MELO3C018954.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C018954.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description50S ribosomal protein L29, chloroplastic
Locationchr07: 13673611 .. 13675960 (-)
RNA-Seq ExpressionMELO3C018954.jh1
SyntenyMELO3C018954.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAATATAATATATGTGGATAGCGGATGTACTATGGGCATTTGCGTAAATAGGGGTAAGAGGGGTAATAGGGGATCTCGAAAAGTAACAATAGAAGTGCTGGGAGCTTATCTCATTCTTTAGTAGCAGAGCGCTCTTACAAACTTTGAAGATGATAAACCTTTCAGTTGCTTCTTTACCTTCGGCCCTTCCAATCCCTTCAAAATTTCTTAATTCGACTTCCAAATCCTTCTTCAATGGCCTTCAAATCCGTTTCCCATTTTCGTTTTGCGTTCCTCCTAAAACTGCAACTACTGGAGGAGGCCGCAATTCATCGGTGGTAATGATGGCCAAGAGGGAGGAGGAATTGAAGGATATAAGGGCCAAAACTACTGAGGAAATAAACGAAGAGGTCGTCGATCTTAAGGGTGAACTTCTTATGCTTCGTCTTCAAAAATCAGCCCGCAATGAGTTTAAGTCTAGCGAATTCCGCCGCATGCGCAAACGGGTACTTTTTTCCCCTTGTTGATGGATTGATTCTTAATTAATTTTGAGTTCAATAGCCGTTTGTGGGAATGATTCTAGAAACATGTATGTTTGTGGGAATCAACTTAGGATGCAGATTTGAGTTCACAGCCGAAAGAAATTTACCAAAACAATATTTCACCATGTTGGGAATTTTTTACAAAAGTTGCATTTTAGATTCATTTAGAATGTGCTCTGGAACGTAGAGGTCCAGTTAGAATCAGAAAATGTAAACTGAAACTGGGATTTCTAACGTTAACGTCATATTCTACTAAGATAAACTCTAAATAGCTCCCTCATAGATTTTACATTTTTGATAAAATCGGCACCATCTTCGAGAAACCCCTCGTATGTCTTCATGTTAACATTTTGTATAAGATTCCCAAAATGCCTGAAGCTTGAATGAGTCTATAGATGTGGAAAGCATTTGGGTTTAGAACGACTTGTCTTCTTATATGAAGTTGGTTAATGTAAATAACCTAATTCTATTCTGATCATGGAAGCTCACAATTTAGTGCATAAAAGAGAGAGTTTGCCATTTGACCATATGTAGCCTTCTCCTGACTTTTACACCAAAACTTCATCATGCTTGGTGCTTAGTCTGGATATTGAAATTATCCGATGGGCTTCTCTATGTTCCACTAAACCAAAGCCCTCAACGATTAGAAATTGTTGAATAGCAAATAATTTATTTACACATTATGAATTTAGTAAGGCTCGCAGATTTTTTTAATTCCCTTATGATCATGAATTGCTGGAGAGATGGTTAACACTGTAATAGTGGTAAGACTTGCCCTTTCTCATAGTTTATGGTTTCAAGTCAAGTATGAGATTTAGGTAGCAAACTTTTTGCATCTGTAGTAATCGCATGGCTTCATGATAAGATCTTGAGTTGTTTGTAGTGACCCTCTAAAGTATTGTTTCAAAGCCTCTAACTGGGTAACTTAGTACTCCAAGGCCAGCTTTATGAAAGATTATTCAATGAGACCGCCACAATGTGTTGTCTCGTAATAACCGTTCAATGAGGATCTAATAATTGGTCGATCCCCTAATAACCACTTTATATAAATTTGAACTATTTCTCTCTGCATCTAAGGGTGAAAACTACCACCTACATCGTGATGGTCTAACTGAATAATTTCTCCGATATTGAACTAGGTGAAGCCTTCTTAGAGATTAGTGGTGAGTTCATGAACATAGGAATTGGCCTTGACAATCCTAGTCGTCAGTTAACCTGACTGATATATATGCAGTGGTATGATAATGTGGGACAATTAGGAAGTTTGTATTATATATTGCTTGTCTTCTCTCTTTATTGTATTTATTTATCTTCACATACCTTCAGATTGCAACATCGTAGCCAATACATCCAATGTTTGGTCTTGCCTAACAAGTTTCCTTTCGACACTATTTTTGAACCATTTATTGTTGTTTGTCCGGTGATAGATTTCTCGGATGCTAACAGTAAAACGTGAGAGAGAGATTGAAGAGGGTGTGGGCAAAAGGATGTCAAGAAAGTTAGATAGAAAGTGGAAGAAAAGTATTGTTGTCAGACCACCTCCATCTCTGAAGAAGTTGCGAGAGGAAGAAGCAGCAGCTGAAGAAGCTGAGAAATCTGCTTGAACGAATCAGATACATGCTCTCATTCAATCTTTATGAGTTTGAAGTTGTTGAGATTTGAGAACGCTGTTTAAGCAACACTTTAGAAAAAAAAAAATTTCCAACTTTAAACATTCTGATTCTTGTACTTAGCTTATGCACAAATGGAAATAGATTTCGAGTGGATCATGTTGAATTTATATGCTTTCACTTCTTAATTTAAATTAGATAAAAGGTATGTGGGAATG

