MELO3C018857 (gene) Melon (DHL92) v4

Overview


Name	MELO3C018857
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	transcription factor AS1
Location	chr01: 3396185 .. 3396370 (+)
RNA-Seq Expression	MELO3C018857
Synteny	MELO3C018857

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGGGGATGTCGGCCGCTCCGCGTCGCAATCACGTCGCGACAATAATAAAACTTACTTCATGGCCACTTCCAATGGGGGATTTCTTCAAACTGATTCATCTACTCCACCACCATCTCTTCCTCCTTGGCTTTCCAACTCCAACGGTGTTGTAGTTACCATCAAAGCTGGAAAAGCAAATTAA

mRNA sequence

ATGATTGGGGATGTCGGCCGCTCCGCGTCGCAATCACGTCGCGACAATAATAAAACTTACTTCATGGCCACTTCCAATGGGGGATTTCTTCAAACTGATTCATCTACTCCACCACCATCTCTTCCTCCTTGGCTTTCCAACTCCAACGGTGTTGTAGTTACCATCAAAGCTGGAAAAGCAAATTAA

Coding sequence (CDS)

ATGATTGGGGATGTCGGCCGCTCCGCGTCGCAATCACGTCGCGACAATAATAAAACTTACTTCATGGCCACTTCCAATGGGGGATTTCTTCAAACTGATTCATCTACTCCACCACCATCTCTTCCTCCTTGGCTTTCCAACTCCAACGGTGTTGTAGTTACCATCAAAGCTGGAAAAGCAAATTAA

Protein sequence

MIGDVGRSASQSRRDNNKTYFMATSNGGFLQTDSSTPPPSLPPWLSNSNGVVVTIKAGKAN

Homology

[Close]

BLAST of MELO3C018857 vs. NCBI nr
Match: KAG7027949.1 (Transcription factor AS1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 65.5 bits (158), Expect = 1.9e-07
Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 0


Query: 20 YFMATSNGGFLQTDSSTPPPSLPPWLSNSN 50
          Y MATSNGGFLQTDSSTPPPSLPPWLSNSN
Sbjct: 11 YLMATSNGGFLQTDSSTPPPSLPPWLSNSN 40

[Close]

BLAST of MELO3C018857 vs. NCBI nr
Match: XP_022982614.1 (transcription factor AS1-like [Cucurbita maxima] >XP_022982615.1 transcription factor AS1-like [Cucurbita maxima])

HSP 1 Score: 64.7 bits (156), Expect = 3.2e-07
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 22 MATSNGGFLQTDSSTPPPSLPPWLSNSNG 51
          MATSNGGFLQTDSSTPPPSLPPWLSNSNG
Sbjct: 1  MATSNGGFLQTDSSTPPPSLPPWLSNSNG 29

[Close]

BLAST of MELO3C018857 vs. NCBI nr
Match: KAG6580540.1 (Transcription factor AS1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017292.1 Transcription factor AS1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 64.7 bits (156), Expect = 3.2e-07
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 22 MATSNGGFLQTDSSTPPPSLPPWLSNSNG 51
          MATSNGGFLQTDSSTPPPSLPPWLSNSNG
Sbjct: 1  MATSNGGFLQTDSSTPPPSLPPWLSNSNG 29

[Close]

BLAST of MELO3C018857 vs. NCBI nr
Match: XP_022934855.1 (transcription factor AS1-like [Cucurbita moschata])

HSP 1 Score: 64.7 bits (156), Expect = 3.2e-07
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 22 MATSNGGFLQTDSSTPPPSLPPWLSNSNG 51
          MATSNGGFLQTDSSTPPPSLPPWLSNSNG
Sbjct: 1  MATSNGGFLQTDSSTPPPSLPPWLSNSNG 29

[Close]

BLAST of MELO3C018857 vs. NCBI nr
Match: XP_008442545.1 (PREDICTED: transcription factor AS1 [Cucumis melo] >KAA0044093.1 transcription factor AS1 [Cucumis melo var. makuwa] >TYK25044.1 transcription factor AS1 [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 3.2e-07
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 22 MATSNGGFLQTDSSTPPPSLPPWLSNSNG 51
          MATSNGGFLQTDSSTPPPSLPPWLSNSNG
Sbjct: 1  MATSNGGFLQTDSSTPPPSLPPWLSNSNG 29

