MELO3C019076.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C019076.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Descriptionsigma factor binding protein 2, chloroplastic
Locationchr08: 11218874 .. 11219430 (-)
RNA-Seq ExpressionMELO3C019076.jh1
SyntenyMELO3C019076.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCTAAAAAACCCTTTTCCCCCTTCCAAAATGGACGCCGGCGCCGCCACCGGAAACAACCCCCGAACTCTCGACGCCGTTTACCGGCGTAAACCTGCCAAGAAAACAAAACAATCCAACAAGAAATTAAAAAAACCCATCAAAGTTGTGTACATATCCAACCCCATGAAAGTTCAAACCAGTGCTTCTGAATTCATGGCTTTGGTCCAAGAACTCACCGGCCAAGACGCTGACTTTCCTGACCCCTCTAAACTCCCCCCATCCGCGGTATGCGACGACGCCGCCTCCACCGACCAACTCTACAACACGGTATCAGGTGGCGGTGACGACGACGGTGCTAGTAATCTTATTGTGAATAGTAACAACCCTTCACTTGTTGACGACGTGCCGGCGGAGGACGACATTCTCGGTAGCTTTTATGACGACTTTGACGACTTGATTTTTCCTCCTCCGGTAATGGGAAACTTATCTGGGTTGCTTCCGGGTCCCGTGGCAGCGGTTGTCTATGAATCTAATGCAAGGTGAAAATATTTTTTGATATTATAATGTGTGAAAGAT

mRNA sequence

CCCTAAAAAACCCTTTTCCCCCTTCCAAAATGGACGCCGGCGCCGCCACCGGAAACAACCCCCGAACTCTCGACGCCGTTTACCGGCGTAAACCTGCCAAGAAAACAAAACAATCCAACAAGAAATTAAAAAAACCCATCAAAGTTGTGTACATATCCAACCCCATGAAAGTTCAAACCAGTGCTTCTGAATTCATGGCTTTGGTCCAAGAACTCACCGGCCAAGACGCTGACTTTCCTGACCCCTCTAAACTCCCCCCATCCGCGGTATGCGACGACGCCGCCTCCACCGACCAACTCTACAACACGGTATCAGGTGGCGGTGACGACGACGGTGCTAGTAATCTTATTGTGAATAGTAACAACCCTTCACTTGTTGACGACGTGCCGGCGGAGGACGACATTCTCGGTAGCTTTTATGACGACTTTGACGACTTGATTTTTCCTCCTCCGGTAATGGGAAACTTATCTGGGTTGCTTCCGGGTCCCGTGGCAGCGGTTGTCTATGAATCTAATGCAAGGTGAAAATATTTTTTGATATTATAATGTGTGAAAGAT

Coding sequence (CDS)

ATGGACGCCGGCGCCGCCACCGGAAACAACCCCCGAACTCTCGACGCCGTTTACCGGCGTAAACCTGCCAAGAAAACAAAACAATCCAACAAGAAATTAAAAAAACCCATCAAAGTTGTGTACATATCCAACCCCATGAAAGTTCAAACCAGTGCTTCTGAATTCATGGCTTTGGTCCAAGAACTCACCGGCCAAGACGCTGACTTTCCTGACCCCTCTAAACTCCCCCCATCCGCGGTATGCGACGACGCCGCCTCCACCGACCAACTCTACAACACGGTATCAGGTGGCGGTGACGACGACGGTGCTAGTAATCTTATTGTGAATAGTAACAACCCTTCACTTGTTGACGACGTGCCGGCGGAGGACGACATTCTCGGTAGCTTTTATGACGACTTTGACGACTTGATTTTTCCTCCTCCGGTAATGGGAAACTTATCTGGGTTGCTTCCGGGTCCCGTGGCAGCGGTTGTCTATGAATCTAATGCAAGGTGA

Protein sequence

MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR
Homology
BLAST of MELO3C019076.jh1 vs. NCBI nr
Match: TYK04210.1 (sigma factor binding protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 320 bits (821), Expect = 3.07e-110
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0

Query: 1   MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 1   MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 60

Query: 61  ELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP 120
           ELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP
Sbjct: 61  ELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP 120

Query: 121 AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR 164
           AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR
Sbjct: 121 AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR 164

BLAST of MELO3C019076.jh1 vs. NCBI nr
Match: KAA0025974.1 (sigma factor binding protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 318 bits (814), Expect = 3.59e-109
Identity = 162/164 (98.78%), Postives = 163/164 (99.39%), Query Frame = 0

Query: 1   MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 1   MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 60

Query: 61  ELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP 120
           ELTGQDADFPDPSK PPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP 120

Query: 121 AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR 164
           AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGP+AAVVYESNAR
Sbjct: 121 AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNAR 164

BLAST of MELO3C019076.jh1 vs. NCBI nr
Match: XP_008455708.1 (PREDICTED: sigma factor binding protein 2, chloroplastic [Cucumis melo])

HSP 1 Score: 318 bits (814), Expect = 6.95e-109
Identity = 162/164 (98.78%), Postives = 163/164 (99.39%), Query Frame = 0

Query: 1   MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 20  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 79

Query: 61  ELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP 120
           ELTGQDADFPDPSK PPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP
Sbjct: 80  ELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP 139

Query: 121 AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR 164
           AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGP+AAVVYESNAR
Sbjct: 140 AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNAR 183

BLAST of MELO3C019076.jh1 vs. NCBI nr
Match: XP_011653858.1 (sigma factor binding protein 2, chloroplastic [Cucumis sativus])

HSP 1 Score: 277 bits (709), Expect = 3.66e-93
Identity = 142/164 (86.59%), Postives = 150/164 (91.46%), Query Frame = 0

Query: 1   MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAG ATG++ RTLDAVYRRKP KKTKQ   +LKKPIKVVYISNPMKVQTSAS FMALVQ
Sbjct: 1   MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQ 60

Query: 61  ELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP 120
           ELTGQDADFPDPSK PPSAVCD AASTDQLYNT+S GG+DDGA+NLIVNSNN SLVD+VP
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDGATNLIVNSNNSSLVDEVP 120

Query: 121 AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR 164
           AEDDILGSFYDDFDDLIFP PV+GN SGLLP PVAAVVYESNAR
Sbjct: 121 AEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR 164

BLAST of MELO3C019076.jh1 vs. NCBI nr
Match: KAE8649682.1 (hypothetical protein Csa_012221 [Cucumis sativus])

HSP 1 Score: 277 bits (709), Expect = 5.51e-93
Identity = 142/164 (86.59%), Postives = 150/164 (91.46%), Query Frame = 0

Query: 1   MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAG ATG++ RTLDAVYRRKP KKTKQ   +LKKPIKVVYISNPMKVQTSAS FMALVQ
Sbjct: 1   MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQ 60

Query: 61  ELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP 120
           ELTGQDADFPDPSK PPSAVCD AASTDQLYNT+S GG+DDGA+NLIVNSNN SLVD+VP
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDGATNLIVNSNNSSLVDEVP 120

Query: 121 AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR 164
           AEDDILGSFYDDFDDLIFP PV+GN SGLLP PVAAVVYESNAR
Sbjct: 121 AEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR 164

BLAST of MELO3C019076.jh1 vs. ExPASy Swiss-Prot
Match: Q9LDH1 (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB1 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.8e-07
Identity = 41/86 (47.67%), Postives = 56/86 (65.12%), Query Frame = 0

Query: 1  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLK------KPIKVVYISNPMKVQTSASE 60
          M++ ++T     +LD   ++KP+  +++S K+ K      KPIKV YISNPM+VQT AS+
Sbjct: 1  MESSSSTFLTTTSLD---KKKPSPVSRKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASK 60

Query: 61 FMALVQELTGQDA-DF-PDPSKLPPS 79
          F  LVQELTGQDA D  P+P   P S
Sbjct: 61 FRELVQELTGQDAVDLQPEPIYSPSS 83

BLAST of MELO3C019076.jh1 vs. ExPASy Swiss-Prot
Match: O80669 (Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB2 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.0e-06
Identity = 48/141 (34.04%), Postives = 66/141 (46.81%), Query Frame = 0