mRNA sequence

AAAATATAATATATGTGGATAGCGGATGTACTATGGGCATTTGCGTAAATAGGGGTAAGAGGGGTAATAGGGGATCTCGAAAAGTAACAATAGAAGTGCTGGGAGCTTATCTCATTCTTTAGTAGCAGAGCGCTCTTACAAACTTTGAAGATGATAAACCTTTCAGTTGCTTCTTTACCTTCGGCCCTTCCAATCCCTTCAAAATTTCTTAATTCGACTTCCAAATCCTTCTTCAATGGCCTTCAAATCCGTTTCCCATTTTCGTTTTGCGTTCCTCCTAAAACTGCAACTACTGGAGGAGGCCGCAATTCATCGGTGGTAATGATGGCCAAGAGGGAGGAGGAATTGAAGGATATAAGGGCCAAAACTACTGAGGAAATAAACGAAGAGGTCGTCGATCTTAAGGGTGAACTTCTTATGCTTCGTCTTCAAAAATCAGCCCGCAATGAGTTTAAGTCTAGCGAATTCCGCCGCATGCGCAAACGGATTTCTCGGATGCTAACAGTAAAACGTGAGAGAGAGATTGAAGAGGGTGTGGGCAAAAGGATGTCAAGAAAGTTAGATAGAAAGTGGAAGAAAAGTATTGTTGTCAGACCACCTCCATCTCTGAAGAAGTTGCGAGAGGAAGAAGCAGCAGCTGAAGAAGCTGAGAAATCTGCTTGAACGAATCAGATACATGCTCTCATTCAATCTTTATGAGTTTGAAGTTGTTGAGATTTGAGAACGCTGTTTAAGCAACACTTTAGAAAAAAAAAAATTTCCAACTTTAAACATTCTGATTCTTGTACTTAGCTTATGCACAAATGGAAATAGATTTCGAGTGGATCATGTTGAATTTATATGCTTTCACTTCTTAATTTAAATTAGATAAAAGGTATGTGGGAATG

Coding sequence (CDS)

ATGATAAACCTTTCAGTTGCTTCTTTACCTTCGGCCCTTCCAATCCCTTCAAAATTTCTTAATTCGACTTCCAAATCCTTCTTCAATGGCCTTCAAATCCGTTTCCCATTTTCGTTTTGCGTTCCTCCTAAAACTGCAACTACTGGAGGAGGCCGCAATTCATCGGTGGTAATGATGGCCAAGAGGGAGGAGGAATTGAAGGATATAAGGGCCAAAACTACTGAGGAAATAAACGAAGAGGTCGTCGATCTTAAGGGTGAACTTCTTATGCTTCGTCTTCAAAAATCAGCCCGCAATGAGTTTAAGTCTAGCGAATTCCGCCGCATGCGCAAACGGATTTCTCGGATGCTAACAGTAAAACGTGAGAGAGAGATTGAAGAGGGTGTGGGCAAAAGGATGTCAAGAAAGTTAGATAGAAAGTGGAAGAAAAGTATTGTTGTCAGACCACCTCCATCTCTGAAGAAGTTGCGAGAGGAAGAAGCAGCAGCTGAAGAAGCTGAGAAATCTGCTTGA