[Close]

BLAST of MELO3C018857 vs. ExPASy TrEMBL
Match: A0A6J1J530 (transcription factor AS1-like OS=Cucurbita maxima OX=3661 GN=LOC111481437 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.5e-07
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 22 MATSNGGFLQTDSSTPPPSLPPWLSNSNG 51
          MATSNGGFLQTDSSTPPPSLPPWLSNSNG
Sbjct: 1  MATSNGGFLQTDSSTPPPSLPPWLSNSNG 29

[Close]

BLAST of MELO3C018857 vs. ExPASy TrEMBL
Match: A0A5D3DN74 (Transcription factor AS1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001650 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.5e-07
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 22 MATSNGGFLQTDSSTPPPSLPPWLSNSNG 51
          MATSNGGFLQTDSSTPPPSLPPWLSNSNG
Sbjct: 1  MATSNGGFLQTDSSTPPPSLPPWLSNSNG 29

[Close]

BLAST of MELO3C018857 vs. ExPASy TrEMBL
Match: A0A6J1CVZ3 (transcription factor AS1 OS=Momordica charantia OX=3673 GN=LOC111015078 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.5e-07
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 22 MATSNGGFLQTDSSTPPPSLPPWLSNSNG 51
          MATSNGGFLQTDSSTPPPSLPPWLSNSNG
Sbjct: 1  MATSNGGFLQTDSSTPPPSLPPWLSNSNG 29

[Close]

BLAST of MELO3C018857 vs. ExPASy TrEMBL
Match: A0A6J1F8X8 (transcription factor AS1-like OS=Cucurbita moschata OX=3662 GN=LOC111441895 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.5e-07
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 22 MATSNGGFLQTDSSTPPPSLPPWLSNSNG 51
          MATSNGGFLQTDSSTPPPSLPPWLSNSNG
Sbjct: 1  MATSNGGFLQTDSSTPPPSLPPWLSNSNG 29

[Close]

BLAST of MELO3C018857 vs. ExPASy TrEMBL
Match: A0A1S3B5G1 (transcription factor AS1 OS=Cucumis melo OX=3656 GN=LOC103486384 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.5e-07
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 22 MATSNGGFLQTDSSTPPPSLPPWLSNSNG 51
          MATSNGGFLQTDSSTPPPSLPPWLSNSNG
Sbjct: 1  MATSNGGFLQTDSSTPPPSLPPWLSNSNG 29

The following BLAST results are available for this feature:

BLAST of MELO3C018857 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7027949.1	1.9e-07	96.67	Transcription factor AS1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022982614.1	3.2e-07	100.00	transcription factor AS1-like [Cucurbita maxima] >XP_022982615.1 transcription f...	[more]
KAG6580540.1	3.2e-07	100.00	Transcription factor AS1, partial [Cucurbita argyrosperma subsp. sororia] >KAG70...	[more]
XP_022934855.1	3.2e-07	100.00	transcription factor AS1-like [Cucurbita moschata]	[more]
XP_008442545.1	3.2e-07	100.00	PREDICTED: transcription factor AS1 [Cucumis melo] >KAA0044093.1 transcription f...	[more]

BLAST of MELO3C018857 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C018857 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J530	1.5e-07	100.00	transcription factor AS1-like OS=Cucurbita maxima OX=3661 GN=LOC111481437 PE=4 S...	[more]
A0A5D3DN74	1.5e-07	100.00	Transcription factor AS1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A6J1CVZ3	1.5e-07	100.00	transcription factor AS1 OS=Momordica charantia OX=3673 GN=LOC111015078 PE=4 SV=...	[more]
A0A6J1F8X8	1.5e-07	100.00	transcription factor AS1-like OS=Cucurbita moschata OX=3662 GN=LOC111441895 PE=4...	[more]
A0A1S3B5G1	1.5e-07	100.00	transcription factor AS1 OS=Cucumis melo OX=3656 GN=LOC103486384 PE=4 SV=1	[more]

BLAST of MELO3C018857 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C018857.1	MELO3C018857.1	mRNA