MELO3C018806 (gene) Melon (DHL92) v4

Overview


Name	MELO3C018806
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Ubiquitin-like domain-containing protein
Location	chr01: 2916056 .. 2916373 (-)
RNA-Seq Expression	MELO3C018806
Synteny	MELO3C018806

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTGGTGGTGCAAAATTTGACGGGCTCTTTGTTCTTCGTTGAGGTTGAAGACGATGCCACCGTTTGTGATCTTAGAACTCAAATCACTGCTCACCAACACGATCTTCCTTCTCATCGATTGATCTTCATTCCCGACCACGATACAGAACGTCTCATCTCCCAAACCGATGATGGAATCTCGCTCGTTGATTTTGGCTTACGTGATGGTTCCCACATTTACATCTTTTTCTATCCCCTTGATGACGAAGATGGTGATGATATTGAAGCTCGTCGATTCTTCTTTGCTTCTTCTTCCAATCTTCTTCTCTTCTAA

mRNA sequence

ATGAAGTTGGTGGTGCAAAATTTGACGGGCTCTTTGTTCTTCGTTGAGGTTGAAGACGATGCCACCGTTTGTGATCTTAGAACTCAAATCACTGCTCACCAACACGATCTTCCTTCTCATCGATTGATCTTCATTCCCGACCACGATACAGAACGTCTCATCTCCCAAACCGATGATGGAATCTCGCTCGTTGATTTTGGCTTACGTGATGGTTCCCACATTTACATCTTTTTCTATCCCCTTGATGACGAAGATGGTGATGATATTGAAGCTCGTCGATTCTTCTTTGCTTCTTCTTCCAATCTTCTTCTCTTCTAA

Coding sequence (CDS)

ATGAAGTTGGTGGTGCAAAATTTGACGGGCTCTTTGTTCTTCGTTGAGGTTGAAGACGATGCCACCGTTTGTGATCTTAGAACTCAAATCACTGCTCACCAACACGATCTTCCTTCTCATCGATTGATCTTCATTCCCGACCACGATACAGAACGTCTCATCTCCCAAACCGATGATGGAATCTCGCTCGTTGATTTTGGCTTACGTGATGGTTCCCACATTTACATCTTTTTCTATCCCCTTGATGACGAAGATGGTGATGATATTGAAGCTCGTCGATTCTTCTTTGCTTCTTCTTCCAATCTTCTTCTCTTCTAA

Protein sequence

MKLVVQNLTGSLFFVEVEDDATVCDLRTQITAHQHDLPSHRLIFIPDHDTERLISQTDDGISLVDFGLRDGSHIYIFFYPLDDEDGDDIEARRFFFASSSNLLLF

Homology

[Close]

BLAST of MELO3C018806 vs. NCBI nr
Match: KGN43536.1 (hypothetical protein Csa_020453 [Cucumis sativus])

HSP 1 Score: 186.0 bits (471), Expect = 1.6e-43
Identity = 94/107 (87.85%), Postives = 98/107 (91.59%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFFVEVEDDATVCDLRTQITA--HQHDLPSHRLIFIPDHDTERLISQTD 60
           MKLVVQNLTGSLFFVEVEDDATV DLRTQI A  HQH+LPSHRLIFIPDH+ ERLISQ D
Sbjct: 1   MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD 60

Query: 61  DGISLVDFGLRDGSHIYIFFYPLDDEDGDDIEARRFFFASSSNLLLF 106
           DGISLVDFGLRDGSHIYIFF PL D+DGDDIEARRFFF SSS+LLLF
Sbjct: 61  DGISLVDFGLRDGSHIYIFFSPLHDDDGDDIEARRFFFTSSSDLLLF 107

[Close]

BLAST of MELO3C018806 vs. NCBI nr
Match: XP_022989504.1 (uncharacterized protein LOC111486561 [Cucurbita maxima])