Protein sequence

MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMAKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVKREREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
Homology
[Close]
BLAST of MELO3C018954.jh1 vs. NCBI nr
Match: XP_008455595.1 (PREDICTED: 50S ribosomal protein L29, chloroplastic [Cucumis melo] >KAA0053400.1 50S ribosomal protein L29 [Cucumis melo var. makuwa] >TYK15880.1 50S ribosomal protein L29 [Cucumis melo var. makuwa])

HSP 1 Score: 311 bits (796), Expect = 3.13e-106
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0 

Query: 1   MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMA 60
           MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMA
Sbjct: 1   MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMA 60

Query: 61  KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVK 120
           KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVK
Sbjct: 61  KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVK 120

Query: 121 REREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 170
           REREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 170

[Close]
BLAST of MELO3C018954.jh1 vs. NCBI nr
Match: XP_004137190.1 (50S ribosomal protein L29, chloroplastic [Cucumis sativus] >KGN53650.1 hypothetical protein Csa_015109 [Cucumis sativus])

HSP 1 Score: 290 bits (741), Expect = 7.59e-98
Identity = 158/170 (92.94%), Postives = 165/170 (97.06%), Query Frame = 0 

Query: 1   MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMA 60
           MINLS+ASLPS LPIPSKFLNSTSKS FN LQIRFPFSF +PPKTATTG GRNSSVVMMA
Sbjct: 1   MINLSIASLPSTLPIPSKFLNSTSKSSFNALQIRFPFSFRLPPKTATTGRGRNSSVVMMA 60

Query: 61  KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVK 120
           KRE+ELKDIR+KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTV+
Sbjct: 61  KREDELKDIRSKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVR 120

Query: 121 REREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 170
           REREIEEGVGKR+SRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 170

[Close]
BLAST of MELO3C018954.jh1 vs. NCBI nr
Match: XP_022941582.1 (50S ribosomal protein L29, chloroplastic-like [Cucurbita moschata] >KAG6600658.1 50S ribosomal protein L29, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031295.1 50S ribosomal protein L29, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 270 bits (690), Expect = 4.19e-90
Identity = 152/170 (89.41%), Postives = 162/170 (95.29%), Query Frame = 0 

Query: 1   MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMA 60
           MINLS+AS PS++  PSKFL+STSKS FNG QIRFPFSF VPPKTA+TGG RNSSVVMMA
Sbjct: 1   MINLSIAS-PSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGG-RNSSVVMMA 60

Query: 61  KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVK 120
           KREEELK+IR KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRI+RMLTVK
Sbjct: 61  KREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVK 120

Query: 121 REREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 170
           REREIEEGVGKR+SRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]
BLAST of MELO3C018954.jh1 vs. NCBI nr
Match: XP_022977189.1 (50S ribosomal protein L29, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 269 bits (687), Expect = 1.20e-89
Identity = 151/170 (88.82%), Postives = 162/170 (95.29%), Query Frame = 0 

Query: 1   MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMA 60
           M+NLS+AS PS++  PSKFL+STSKS FNG QIRFPFSF VPPKTA+TGG RNSSVVMMA
Sbjct: 1   MMNLSIAS-PSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGG-RNSSVVMMA 60

Query: 61  KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVK 120
           KREEELK+IR KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRI+RMLTVK
Sbjct: 61  KREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVK 120

Query: 121 REREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 170
           REREIEEGVGKR+SRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]
BLAST of MELO3C018954.jh1 vs. NCBI nr
Match: XP_023531622.1 (50S ribosomal protein L29, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 268 bits (684), Expect = 3.44e-89
Identity = 151/170 (88.82%), Postives = 161/170 (94.71%), Query Frame = 0 

