MELO3C018976.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C018976.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Unknown protein
Location	chr07: 14176238 .. 14176420 (+)
RNA-Seq Expression	MELO3C018976.jh1
Synteny	MELO3C018976.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCTGGATTATAGAAGTCTTGCAAATCGCATTCGTAAAGGATGGCATGTGCAATGCTCCAACACTTAGCCACGTAATAGCCATCCACAAGAACAAGGCAACAACCAAAAAACTTAAGCCAAAGCAAGAAGGTTGTTCACAAAGTGGAGACAGAAGAAGACGACATAATGCAAAAGACGAG

mRNA sequence

ATGCCCTGGATTATAGAAGTCTTGCAAATCGCATTCGTAAAGGATGGCATGTGCAATGCTCCAACACTTAGCCACGTAATAGCCATCCACAAGAACAAGGCAACAACCAAAAAACTTAAGCCAAAGCAAGAAGGTTGTTCACAAAGTGGAGACAGAAGAAGACGACATAATGCAAAAGACGAG

Coding sequence (CDS)

ATGCCCTGGATTATAGAAGTCTTGCAAATCGCATTCGTAAAGGATGGCATGTGCAATGCTCCAACACTTAGCCACGTAATAGCCATCCACAAGAACAAGGCAACAACCAAAAAACTTAAGCCAAAGCAAGAAGGTTGTTCACAAAGTGGAGACAGAAGAAGACGACATAATGCAAAAGACGAG

Protein sequence

MPWIIEVLQIAFVKDGMCNAPTLSHVIAIHKNKATTKKLKPKQEGCSQSGDRRRRHNAKDE

Homology

[Close]

BLAST of MELO3C018976.jh1 vs. NCBI nr
Match: TYK00908.1 (hypothetical protein E5676_scaffold602G00710 [Cucumis melo var. makuwa])

HSP 1 Score: 47.4 bits (111), Expect = 8.49e-05
Identity = 24/41 (58.54%), Postives = 28/41 (68.29%), Query Frame = 0


Query: 5   IEVLQIAFVKDGMCNAPTLSHVIAIHKNKATTKKLKPKQEG 45
           +E L    VKDGMC   TL  +IAIHKNKA  K+LK K+EG
Sbjct: 64  LEKLPQVEVKDGMCTTITLPRIIAIHKNKARLKRLKTKKEG 104

[Close]

BLAST of MELO3C018976.jh1 vs. NCBI nr
Match: KAA0025420.1 (hypothetical protein E6C27_scaffold417G00040 [Cucumis melo var. makuwa] >TYK04763.1 hypothetical protein E5676_scaffold68G00650 [Cucumis melo var. makuwa])

HSP 1 Score: 47.4 bits (111), Expect = 1.07e-04
Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 13  VKDGMCNAPTLSHVIAIHKNKATTKKLKPKQEGCSQSGDRR 53
           VKDG+C++ TL  +IAIHKNKA +K LK KQ+G  +   RR
Sbjct: 61  VKDGVCSSSTLHRIIAIHKNKAKSKHLKTKQDGRRRDRGRR 101

[Close]

BLAST of MELO3C018976.jh1 vs. NCBI nr
Match: KAA0066376.1 (hypothetical protein E6C27_scaffold21G004490 [Cucumis melo var. makuwa])

HSP 1 Score: 47.4 bits (111), Expect = 3.11e-04
Identity = 24/41 (58.54%), Postives = 28/41 (68.29%), Query Frame = 0


Query: 5   IEVLQIAFVKDGMCNAPTLSHVIAIHKNKATTKKLKPKQEG 45
           +E L    VKDGMC   TL  +IAIHKNKA  K+LK K+EG
Sbjct: 161 LEKLPQVEVKDGMCTTITLPRIIAIHKNKARLKRLKTKKEG 201

[Close]

BLAST of MELO3C018976.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BPB1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G00710 PE=4 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 4.11e-05
Identity = 24/41 (58.54%), Postives = 28/41 (68.29%), Query Frame = 0


Query: 5   IEVLQIAFVKDGMCNAPTLSHVIAIHKNKATTKKLKPKQEG 45
           +E L    VKDGMC   TL  +IAIHKNKA  K+LK K+EG
Sbjct: 64  LEKLPQVEVKDGMCTTITLPRIIAIHKNKARLKRLKTKKEG 104

[Close]

BLAST of MELO3C018976.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SGZ8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G00650 PE=4 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 5.17e-05
Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 13  VKDGMCNAPTLSHVIAIHKNKATTKKLKPKQEGCSQSGDRR 53
           VKDG+C++ TL  +IAIHKNKA +K LK KQ+G  +   RR
Sbjct: 61  VKDGVCSSSTLHRIIAIHKNKAKSKHLKTKQDGRRRDRGRR 101

[Close]

BLAST of MELO3C018976.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VJ48 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G004490 PE=4 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.51e-04
Identity = 24/41 (58.54%), Postives = 28/41 (68.29%), Query Frame = 0


Query: 5   IEVLQIAFVKDGMCNAPTLSHVIAIHKNKATTKKLKPKQEG 45
           +E L    VKDGMC   TL  +IAIHKNKA  K+LK K+EG
Sbjct: 161 LEKLPQVEVKDGMCTTITLPRIIAIHKNKARLKRLKTKKEG 201

The following BLAST results are available for this feature:

BLAST of MELO3C018976.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK00908.1	8.49e-05	58.54	hypothetical protein E5676_scaffold602G00710 [Cucumis melo var. makuwa]	[more]
KAA0025420.1	1.07e-04	56.10	hypothetical protein E6C27_scaffold417G00040 [Cucumis melo var. makuwa] >TYK0476...	[more]
KAA0066376.1	3.11e-04	58.54	hypothetical protein E6C27_scaffold21G004490 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C018976.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C018976.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BPB1	4.11e-05	58.54	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SGZ8	5.17e-05	56.10	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VJ48	1.51e-04	58.54	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C018976.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C018976.jh1.t1	MELO3C018976.jh1.t1	mRNA