HSP 1 Score: 142.5 bits (358), Expect = 2.1e-30
Identity = 73/105 (69.52%), Postives = 87/105 (82.86%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFFVEVEDDATVCDLRTQITAHQHDLPSHRLIFIPDHDTERLISQTDDG 60
           MKLV +NLTGSLF+VEV+D ATV DLRT+I++ Q  LPS RL+F+PDHD  RLIS  DDG
Sbjct: 1   MKLVAENLTGSLFYVEVDDGATVLDLRTEISS-QQSLPSDRLLFVPDHDRGRLISVADDG 60

Query: 61  ISLVDFGLRDGSHIYIFFYPLDDEDGDDIEARRFFFASSSNLLLF 106
           ISLVDFGLRDGS IYIFF PLDD+ GDD++AR+ FF +  +LLLF
Sbjct: 61  ISLVDFGLRDGSLIYIFFCPLDDDGGDDVDARQLFF-NCPDLLLF 103

[Close]

BLAST of MELO3C018806 vs. NCBI nr
Match: KAG6589175.1 (hypothetical protein SDJN03_17740, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137.9 bits (346), Expect = 5.1e-29
Identity = 71/105 (67.62%), Postives = 85/105 (80.95%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFFVEVEDDATVCDLRTQITAHQHDLPSHRLIFIPDHDTERLISQTDDG 60
           MKLV +NLTGSLF+VEV+D ATV DLRT+I++ Q  LPS RL+F+PDHD  RLIS  DDG
Sbjct: 1   MKLVAENLTGSLFYVEVDDGATVLDLRTEISS-QQSLPSDRLLFVPDHDRGRLISAADDG 60

Query: 61  ISLVDFGLRDGSHIYIFFYPLDDEDGDDIEARRFFFASSSNLLLF 106
            SLVDFGLRDGS IY+FF PLDDE  DD++AR+ FF +  +LLLF
Sbjct: 61  TSLVDFGLRDGSLIYVFFCPLDDEGVDDLDARQLFF-NCPDLLLF 103

[Close]

BLAST of MELO3C018806 vs. NCBI nr
Match: XP_022930696.1 (uncharacterized protein LOC111437093 [Cucurbita moschata])

HSP 1 Score: 136.3 bits (342), Expect = 1.5e-28
Identity = 70/105 (66.67%), Postives = 85/105 (80.95%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFFVEVEDDATVCDLRTQITAHQHDLPSHRLIFIPDHDTERLISQTDDG 60
           MKLV +NLTGSLF+VEV+D ATV DLRT+I++ Q  LPS RL+F+PDHD  RLIS  DDG
Sbjct: 1   MKLVAENLTGSLFYVEVDDGATVLDLRTEISS-QQSLPSDRLLFVPDHDRGRLISAADDG 60

Query: 61  ISLVDFGLRDGSHIYIFFYPLDDEDGDDIEARRFFFASSSNLLLF 106
            SLVDFGLRDGS IY+FF PLD+E  DD++AR+ FF +  +LLLF
Sbjct: 61  TSLVDFGLRDGSLIYVFFCPLDEEGVDDLDARQLFF-NCPDLLLF 103

[Close]

BLAST of MELO3C018806 vs. NCBI nr
Match: XP_022136124.1 (uncharacterized protein LOC111007894 [Momordica charantia])

HSP 1 Score: 123.2 bits (308), Expect = 1.3e-24
Identity = 67/114 (58.77%), Postives = 83/114 (72.81%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFFVEVEDDATVCDLRTQITA-HQHDLPSHRLIFIPDHDTERLISQTDD 60
           MKL V+NLTGSLF ++V+DDATV DL+ +I+A H +DLPS RLIFI D +  R IS+ DD
Sbjct: 1   MKLAVENLTGSLFHIQVKDDATVSDLKAEISAHHNNDLPSDRLIFIADDNPGRPISKDDD 60

Query: 61  GISLVDFGLRDGSHIYIFFYPLDDED-----GDDIEA---RRFFFASSSNLLLF 106
           G SLVD G++DGSHIYIFF+PLD ED     GDD +     R FF +  N+LLF
Sbjct: 61  GFSLVDCGVKDGSHIYIFFHPLDHEDDRDHGGDDPDQDHHSRLFFFTCHNILLF 114