Query: 1   MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMA 60
           MINLS+AS PS++  PSKFL+STSKS FNG QIRFPFSF VPPKTA+TGG RNS VVMMA
Sbjct: 1   MINLSIAS-PSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGG-RNSLVVMMA 60

Query: 61  KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVK 120
           KREEELK+IR KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRI+RMLTVK
Sbjct: 61  KREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVK 120

Query: 121 REREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 170
           REREIEEGVGKR+SRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]
BLAST of MELO3C018954.jh1 vs. ExPASy Swiss-Prot
Match: Q9FJP3 (50S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL29 PE=1 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.9e-44
Identity = 105/168 (62.50%), Postives = 132/168 (78.57%), Query Frame = 0 

Query: 1   MINLSVASLPSALPIPSKFLNSTS-KSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMM 60
           M++LS+A+  +A        ++TS  S F+G++I+   S  VP     +      SVVMM
Sbjct: 1   MLSLSIATPGTAAIFRRGTASATSTSSSFHGVRIQHQVSARVPAAATISSSSPKPSVVMM 60

Query: 61  AKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTV 120
           +KRE ELK+IR+KTTE++ EEVVDLKGEL MLRLQKSARNEFKSS+FRRM+K+++RMLTV
Sbjct: 61  SKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTV 120

Query: 121 KREREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAE 168
           KREREI+EG+ KR+SRKLDR+WKKSIV RPPPSLKKL+EEEAA E AE
Sbjct: 121 KREREIKEGIKKRLSRKLDRQWKKSIVPRPPPSLKKLQEEEAAEEAAE 168

[Close]
BLAST of MELO3C018954.jh1 vs. ExPASy Swiss-Prot
Match: P82248 (50S ribosomal protein L29, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL29 PE=1 SV=2)

HSP 1 Score: 154.8 bits (390), Expect = 8.5e-37
Identity = 96/168 (57.14%), Postives = 122/168 (72.62%), Query Frame = 0 

Query: 3   NLSVASLPSALPIPSKFLNSTSKSFFNGLQI-RFPFSFCVPPKTATTGGGRNSSVVMMAK 62
           +LS     S L  P K    T KS F+GL++     S  +  +  T      SSVV+M K
Sbjct: 6   SLSSTPCSSGLTSPPKSTLLT-KSSFHGLRLPSVNLSSSLRLRVQTP----PSSVVVMVK 65

Query: 63  REEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVKR 122
           +E+ELK++R KT E++NEE++ LKGEL MLRLQ+SAR  FK S+F RMRKR++RMLTVKR
Sbjct: 66  KEDELKELRTKTNEQLNEEILQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKR 125

Query: 123 EREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKS 170
           EREIE+GVGKR+SRKLD+ WK+SIVVRPPPSLKKL+E+  A  EAEK+
Sbjct: 126 EREIEQGVGKRLSRKLDKAWKRSIVVRPPPSLKKLQEKATAEAEAEKA 168

[Close]
BLAST of MELO3C018954.jh1 vs. ExPASy Swiss-Prot
Match: Q9SWI6 (50S ribosomal protein L29, chloroplastic OS=Zea mays OX=4577 GN=RPL29 PE=2 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 4.7e-35
Identity = 79/108 (73.15%), Postives = 98/108 (90.74%), Query Frame = 0 

Query: 52  RNSSVVMMAKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRK 111
           R +++V MAKRE+EL++IRA TTE++ EEVVDLKGEL +LRL++SAR EFK+SEF RMRK
Sbjct: 54  RAAAMVAMAKREQELEEIRAMTTEQMEEEVVDLKGELFLLRLKRSARQEFKNSEFSRMRK 113

Query: 112 RISRMLTVKREREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREE 160
           RI+RMLTVKREREIE+G+ KR+SRKLDRKWK+SIVVRPPPSL+  +EE
Sbjct: 114 RIARMLTVKREREIEQGINKRLSRKLDRKWKQSIVVRPPPSLRGNKEE 161

[Close]
BLAST of MELO3C018954.jh1 vs. ExPASy Swiss-Prot
Match: B8HMR2 (50S ribosomal protein L29 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395961 GN=rpmC PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 7.3e-04
Identity = 20/63 (31.75%), Postives = 45/63 (71.43%), Query Frame = 0 

Query: 65  ELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVKRERE 124
           ++KD+   +  E+  +++DLK +L  LRLQK+ R E K  +F+ +R ++++++T++R+R+
Sbjct: 5   KMKDLLDLSDAEVETQILDLKRQLFQLRLQKATRQEVKPHQFKHLRHQLAQLMTLERQRQ 64

Query: 125 IEE 128
           + +
Sbjct: 65  LTQ 67

[Close]
BLAST of MELO3C018954.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CWZ4 (50S ribosomal protein L29 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold637G00600 PE=3 SV=1)

HSP 1 Score: 311 bits (796), Expect = 1.52e-106
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0 

Query: 1   MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMA 60
           MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMA
Sbjct: 1   MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMA 60

Query: 61  KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVK 120
           KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVK
Sbjct: 61  KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVK 120

Query: 121 REREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 170
           REREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 170

[Close]
BLAST of MELO3C018954.jh1 vs. ExPASy TrEMBL
Match: A0A1S3C2I8 (50S ribosomal protein L29, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495732 PE=3 SV=1)

HSP 1 Score: 311 bits (796), Expect = 1.52e-106
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0 

Query: 1   MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMA 60
           MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMA
Sbjct: 1   MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMA 60

Query: 61  KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVK 120
           KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVK
Sbjct: 61  KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVK 120

Query: 121 REREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 170
           REREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 170

[Close]
BLAST of MELO3C018954.jh1 vs. ExPASy TrEMBL
Match: A0A0A0KVL7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G095600 PE=3 SV=1)

HSP 1 Score: 290 bits (741), Expect = 3.67e-98
Identity = 158/170 (92.94%), Postives = 165/170 (97.06%), Query Frame = 0 

Query: 1   MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMA 60
           MINLS+ASLPS LPIPSKFLNSTSKS FN LQIRFPFSF +PPKTATTG GRNSSVVMMA
Sbjct: 1   MINLSIASLPSTLPIPSKFLNSTSKSSFNALQIRFPFSFRLPPKTATTGRGRNSSVVMMA 60

Query: 61  KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVK 120
           KRE+ELKDIR+KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTV+
Sbjct: 61  KREDELKDIRSKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVR 120

Query: 121 REREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 170
           REREIEEGVGKR+SRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 170

[Close]
BLAST of MELO3C018954.jh1 vs. ExPASy TrEMBL
Match: A0A6J1FMW5 (50S ribosomal protein L29, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111446894 PE=3 SV=1)

HSP 1 Score: 270 bits (690), Expect = 2.03e-90
Identity = 152/170 (89.41%), Postives = 162/170 (95.29%), Query Frame = 0 

Query: 1   MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMA 60
           MINLS+AS PS++  PSKFL+STSKS FNG QIRFPFSF VPPKTA+TGG RNSSVVMMA
Sbjct: 1   MINLSIAS-PSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGG-RNSSVVMMA 60

Query: 61  KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVK 120
           KREEELK+IR KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRI+RMLTVK
Sbjct: 61  KREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVK 120

Query: 121 REREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 170
           REREIEEGVGKR+SRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]
BLAST of MELO3C018954.jh1 vs. ExPASy TrEMBL
Match: A0A6J1IQR3 (50S ribosomal protein L29, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111477475 PE=3 SV=1)

HSP 1 Score: 269 bits (687), Expect = 5.82e-90
Identity = 151/170 (88.82%), Postives = 162/170 (95.29%), Query Frame = 0 

Query: 1   MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMA 60
           M+NLS+AS PS++  PSKFL+STSKS FNG QIRFPFSF VPPKTA+TGG RNSSVVMMA
Sbjct: 1   MMNLSIAS-PSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGG-RNSSVVMMA 60

Query: 61  KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVK 120
           KREEELK+IR KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRI+RMLTVK
Sbjct: 61  KREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVK 120

Query: 121 REREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 170
           REREIEEGVGKR+SRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]
BLAST of MELO3C018954.jh1 vs. TAIR 10
Match: AT5G65220.1 (Ribosomal L29 family protein )

