MELO3C019071 (gene) Melon (DHL92) v4

Overview


Name	MELO3C019071
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotrans_gag domain-containing protein
Location	chr08: 11246031 .. 11246289 (-)
RNA-Seq Expression	MELO3C019071
Synteny	MELO3C019071

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGCTTAGCTGTTGTTGTCATGCCAAGAAGAGGAAGAGGTGGTGGACAAGCTTCGAAAGCAGAACAATTGGTTAATGTGCAAGCAATGAGAGAAAGAGATGAGCAATTGTTTGCTAAGGTGAATTTGGAGAAGCAATTTAGCATAGAAAGATTGAAGGCAATAGGAGCCATGAATTTCGAAGGGACTGCGAATCTAGCTAACGTGGAAAAGTGGTTAAGCTTAGTAGAAAAGCACTTTGGAGTAATGGATTGTCCTTAA

mRNA sequence

GTGCTTAGCTGTTGTTGTCATGCCAAGAAGAGGAAGAGGTGGTGGACAAGCTTCGAAAGCAGAACAATTGGTTAATGTGCAAGCAATGAGAGAAAGAGATGAGCAATTGTTTGCTAAGGTGAATTTGGAGAAGCAATTTAGCATAGAAAGATTGAAGGCAATAGGAGCCATGAATTTCGAAGGGACTGCGAATCTAGCTAACGTGGAAAAGTGGTTAAGCTTAGTAGAAAAGCACTTTGGAGTAATGGATTGTCCTTAA

Coding sequence (CDS)

ATGCCAAGAAGAGGAAGAGGTGGTGGACAAGCTTCGAAAGCAGAACAATTGGTTAATGTGCAAGCAATGAGAGAAAGAGATGAGCAATTGTTTGCTAAGGTGAATTTGGAGAAGCAATTTAGCATAGAAAGATTGAAGGCAATAGGAGCCATGAATTTCGAAGGGACTGCGAATCTAGCTAACGTGGAAAAGTGGTTAAGCTTAGTAGAAAAGCACTTTGGAGTAATGGATTGTCCTTAA

Protein sequence

MPRRGRGGGQASKAEQLVNVQAMRERDEQLFAKVNLEKQFSIERLKAIGAMNFEGTANLANVEKWLSLVEKHFGVMDCP

Homology

[Close]

BLAST of MELO3C019071 vs. NCBI nr
Match: KAA0025993.1 (uncharacterized protein E6C27_scaffold34G003140 [Cucumis melo var. makuwa])

HSP 1 Score: 158.3 bits (399), Expect = 2.7e-35
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1   MPRRGRGGGQASKAEQLVNVQAMRERDEQLFAKVNLEKQFSIERLKAIGAMNFEGTANLA 60
           MPRRGRGGGQASKAEQLVNVQAMRERDEQLFAKVNLEKQFSIERLKAIGAMNFEGTANLA
Sbjct: 42  MPRRGRGGGQASKAEQLVNVQAMRERDEQLFAKVNLEKQFSIERLKAIGAMNFEGTANLA 101

Query: 61  NVEKWLSLVEKHFGVMDCP 80
           NVEKWLSLVEKHFGVMDCP
Sbjct: 102 NVEKWLSLVEKHFGVMDCP 120

[Close]

BLAST of MELO3C019071 vs. NCBI nr
Match: KAA0054739.1 (uncharacterized protein E6C27_scaffold437G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 102.8 bits (255), Expect = 1.4e-18
Identity = 56/81 (69.14%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 1  MPR--RGRGGGQASKAEQLVNVQAMRERDEQLFAKVNLEKQFSIERLKAIGAMNFEGTAN 60
          MPR  R RG GQAS+A +LVNVQA RER + LFAK NLE QFSIERLKA+GA  +EG A+
Sbjct: 1  MPRRERERGRGQASEAAKLVNVQARRERKKLLFAKTNLEGQFSIERLKALGATTYEGIAD 60

Query: 61 LANVEKWLSLVEKHFGVMDCP 80
           ANVEKWL LV K FGV+ CP
Sbjct: 61 PANVEKWLRLVNKCFGVISCP 81

[Close]