[Close]

BLAST of MELO3C018806 vs. ExPASy TrEMBL
Match: A0A0A0K6V6 (Ubiquitin-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G044270 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 7.9e-44
Identity = 94/107 (87.85%), Postives = 98/107 (91.59%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFFVEVEDDATVCDLRTQITA--HQHDLPSHRLIFIPDHDTERLISQTD 60
           MKLVVQNLTGSLFFVEVEDDATV DLRTQI A  HQH+LPSHRLIFIPDH+ ERLISQ D
Sbjct: 1   MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD 60

Query: 61  DGISLVDFGLRDGSHIYIFFYPLDDEDGDDIEARRFFFASSSNLLLF 106
           DGISLVDFGLRDGSHIYIFF PL D+DGDDIEARRFFF SSS+LLLF
Sbjct: 61  DGISLVDFGLRDGSHIYIFFSPLHDDDGDDIEARRFFFTSSSDLLLF 107

[Close]

BLAST of MELO3C018806 vs. ExPASy TrEMBL
Match: A0A6J1JPI4 (uncharacterized protein LOC111486561 OS=Cucurbita maxima OX=3661 GN=LOC111486561 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.0e-30
Identity = 73/105 (69.52%), Postives = 87/105 (82.86%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFFVEVEDDATVCDLRTQITAHQHDLPSHRLIFIPDHDTERLISQTDDG 60
           MKLV +NLTGSLF+VEV+D ATV DLRT+I++ Q  LPS RL+F+PDHD  RLIS  DDG
Sbjct: 1   MKLVAENLTGSLFYVEVDDGATVLDLRTEISS-QQSLPSDRLLFVPDHDRGRLISVADDG 60

Query: 61  ISLVDFGLRDGSHIYIFFYPLDDEDGDDIEARRFFFASSSNLLLF 106
           ISLVDFGLRDGS IYIFF PLDD+ GDD++AR+ FF +  +LLLF
Sbjct: 61  ISLVDFGLRDGSLIYIFFCPLDDDGGDDVDARQLFF-NCPDLLLF 103

[Close]

BLAST of MELO3C018806 vs. ExPASy TrEMBL
Match: A0A6J1ERN4 (uncharacterized protein LOC111437093 OS=Cucurbita moschata OX=3662 GN=LOC111437093 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 7.1e-29
Identity = 70/105 (66.67%), Postives = 85/105 (80.95%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFFVEVEDDATVCDLRTQITAHQHDLPSHRLIFIPDHDTERLISQTDDG 60
           MKLV +NLTGSLF+VEV+D ATV DLRT+I++ Q  LPS RL+F+PDHD  RLIS  DDG
Sbjct: 1   MKLVAENLTGSLFYVEVDDGATVLDLRTEISS-QQSLPSDRLLFVPDHDRGRLISAADDG 60

Query: 61  ISLVDFGLRDGSHIYIFFYPLDDEDGDDIEARRFFFASSSNLLLF 106
            SLVDFGLRDGS IY+FF PLD+E  DD++AR+ FF +  +LLLF
Sbjct: 61  TSLVDFGLRDGSLIYVFFCPLDEEGVDDLDARQLFF-NCPDLLLF 103

[Close]

BLAST of MELO3C018806 vs. ExPASy TrEMBL
Match: A0A6J1C3E5 (uncharacterized protein LOC111007894 OS=Momordica charantia OX=3673 GN=LOC111007894 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 6.3e-25
Identity = 67/114 (58.77%), Postives = 83/114 (72.81%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFFVEVEDDATVCDLRTQITA-HQHDLPSHRLIFIPDHDTERLISQTDD 60
           MKL V+NLTGSLF ++V+DDATV DL+ +I+A H +DLPS RLIFI D +  R IS+ DD
Sbjct: 1   MKLAVENLTGSLFHIQVKDDATVSDLKAEISAHHNNDLPSDRLIFIADDNPGRPISKDDD 60

