EE LVECL++LVS GW+SDNGTFR GYLAQ+ RMMAEKL GC +
Sbjct: 2 STSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQV 61
Query: 62 QGVPIIHCQIKALKRIYQAIVEIRGQHAMDL---------------------SHPAAKGL 121
+ +I C+IK LKR +QAIVE+RG SHPAAKGL
Sbjct: 62 RATTVIDCRIKTLKRTFQAIVEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGL 121
Query: 122 LNKTFPYYDDMTYVFGKDRAMEGRSETFAGVGSNVP 137
LNK FPYYD++TYVFG+DRA + +ETFA VGSN P
Sbjct: 122 LNKPFPYYDELTYVFGRDRATDRFAETFADVGSNEP 157
BLAST of MELO3C019088 vs. ExPASy TrEMBL
Match:
A0A5A7SIE9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002540 PE=4 SV=1)
HSP 1 Score: 309.3 bits (791), Expect = 8.8e-81
Identity = 151/161 (93.79%), Postives = 151/161 (93.79%), Query Frame = 0
Query: 1 TTSSSRAPKHIWTNKEEAKLVECLVKLVSSNGWRSDNGTFRLGYLAQVQRMMAEKLSGCN 60
TTSSSRAPKHIWTNKEEAKLVECLVKLVSSNGWRSDNGTFRLGYLAQVQRMMAEKLSGCN
Sbjct: 46 TTSSSRAPKHIWTNKEEAKLVECLVKLVSSNGWRSDNGTFRLGYLAQVQRMMAEKLSGCN 105
Query: 61 IQGVPIIHCQIKALKRIYQAIVEIRGQHAMDL----------SHPAAKGLLNKTFPYYDD 120
IQGVPIIHCQIKALKRIYQAIVEIRGQHAMDL SHPAAKGLLNKTFPYYDD
Sbjct: 106 IQGVPIIHCQIKALKRIYQAIVEIRGQHAMDLVGTMYTSAYASHPAAKGLLNKTFPYYDD 165
Query: 121 MTYVFGKDRAMEGRSETFAGVGSNVPWDSMVFPLFEDPDDV 152
MTYVFGKDRAMEGRSETFAGVGSNVPWDSMVFPLFEDPDDV
Sbjct: 166 MTYVFGKDRAMEGRSETFAGVGSNVPWDSMVFPLFEDPDDV 206
BLAST of MELO3C019088 vs. ExPASy TrEMBL
Match:
A0A5D3D879 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1676G00020 PE=4 SV=1)
HSP 1 Score: 243.4 bits (620), Expect = 6.0e-61
Identity = 121/151 (80.13%), Postives = 121/151 (80.13%), Query Frame = 0
Query: 1 TTSSSRAPKHIWTNKEEAKLVECLVKLVSSNGWRSDNGTFRLGYLAQVQRMMAEKLSGCN 60
TTSSSRAPKHIWTNKEEAKLVECLVKLVSSNGWRSDNGTFRLGYLAQVQRMMAEKLSGCN
Sbjct: 39 TTSSSRAPKHIWTNKEEAKLVECLVKLVSSNGWRSDNGTFRLGYLAQVQRMMAEKLSGCN 98
Query: 61 IQGVPIIHCQIKALKRIYQAIVEIRGQHAMDLSHPAAKGLLNKTFPYYDDMTYVFGKDRA 120
IQG SHPAAKGLLNKTFPYYDDMTYVFGKDR
Sbjct: 99 IQG-----------------------------SHPAAKGLLNKTFPYYDDMTYVFGKDRT 158
Query: 121 MEGRSETFAGVGSNVPWDSMVFPLFEDPDDV 152
MEGRSETFAGVGSNVPWDSMVFPLFEDPDDV
Sbjct: 159 MEGRSETFAGVGSNVPWDSMVFPLFEDPDDV 160
BLAST of MELO3C019088 vs. ExPASy TrEMBL
Match:
A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)
HSP 1 Score: 181.8 bits (460), Expect = 2.1e-42
Identity = 94/154 (61.04%), Postives = 106/154 (68.83%), Query Frame = 0
Query: 3 SSSRAPKHIWTNKEEAKLVECLVKLVSSNGWRSDNGTFRLGYLAQVQRMMAEKLSGCNIQ 62
S SRAPKH WT +EE K VECLV+LVSS GWRSDNGTF+ GYLAQ+QRMMAEKL G NIQ
Sbjct: 3 SLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTNIQ 62
Query: 63 GVPIIHCQIKALKRIYQAIVEIRGQHA---------------MDL------SHPAAKGLL 122
I C +K+LK+ Y AI E+RG DL SHPAAKGLL
Sbjct: 63 ESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLL 122