BLAST of MELO3C019071 vs. NCBI nr
Match: TYJ99705.1 (uncharacterized protein E5676_scaffold562G001040 [Cucumis melo var. makuwa])

HSP 1 Score: 102.1 bits (253), Expect = 2.3e-18
Identity = 55/81 (67.90%), Postives = 64/81 (79.01%), Query Frame = 0


Query: 1  MPRRG--RGGGQASKAEQLVNVQAMRERDEQLFAKVNLEKQFSIERLKAIGAMNFEGTAN 60
          +PRRG  RG GQAS+A +LVNVQA RER + LFAK NLE QFSIERLKA+GA  +EG A+
Sbjct: 9  IPRRGRERGRGQASEAAKLVNVQARRERKKLLFAKTNLEGQFSIERLKALGATTYEGIAD 68

Query: 61 LANVEKWLSLVEKHFGVMDCP 80
           A+VEKWL LV K FGV+ CP
Sbjct: 69 PADVEKWLRLVNKCFGVIGCP 89

[Close]

BLAST of MELO3C019071 vs. NCBI nr
Match: TYK16014.1 (uncharacterized protein E5676_scaffold3068G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 2.2e-16
Identity = 51/78 (65.38%), Postives = 60/78 (76.92%), Query Frame = 0


Query: 1  MPRRGRGGGQASKAEQLVNVQAMRERDEQLFAKVNLEKQFSIERLKAIGAMNFEGTANLA 60
          MP+RGRGGGQ S+A Q VNVQA +ER E+LFAKVNLEKQFSI+RLK +GAM FE TAN  
Sbjct: 1  MPKRGRGGGQDSEAAQSVNVQARKERKEKLFAKVNLEKQFSIKRLKVLGAMTFERTANAT 60

Query: 61 NVEKWLSLVEKHFGVMDC 79
          +       VEK+FGV+ C
Sbjct: 61 D-------VEKYFGVIGC 71

[Close]

BLAST of MELO3C019071 vs. NCBI nr
Match: KAA0064147.1 (uncharacterized protein E6C27_scaffold548G00700 [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 2.2e-16
Identity = 51/78 (65.38%), Postives = 60/78 (76.92%), Query Frame = 0


Query: 1  MPRRGRGGGQASKAEQLVNVQAMRERDEQLFAKVNLEKQFSIERLKAIGAMNFEGTANLA 60
          MP+RGRGGGQ S+A Q VNVQA +ER E+LFAKVNLEKQFSI+RLK +GAM FE TAN  
Sbjct: 1  MPKRGRGGGQDSEAAQSVNVQARKERKEKLFAKVNLEKQFSIKRLKVLGAMTFERTANAT 60

Query: 61 NVEKWLSLVEKHFGVMDC 79
          +       VEK+FGV+ C
Sbjct: 61 D-------VEKYFGVIGC 71

[Close]

BLAST of MELO3C019071 vs. ExPASy TrEMBL
Match: A0A5A7SMT2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G003140 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.3e-35
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1   MPRRGRGGGQASKAEQLVNVQAMRERDEQLFAKVNLEKQFSIERLKAIGAMNFEGTANLA 60
           MPRRGRGGGQASKAEQLVNVQAMRERDEQLFAKVNLEKQFSIERLKAIGAMNFEGTANLA
Sbjct: 42  MPRRGRGGGQASKAEQLVNVQAMRERDEQLFAKVNLEKQFSIERLKAIGAMNFEGTANLA 101

Query: 61  NVEKWLSLVEKHFGVMDCP 80
           NVEKWLSLVEKHFGVMDCP
Sbjct: 102 NVEKWLSLVEKHFGVMDCP 120

[Close]

BLAST of MELO3C019071 vs. ExPASy TrEMBL
Match: A0A5A7UMQ3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold437G00090 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 6.6e-19
Identity = 56/81 (69.14%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 1  MPR--RGRGGGQASKAEQLVNVQAMRERDEQLFAKVNLEKQFSIERLKAIGAMNFEGTAN 60
          MPR  R RG GQAS+A +LVNVQA RER + LFAK NLE QFSIERLKA+GA  +EG A+
Sbjct: 1  MPRRERERGRGQASEAAKLVNVQARRERKKLLFAKTNLEGQFSIERLKALGATTYEGIAD 60