Query: 61  GISLVDFGLRDGSHIYIFFYPLDDED-----GDDIEA---RRFFFASSSNLLLF 106
           G SLVD G++DGSHIYIFF+PLD ED     GDD +     R FF +  N+LLF
Sbjct: 61  GFSLVDCGVKDGSHIYIFFHPLDHEDDRDHGGDDPDQDHHSRLFFFTCHNILLF 114

[Close]

BLAST of MELO3C018806 vs. ExPASy TrEMBL
Match: A0A5D3BP45 (Phosphoglucan phosphatase LSF1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1545G00410 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.8e-22
Identity = 55/72 (76.39%), Postives = 61/72 (84.72%), Query Frame = 0


Query: 27  RTQITAHQHDLPSHRLIFIPDHDTERLISQTDDGISLVDFGLRDGSHIYIFFYPLDDEDG 86
           RTQI AHQ +LPSH LIFI DHD ERLIS+ DD ISLVDFGL DGS+IYIFF PLD++ G
Sbjct: 575 RTQIIAHQRNLPSHCLIFILDHDPERLISEVDDKISLVDFGLHDGSNIYIFFCPLDNDGG 634

Query: 87  DDIEARRFFFAS 99
           DDIEARRFFF +
Sbjct: 635 DDIEARRFFFTT 646

[Close]

BLAST of MELO3C018806 vs. TAIR 10
Match: AT2G32360.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-08
Identity = 32/79 (40.51%), Postives = 50/79 (63.29%), Query Frame = 0


Query: 1  MKLVVQNLTGSLFFVEVEDDATVCDLRTQITAHQHDLPSHRLIF-IPDHDTERLISQTDD 60
          MK+ V+ +TG+    +V +DATV  ++ +I A +  LP  RLI  I D +T RL+ + +D
Sbjct: 1  MKVSVEIITGTFIDTDVSEDATVKQMKEKI-AVEVKLPVTRLILVIGDEETRRLVMEDED 60

Query: 61 GISLVDFGLRDGSHIYIFF 79
           + L D G+ + SHIY+FF
Sbjct: 61 DMMLRDLGVGEDSHIYLFF 78

The following BLAST results are available for this feature:

BLAST of MELO3C018806 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43536.1	1.6e-43	87.85	hypothetical protein Csa_020453 [Cucumis sativus]	[more]
XP_022989504.1	2.1e-30	69.52	uncharacterized protein LOC111486561 [Cucurbita maxima]	[more]
KAG6589175.1	5.1e-29	67.62	hypothetical protein SDJN03_17740, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022930696.1	1.5e-28	66.67	uncharacterized protein LOC111437093 [Cucurbita moschata]	[more]
XP_022136124.1	1.3e-24	58.77	uncharacterized protein LOC111007894 [Momordica charantia]	[more]

BLAST of MELO3C018806 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C018806 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6V6	7.9e-44	87.85	Ubiquitin-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G044...	[more]
A0A6J1JPI4	1.0e-30	69.52	uncharacterized protein LOC111486561 OS=Cucurbita maxima OX=3661 GN=LOC111486561...	[more]
A0A6J1ERN4	7.1e-29	66.67	uncharacterized protein LOC111437093 OS=Cucurbita moschata OX=3662 GN=LOC1114370...	[more]
A0A6J1C3E5	6.3e-25	58.77	uncharacterized protein LOC111007894 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A5D3BP45	3.8e-22	76.39	Phosphoglucan phosphatase LSF1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of MELO3C018806 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32360.1	1.4e-08	40.51	Ubiquitin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.20.90		coord: 1..78 e-value: 6.3E-7 score: 31.1
IPR000626	Ubiquitin-like domain	PROSITE	PS50053	UBIQUITIN_2	coord: 1..76 score: 8.611381
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 1..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C018806.1	MELO3C018806.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding