MELO3C018913.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C018913.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr07: 12389875 .. 12390222 (-)
RNA-Seq ExpressionMELO3C018913.jh1
SyntenyMELO3C018913.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACGTTTCGAAACCTCACTCAATTCAAAATTTATCCCAAGGAAAGATGGTTCATCCTCGCTTTCACCCATTAAACGATCGAAACCATCCAAACGCTGTGAGGCTTCATCCAAGGAACCCATACCTGAGGGCTTTGGGAAGAAGATCTCTATCAAGCCAAGAACGCAAGAATCTTCATTCCATTCTCGCTCTATTAGACCTAATTCAGAGAAAGCTCAAAGACCCAAGAGAAGTGTGACAGACGCCACCCTTAAAGCAGATGAGTGGATGAAGCAAGAAGAAAGTATATATCATGGGTTGAGTAATTTGGAACCTGGAATGGGTACAATGAGGCTTGATGGTGACTAG

mRNA sequence

AAACGTTTCGAAACCTCACTCAATTCAAAATTTATCCCAAGGAAAGATGGTTCATCCTCGCTTTCACCCATTAAACGATCGAAACCATCCAAACGCTGTGAGGCTTCATCCAAGGAACCCATACCTGAGGGCTTTGGGAAGAAGATCTCTATCAAGCCAAGAACGCAAGAATCTTCATTCCATTCTCGCTCTATTAGACCTAATTCAGAGAAAGCTCAAAGACCCAAGAGAAGTGTGACAGACGCCACCCTTAAAGCAGATGAGTGGATGAAGCAAGAAGAAAGTATATATCATGGGTTGAGTAATTTGGAACCTGGAATGGGTACAATGAGGCTTGATGGTGACTAG

Coding sequence (CDS)

ATGGTTCATCCTCGCTTTCACCCATTAAACGATCGAAACCATCCAAACGCTGTGAGGCTTCATCCAAGGAACCCATACCTGAGGGCTTTGGGAAGAAGATCTCTATCAAGCCAAGAACGCAAGAATCTTCATTCCATTCTCGCTCTATTAGACCTAATTCAGAGAAAGCTCAAAGACCCAAGAGAAGTGTGA

Protein sequence

MVHPRFHPLNDRNHPNAVRLHPRNPYLRALGRRSLSSQERKNLHSILALLDLIQRKLKDPREV
Homology
[Close]
BLAST of MELO3C018913.jh1 vs. NCBI nr
Match: KAA0045336.1 (hypothetical protein E6C27_scaffold316G001120 [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 3.13e-08
Identity = 33/62 (53.23%), Postives = 40/62 (64.52%), Query Frame = 0 

Query: 1  MVHPRFHPLNDRNHPNAVRLHPRNPYLRALGRRSLSSQERKNLHSILALLDLIQRKLKDP 60
          MVHP    LN +NHPN + L PRNP LR LGRRS SS + K+ H     L+LIQ K +D 
Sbjct: 1  MVHPFNLMLNVQNHPNTMSLLPRNPDLRVLGRRSPSSPKHKDPHPSRTPLNLIQSKPRDL 60

Query: 61 RE 62
          R+
Sbjct: 61 RK 62

[Close]
BLAST of MELO3C018913.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TT82 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G001120 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.52e-08
Identity = 33/62 (53.23%), Postives = 40/62 (64.52%), Query Frame = 0 

Query: 1  MVHPRFHPLNDRNHPNAVRLHPRNPYLRALGRRSLSSQERKNLHSILALLDLIQRKLKDP 60
          MVHP    LN +NHPN + L PRNP LR LGRRS SS + K+ H     L+LIQ K +D 
Sbjct: 1  MVHPFNLMLNVQNHPNTMSLLPRNPDLRVLGRRSPSSPKHKDPHPSRTPLNLIQSKPRDL 60

Query: 61 RE 62
          R+
Sbjct: 61 RK 62

The following BLAST results are available for this feature:
BLAST of MELO3C018913.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0045336.13.13e-0853.23hypothetical protein E6C27_scaffold316G001120 [Cucumis melo var. makuwa][more]
BLAST of MELO3C018913.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C018913.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TT821.52e-0853.23Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of MELO3C018913.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C018913.jh1.t1MELO3C018913.jh1.t1mRNA