Query: 25  KTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKLPPSAVCDDA 84
           K K+ +    KPIKV YISNPM+V+T  S+F  LVQELTGQDA     + LPPS     A
Sbjct: 25  KQKRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQELTGQDA-----ADLPPSPTTFTA 84

Query: 85  ASTDQLYNTVSGGGDDDGASNLIVNSNNP--SLVDDVPAEDDILGSFYDDFDDLIFPPPV 144
                                  V+ + P  S ++  P + ++ G +Y   D+ +F  P 
Sbjct: 85  -----------------------VDLHRPCESEMNLEPLDGEVRGEYYSPLDEEVFNAPQ 134

Query: 145 MGNLSGLLPGPVAAVVYESNA 164
           M   S  L G  ++  Y  NA
Sbjct: 145 M---SAGLSGFFSSGFYNVNA 134

BLAST of MELO3C019076.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BYM2 (Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24967G00110 PE=4 SV=1)

HSP 1 Score: 320 bits (821), Expect = 1.49e-110
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0

Query: 1   MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 1   MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 60

Query: 61  ELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP 120
           ELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP
Sbjct: 61  ELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP 120

Query: 121 AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR 164
           AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR
Sbjct: 121 AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR 164

BLAST of MELO3C019076.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SJV9 (Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002890 PE=4 SV=1)

HSP 1 Score: 318 bits (814), Expect = 1.74e-109
Identity = 162/164 (98.78%), Postives = 163/164 (99.39%), Query Frame = 0

Query: 1   MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 1   MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 60

Query: 61  ELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP 120
           ELTGQDADFPDPSK PPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP 120

Query: 121 AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR 164
           AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGP+AAVVYESNAR
Sbjct: 121 AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNAR 164

BLAST of MELO3C019076.jh1 vs. ExPASy TrEMBL
Match: A0A1S3C276 (sigma factor binding protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495816 PE=4 SV=1)

HSP 1 Score: 318 bits (814), Expect = 3.37e-109
Identity = 162/164 (98.78%), Postives = 163/164 (99.39%), Query Frame = 0

Query: 1   MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 20  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 79

Query: 61  ELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP 120
           ELTGQDADFPDPSK PPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP
Sbjct: 80  ELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP 139

Query: 121 AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR 164
           AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGP+AAVVYESNAR
Sbjct: 140 AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNAR 183

BLAST of MELO3C019076.jh1 vs. ExPASy TrEMBL
Match: A0A0A0L3J8 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G431960 PE=4 SV=1)

HSP 1 Score: 277 bits (709), Expect = 1.77e-93
Identity = 142/164 (86.59%), Postives = 150/164 (91.46%), Query Frame = 0

Query: 1   MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDAG ATG++ RTLDAVYRRKP KKTKQ   +LKKPIKVVYISNPMKVQTSAS FMALVQ
Sbjct: 1   MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQ 60

Query: 61  ELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP 120
           ELTGQDADFPDPSK PPSAVCD AASTDQLYNT+S GG+DDGA+NLIVNSNN SLVD+VP
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDGATNLIVNSNNSSLVDEVP 120

Query: 121 AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR 164
           AEDDILGSFYDDFDDLIFP PV+GN SGLLP PVAAVVYESNAR
Sbjct: 121 AEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR 164

BLAST of MELO3C019076.jh1 vs. ExPASy TrEMBL
Match: A0A6J1EY87 (sigma factor binding protein 2, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111439409 PE=4 SV=1)

HSP 1 Score: 181 bits (458), Expect = 2.44e-55
Identity = 106/164 (64.63%), Postives = 119/164 (72.56%), Query Frame = 0

Query: 3   AGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQEL 62
           AG  TGN+ R LD V+RRKP KKTKQ NK   KPIKVVYISNPMKVQ SAS FMALVQ+L
Sbjct: 5   AGTGTGNSHRLLDGVHRRKPTKKTKQPNKN--KPIKVVYISNPMKVQISASGFMALVQQL 64