HSP 1 Score: 180.3 bits (456), Expect = 1.3e-45
Identity = 105/168 (62.50%), Postives = 132/168 (78.57%), Query Frame = 0 

Query: 1   MINLSVASLPSALPIPSKFLNSTS-KSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMM 60
           M++LS+A+  +A        ++TS  S F+G++I+   S  VP     +      SVVMM
Sbjct: 1   MLSLSIATPGTAAIFRRGTASATSTSSSFHGVRIQHQVSARVPAAATISSSSPKPSVVMM 60

Query: 61  AKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTV 120
           +KRE ELK+IR+KTTE++ EEVVDLKGEL MLRLQKSARNEFKSS+FRRM+K+++RMLTV
Sbjct: 61  SKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTV 120

Query: 121 KREREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAE 168
           KREREI+EG+ KR+SRKLDR+WKKSIV RPPPSLKKL+EEEAA E AE
Sbjct: 121 KREREIKEGIKKRLSRKLDRQWKKSIVPRPPPSLKKLQEEEAAEEAAE 168

The following BLAST results are available for this feature:
BLAST of MELO3C018954.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008455595.13.13e-106100.00PREDICTED: 50S ribosomal protein L29, chloroplastic [Cucumis melo] >KAA0053400.1... [more]
XP_004137190.17.59e-9892.9450S ribosomal protein L29, chloroplastic [Cucumis sativus] >KGN53650.1 hypotheti... [more]
XP_022941582.14.19e-9089.4150S ribosomal protein L29, chloroplastic-like [Cucurbita moschata] >KAG6600658.1... [more]
XP_022977189.11.20e-8988.8250S ribosomal protein L29, chloroplastic-like [Cucurbita maxima][more]
XP_023531622.13.44e-8988.8250S ribosomal protein L29, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
BLAST of MELO3C018954.jh1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FJP31.9e-4462.5050S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL2... [more]
P822488.5e-3757.1450S ribosomal protein L29, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL29 P... [more]
Q9SWI64.7e-3573.1550S ribosomal protein L29, chloroplastic OS=Zea mays OX=4577 GN=RPL29 PE=2 SV=1[more]
B8HMR27.3e-0431.7550S ribosomal protein L29 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=39... [more]
BLAST of MELO3C018954.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CWZ41.52e-106100.0050S ribosomal protein L29 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A1S3C2I81.52e-106100.0050S ribosomal protein L29, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495732... [more]
A0A0A0KVL73.67e-9892.94Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G095600 PE=3 SV=1[more]
A0A6J1FMW52.03e-9089.4150S ribosomal protein L29, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A6J1IQR35.82e-9088.8250S ribosomal protein L29, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
BLAST of MELO3C018954.jh1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G65220.11.3e-4562.50Ribosomal L29 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 153..170
NoneNo IPR availablePANTHERPTHR10916:SF1SUBFAMILY NOT NAMEDcoord: 1..170
NoneNo IPR availablePANTHERPTHR1091660S RIBOSOMAL PROTEIN L35/50S RIBOSOMAL PROTEIN L29coord: 1..170
NoneNo IPR availableCDDcd00427Ribosomal_L29_HIPcoord: 67..123
e-value: 3.32963E-15
score: 64.4311
IPR001854Ribosomal protein L29/L35PFAMPF00831Ribosomal_L29coord: 67..123
e-value: 2.7E-13
score: 49.6
IPR001854Ribosomal protein L29/L35TIGRFAMTIGR00012TIGR00012coord: 68..123
e-value: 1.8E-14
score: 51.4
IPR001854Ribosomal protein L29/L35HAMAPMF_00374Ribosomal_L29coord: 64..123
score: 12.523397
IPR036049Ribosomal protein L29/L35 superfamilyGENE3D1.10.287.310coord: 65..128
e-value: 1.2E-13
score: 52.8
IPR036049Ribosomal protein L29/L35 superfamilySUPERFAMILY46561Ribosomal protein L29 (L29p)coord: 66..126

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C018954.jh1.t1MELO3C018954.jh1.t1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome