MELO3C019076.jh1 (gene) Melon (Harukei-3) v1.41
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidestart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.CCCTAAAAAACCCTTTTCCCCCTTCCAAAATGGACGCCGGCGCCGCCACCGGAAACAACCCCCGAACTCTCGACGCCGTTTACCGGCGTAAACCTGCCAAGAAAACAAAACAATCCAACAAGAAATTAAAAAAACCCATCAAAGTTGTGTACATATCCAACCCCATGAAAGTTCAAACCAGTGCTTCTGAATTCATGGCTTTGGTCCAAGAACTCACCGGCCAAGACGCTGACTTTCCTGACCCCTCTAAACTCCCCCCATCCGCGGTATGCGACGACGCCGCCTCCACCGACCAACTCTACAACACGGTATCAGGTGGCGGTGACGACGACGGTGCTAGTAATCTTATTGTGAATAGTAACAACCCTTCACTTGTTGACGACGTGCCGGCGGAGGACGACATTCTCGGTAGCTTTTATGACGACTTTGACGACTTGATTTTTCCTCCTCCGGTAATGGGAAACTTATCTGGGTTGCTTCCGGGTCCCGTGGCAGCGGTTGTCTATGAATCTAATGCAAGGTGAAAATATTTTTTGATATTATAATGTGTGAAAGAT CCCTAAAAAACCCTTTTCCCCCTTCCAAAATGGACGCCGGCGCCGCCACCGGAAACAACCCCCGAACTCTCGACGCCGTTTACCGGCGTAAACCTGCCAAGAAAACAAAACAATCCAACAAGAAATTAAAAAAACCCATCAAAGTTGTGTACATATCCAACCCCATGAAAGTTCAAACCAGTGCTTCTGAATTCATGGCTTTGGTCCAAGAACTCACCGGCCAAGACGCTGACTTTCCTGACCCCTCTAAACTCCCCCCATCCGCGGTATGCGACGACGCCGCCTCCACCGACCAACTCTACAACACGGTATCAGGTGGCGGTGACGACGACGGTGCTAGTAATCTTATTGTGAATAGTAACAACCCTTCACTTGTTGACGACGTGCCGGCGGAGGACGACATTCTCGGTAGCTTTTATGACGACTTTGACGACTTGATTTTTCCTCCTCCGGTAATGGGAAACTTATCTGGGTTGCTTCCGGGTCCCGTGGCAGCGGTTGTCTATGAATCTAATGCAAGGTGAAAATATTTTTTGATATTATAATGTGTGAAAGAT ATGGACGCCGGCGCCGCCACCGGAAACAACCCCCGAACTCTCGACGCCGTTTACCGGCGTAAACCTGCCAAGAAAACAAAACAATCCAACAAGAAATTAAAAAAACCCATCAAAGTTGTGTACATATCCAACCCCATGAAAGTTCAAACCAGTGCTTCTGAATTCATGGCTTTGGTCCAAGAACTCACCGGCCAAGACGCTGACTTTCCTGACCCCTCTAAACTCCCCCCATCCGCGGTATGCGACGACGCCGCCTCCACCGACCAACTCTACAACACGGTATCAGGTGGCGGTGACGACGACGGTGCTAGTAATCTTATTGTGAATAGTAACAACCCTTCACTTGTTGACGACGTGCCGGCGGAGGACGACATTCTCGGTAGCTTTTATGACGACTTTGACGACTTGATTTTTCCTCCTCCGGTAATGGGAAACTTATCTGGGTTGCTTCCGGGTCCCGTGGCAGCGGTTGTCTATGAATCTAATGCAAGGTGA MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR Homology
BLAST of MELO3C019076.jh1 vs. NCBI nr
Match: TYK04210.1 (sigma factor binding protein 2 [Cucumis melo var. makuwa]) HSP 1 Score: 320 bits (821), Expect = 3.07e-110 Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0
BLAST of MELO3C019076.jh1 vs. NCBI nr
Match: KAA0025974.1 (sigma factor binding protein 2 [Cucumis melo var. makuwa]) HSP 1 Score: 318 bits (814), Expect = 3.59e-109 Identity = 162/164 (98.78%), Postives = 163/164 (99.39%), Query Frame = 0
BLAST of MELO3C019076.jh1 vs. NCBI nr
Match: XP_008455708.1 (PREDICTED: sigma factor binding protein 2, chloroplastic [Cucumis melo]) HSP 1 Score: 318 bits (814), Expect = 6.95e-109 Identity = 162/164 (98.78%), Postives = 163/164 (99.39%), Query Frame = 0
BLAST of MELO3C019076.jh1 vs. NCBI nr
Match: XP_011653858.1 (sigma factor binding protein 2, chloroplastic [Cucumis sativus]) HSP 1 Score: 277 bits (709), Expect = 3.66e-93 Identity = 142/164 (86.59%), Postives = 150/164 (91.46%), Query Frame = 0