Query: 61 LANVEKWLSLVEKHFGVMDCP 80
           ANVEKWL LV K FGV+ CP
Sbjct: 61 PANVEKWLRLVNKCFGVISCP 81

[Close]

BLAST of MELO3C019071 vs. ExPASy TrEMBL
Match: A0A5D3BN18 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G001040 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.1e-18
Identity = 55/81 (67.90%), Postives = 64/81 (79.01%), Query Frame = 0


Query: 1  MPRRG--RGGGQASKAEQLVNVQAMRERDEQLFAKVNLEKQFSIERLKAIGAMNFEGTAN 60
          +PRRG  RG GQAS+A +LVNVQA RER + LFAK NLE QFSIERLKA+GA  +EG A+
Sbjct: 9  IPRRGRERGRGQASEAAKLVNVQARRERKKLLFAKTNLEGQFSIERLKALGATTYEGIAD 68

Query: 61 LANVEKWLSLVEKHFGVMDCP 80
           A+VEKWL LV K FGV+ CP
Sbjct: 69 PADVEKWLRLVNKCFGVIGCP 89

[Close]

BLAST of MELO3C019071 vs. ExPASy TrEMBL
Match: A0A5D3CYI7 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3068G00100 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.1e-16
Identity = 51/78 (65.38%), Postives = 60/78 (76.92%), Query Frame = 0


Query: 1  MPRRGRGGGQASKAEQLVNVQAMRERDEQLFAKVNLEKQFSIERLKAIGAMNFEGTANLA 60
          MP+RGRGGGQ S+A Q VNVQA +ER E+LFAKVNLEKQFSI+RLK +GAM FE TAN  
Sbjct: 1  MPKRGRGGGQDSEAAQSVNVQARKERKEKLFAKVNLEKQFSIKRLKVLGAMTFERTANAT 60

Query: 61 NVEKWLSLVEKHFGVMDC 79
          +       VEK+FGV+ C
Sbjct: 61 D-------VEKYFGVIGC 71

[Close]

BLAST of MELO3C019071 vs. ExPASy TrEMBL
Match: A0A5A7VAV1 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G00700 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.1e-16
Identity = 51/78 (65.38%), Postives = 60/78 (76.92%), Query Frame = 0


Query: 1  MPRRGRGGGQASKAEQLVNVQAMRERDEQLFAKVNLEKQFSIERLKAIGAMNFEGTANLA 60
          MP+RGRGGGQ S+A Q VNVQA +ER E+LFAKVNLEKQFSI+RLK +GAM FE TAN  
Sbjct: 1  MPKRGRGGGQDSEAAQSVNVQARKERKEKLFAKVNLEKQFSIKRLKVLGAMTFERTANAT 60

Query: 61 NVEKWLSLVEKHFGVMDC 79
          +       VEK+FGV+ C
Sbjct: 61 D-------VEKYFGVIGC 71

The following BLAST results are available for this feature:

BLAST of MELO3C019071 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025993.1	2.7e-35	100.00	uncharacterized protein E6C27_scaffold34G003140 [Cucumis melo var. makuwa]	[more]
KAA0054739.1	1.4e-18	69.14	uncharacterized protein E6C27_scaffold437G00090 [Cucumis melo var. makuwa]	[more]
TYJ99705.1	2.3e-18	67.90	uncharacterized protein E5676_scaffold562G001040 [Cucumis melo var. makuwa]	[more]
TYK16014.1	2.2e-16	65.38	uncharacterized protein E5676_scaffold3068G00100 [Cucumis melo var. makuwa]	[more]
KAA0064147.1	2.2e-16	65.38	uncharacterized protein E6C27_scaffold548G00700 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C019071 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C019071 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SMT2	1.3e-35	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UMQ3	6.6e-19	69.14	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BN18	1.1e-18	67.90	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CYI7	1.1e-16	65.38	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7VAV1	1.1e-16	65.38	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of MELO3C019071 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019071.1	MELO3C019071.1	mRNA