Query: 63  TGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVPAE 122
           TGQDADFPDPS  PP+AV D AA  D ++NT         A   ++N+NNPSL  ++P E
Sbjct: 65  TGQDADFPDPSTFPPAAVRDAAAFPD-IHNTT--------ADANLMNNNNPSLTVEIPME 124

Query: 123 DD-ILGSFYDDFDDLIFPPPVMGNLSGLLPGPVA-AVVYESNAR 164
           DD  LGSFYDD DDLIFPPPV+GN   LLP   A AV+YES AR
Sbjct: 125 DDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR 157

BLAST of MELO3C019076.jh1 vs. TAIR 10
Match: AT3G56710.1 (sigma factor binding protein 1 )

HSP 1 Score: 55.5 bits (132), Expect = 4.8e-08
Identity = 41/86 (47.67%), Postives = 56/86 (65.12%), Query Frame = 0

Query: 1  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLK------KPIKVVYISNPMKVQTSASE 60
          M++ ++T     +LD   ++KP+  +++S K+ K      KPIKV YISNPM+VQT AS+
Sbjct: 1  MESSSSTFLTTTSLD---KKKPSPVSRKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASK 60

Query: 61 FMALVQELTGQDA-DF-PDPSKLPPS 79
          F  LVQELTGQDA D  P+P   P S
Sbjct: 61 FRELVQELTGQDAVDLQPEPIYSPSS 83

BLAST of MELO3C019076.jh1 vs. TAIR 10
Match: AT2G41180.1 (VQ motif-containing protein )

HSP 1 Score: 53.9 bits (128), Expect = 1.4e-07
Identity = 48/141 (34.04%), Postives = 66/141 (46.81%), Query Frame = 0

Query: 25  KTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKLPPSAVCDDA 84
           K K+ +    KPIKV YISNPM+V+T  S+F  LVQELTGQDA     + LPPS     A
Sbjct: 25  KQKRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQELTGQDA-----ADLPPSPTTFTA 84

Query: 85  ASTDQLYNTVSGGGDDDGASNLIVNSNNP--SLVDDVPAEDDILGSFYDDFDDLIFPPPV 144
                                  V+ + P  S ++  P + ++ G +Y   D+ +F  P 
Sbjct: 85  -----------------------VDLHRPCESEMNLEPLDGEVRGEYYSPLDEEVFNAPQ 134

Query: 145 MGNLSGLLPGPVAAVVYESNA 164
           M   S  L G  ++  Y  NA
Sbjct: 145 M---SAGLSGFFSSGFYNVNA 134

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK04210.13.07e-110100.00sigma factor binding protein 2 [Cucumis melo var. makuwa][more]
KAA0025974.13.59e-10998.78sigma factor binding protein 2 [Cucumis melo var. makuwa][more]
XP_008455708.16.95e-10998.78PREDICTED: sigma factor binding protein 2, chloroplastic [Cucumis melo][more]
XP_011653858.13.66e-9386.59sigma factor binding protein 2, chloroplastic [Cucumis sativus][more]
KAE8649682.15.51e-9386.59hypothetical protein Csa_012221 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Q9LDH16.8e-0747.67Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN... [more]
O806692.0e-0634.04Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN... [more]
Match NameE-valueIdentityDescription
A0A5D3BYM21.49e-110100.00Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5A7SJV91.74e-10998.78Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A1S3C2763.37e-10998.78sigma factor binding protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC1034... [more]
A0A0A0L3J81.77e-9386.59VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G431960 PE=4 SV=... [more]
A0A6J1EY872.44e-5564.63sigma factor binding protein 2, chloroplastic-like OS=Cucurbita moschata OX=3662... [more]
Match NameE-valueIdentityDescription
AT3G56710.14.8e-0847.67sigma factor binding protein 1 [more]
AT2G41180.11.4e-0734.04VQ motif-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008889VQPFAMPF05678VQcoord: 42..67
e-value: 1.0E-12
score: 47.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
NoneNo IPR availablePANTHERPTHR33624:SF2SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTICcoord: 18..155
IPR039335Sigma factor binding protein 1/2PANTHERPTHR33624SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTICcoord: 18..155

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C019076.jh1.t1MELO3C019076.jh1.t1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051091 positive regulation of DNA-binding transcription factor activity