BLAST of MELO3C019076.jh1 vs. NCBI nr
Match: KAE8649682.1 (hypothetical protein Csa_012221 [Cucumis sativus]) HSP 1 Score: 277 bits (709), Expect = 5.51e-93 Identity = 142/164 (86.59%), Postives = 150/164 (91.46%), Query Frame = 0
BLAST of MELO3C019076.jh1 vs. ExPASy Swiss-Prot
Match: Q9LDH1 (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB1 PE=1 SV=1) HSP 1 Score: 55.5 bits (132), Expect = 6.8e-07 Identity = 41/86 (47.67%), Postives = 56/86 (65.12%), Query Frame = 0
BLAST of MELO3C019076.jh1 vs. ExPASy Swiss-Prot
Match: O80669 (Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB2 PE=1 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 2.0e-06 Identity = 48/141 (34.04%), Postives = 66/141 (46.81%), Query Frame = 0
BLAST of MELO3C019076.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BYM2 (Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24967G00110 PE=4 SV=1) HSP 1 Score: 320 bits (821), Expect = 1.49e-110 Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0
BLAST of MELO3C019076.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SJV9 (Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002890 PE=4 SV=1) HSP 1 Score: 318 bits (814), Expect = 1.74e-109 Identity = 162/164 (98.78%), Postives = 163/164 (99.39%), Query Frame = 0
BLAST of MELO3C019076.jh1 vs. ExPASy TrEMBL
Match: A0A1S3C276 (sigma factor binding protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495816 PE=4 SV=1) HSP 1 Score: 318 bits (814), Expect = 3.37e-109 Identity = 162/164 (98.78%), Postives = 163/164 (99.39%), Query Frame = 0
BLAST of MELO3C019076.jh1 vs. ExPASy TrEMBL
Match: A0A0A0L3J8 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G431960 PE=4 SV=1) HSP 1 Score: 277 bits (709), Expect = 1.77e-93 Identity = 142/164 (86.59%), Postives = 150/164 (91.46%), Query Frame = 0
BLAST of MELO3C019076.jh1 vs. ExPASy TrEMBL
Match: A0A6J1EY87 (sigma factor binding protein 2, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111439409 PE=4 SV=1) HSP 1 Score: 181 bits (458), Expect = 2.44e-55 Identity = 106/164 (64.63%), Postives = 119/164 (72.56%), Query Frame = 0
BLAST of MELO3C019076.jh1 vs. TAIR 10
Match: AT3G56710.1 (sigma factor binding protein 1 ) HSP 1 Score: 55.5 bits (132), Expect = 4.8e-08 Identity = 41/86 (47.67%), Postives = 56/86 (65.12%), Query Frame = 0
BLAST of MELO3C019076.jh1 vs. TAIR 10
Match: AT2G41180.1 (VQ motif-containing protein ) HSP 1 Score: 53.9 bits (128), Expect = 1.4e-07 Identity = 48/141 (34.04%), Postives = 66/141 (46.81%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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