Query: 123 NKTFPYYDDMTYVFGKDRAMEGRSETFAGVGSNV 136
+K+FPYYDD++YVFGKDRA RSETF VGSNV
Sbjct: 123 HKSFPYYDDLSYVFGKDRATGARSETFPNVGSNV 156
BLAST of MELO3C019088 vs. ExPASy TrEMBL
Match:
A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)
HSP 1 Score: 181.8 bits (460), Expect = 2.1e-42
Identity = 94/154 (61.04%), Postives = 106/154 (68.83%), Query Frame = 0
Query: 3 SSSRAPKHIWTNKEEAKLVECLVKLVSSNGWRSDNGTFRLGYLAQVQRMMAEKLSGCNIQ 62
S SRAPKH WT +EE K VECLV+LVSS GWRSDNGTF+ GYLAQ+QRMMAEKL G NIQ
Sbjct: 3 SLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTNIQ 62
Query: 63 GVPIIHCQIKALKRIYQAIVEIRGQHA---------------MDL------SHPAAKGLL 122
I C +K+LK+ Y AI E+RG DL SHPAAKGLL
Sbjct: 63 ESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLL 122
Query: 123 NKTFPYYDDMTYVFGKDRAMEGRSETFAGVGSNV 136
+K+FPYYDD++YVFGKDRA RSETF VGSNV
Sbjct: 123 HKSFPYYDDLSYVFGKDRATGARSETFPNVGSNV 156
BLAST of MELO3C019088 vs. ExPASy TrEMBL
Match:
A0A5A7TFA4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold93G00550 PE=4 SV=1)
HSP 1 Score: 181.0 bits (458), Expect = 3.6e-42
Identity = 87/156 (55.77%), Postives = 108/156 (69.23%), Query Frame = 0
Query: 2 TSSSRAPKHIWTNKEEAKLVECLVKLVSSNGWRSDNGTFRLGYLAQVQRMMAEKLSGCNI 61
++S+RAP+H+WT +EE LVECL++LVS GW+SDNGTFR GYLAQ+ RMMAEKL GC +
Sbjct: 2 STSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQV 61
Query: 62 QGVPIIHCQIKALKRIYQAIVEIRGQHAMDL---------------------SHPAAKGL 121
+ +I C+IK LKR +QAIVE+RG SHPAAKGL
Sbjct: 62 RATTVIDCRIKTLKRTFQAIVEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGL 121
Query: 122 LNKTFPYYDDMTYVFGKDRAMEGRSETFAGVGSNVP 137
LNK FPYYD++TYVFG+DRA + +ETFA VGSN P
Sbjct: 122 LNKPFPYYDELTYVFGRDRATDRFAETFADVGSNEP 157
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0025948.1 | 1.8e-80 | 93.79 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| TYK19767.1 | 1.2e-60 | 80.13 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| XP_031742657.1 | 1.5e-42 | 56.21 | uncharacterized protein LOC116404426 [Cucumis sativus] >XP_031742658.1 uncharact... | [more] |
| XP_008441954.1 | 4.4e-42 | 61.04 | PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret... | [more] |
| KAA0041588.1 | 7.5e-42 | 55.77 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7SIE9 | 8.8e-81 | 93.79 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5D3D879 | 6.0e-61 | 80.13 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5A7U0H7 | 2.1e-42 | 61.04 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A1S3B4L3 | 2.1e-42 | 61.04 | uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... | [more] |
| A0A5A7TFA4 | 3.6e-42 | 55.77 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
