MELO3C018786.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C018786.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Geranylgeranyl transferase type-2 subunit beta-like
Location	chr01: 2827906 .. 2828840 (-)
RNA-Seq Expression	MELO3C018786.jh1
Synteny	MELO3C018786.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGGGGGATTTGGATGCACTCCTGGTGGAGAATCTCACTCTTGACAAAGGATATTTTCAACATATCTTATCGTTTGTGTATTCACTTACATATGTTTTAAATTCATTATCATTTCGTCTGAGTGATGAGATTTCTCTTGTACTTCAAAACAATTTGTGTTGCTTACTTCTCTTACGATGTTTGGTACTATCCTGCTTGGACATTGAAATTGCATTTGTATTAGTGCATATTTATGCTCTTTGATTGCTCAAGTCTTATGAATCAAAATTTACTTATCAATTGTTTTAGGTTTCGTGTCTTAATGTCAGGTTCTGCTGTGATGTCAGTTTTCTGTTGTGTTGGCTCGCTTGCTATAATGGGTTCTCTACAACATATTGACAAGGATCTCCTTGGCTTGTGGTTATGTGAGCGGCAAATCAAATCTGGAGGTCCTCGTGGTCGACCCGAGAAACTTCCTGAATGTGGTTTCGAACTCCTATTACATACTCTAACCAATTCTTGGCTTGGAAGTTATTCATACTCTCCCACTCACCAACTTCATTGTGTTGCTTCAGTTTTGCTACTCACGGTGGGTTCTTTCGAACTTGATCATGATTGACAGAGTTTACTGGATTAATAAGGAAAAACTGAATAACTGAAGGAAGATCCTAAACCTAAAAGGAAGATGAAAATTAAGTTCATCTTAGACTGTCAGTTTGTTAAGCCAAATCTTCTTTGTCTAGATTGGATTTATGTATAAGGGGTAATTATATTGCTTTTAACGAAGGTAACTTCCATAACATAACATAACTATTGAAAGTTTCAGGACACAGAAAATGGTGGTATTTCAGACAGATCGGATGGTGCTGTTGATGTCTACCACACATACCACACATGCTTGAACAGAATTTTCTTGAGCAAAAAAATAGTATCCTCCAATGCTATTGATTGA

mRNA sequence

ATGGATGGGGGATTTGGATGCACTCCTGGTTCTGCTGTGATGTCAGTTTTCTGTTGTGTTGGCTCGCTTGCTATAATGGGTTCTCTACAACATATTGACAAGGATCTCCTTGGCTTGTGGTTATGTGAGCGGCAAATCAAATCTGGAGGTCCTCGTGGTCGACCCGAGAAACTTCCTGAATGTGGTTTCGAACTCCTATTACATACTCTAACCAATTCTTGGCTTGGAAGTTATTCATACTCTCCCACTCACCAACTTCATTGTGTTGCTTCAGTTTTGCTACTCACGGACACAGAAAATGGTGGTATTTCAGACAGATCGGATGGTGCTGTTGATGTCTACCACACATACCACACATGCTTGAACAGAATTTTCTTGAGCAAAAAAATAGTATCCTCCAATGCTATTGATTGA

Coding sequence (CDS)

ATGGATGGGGGATTTGGATGCACTCCTGGTTCTGCTGTGATGTCAGTTTTCTGTTGTGTTGGCTCGCTTGCTATAATGGGTTCTCTACAACATATTGACAAGGATCTCCTTGGCTTGTGGTTATGTGAGCGGCAAATCAAATCTGGAGGTCCTCGTGGTCGACCCGAGAAACTTCCTGAATGTGGTTTCGAACTCCTATTACATACTCTAACCAATTCTTGGCTTGGAAGTTATTCATACTCTCCCACTCACCAACTTCATTGTGTTGCTTCAGTTTTGCTACTCACGGACACAGAAAATGGTGGTATTTCAGACAGATCGGATGGTGCTGTTGATGTCTACCACACATACCACACATGCTTGAACAGAATTTTCTTGAGCAAAAAAATAGTATCCTCCAATGCTATTGATTGA

Protein sequence

MDGGFGCTPGSAVMSVFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECGFELLLHTLTNSWLGSYSYSPTHQLHCVASVLLLTDTENGGISDRSDGAVDVYHTYHTCLNRIFLSKKIVSSNAID

Homology

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BLAST of MELO3C018786.jh1 vs. NCBI nr
Match: KAA0031621.1 (geranylgeranyl transferase type-2 subunit beta-like [Cucumis melo var. makuwa] >TYK07073.1 geranylgeranyl transferase type-2 subunit beta-like [Cucumis melo var. makuwa])

HSP 1 Score: 186 bits (473), Expect = 2.82e-58
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 10  GSAVMSVFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECGFELLLHT 69
           GSAVMSVFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECGFELLLHT
Sbjct: 27  GSAVMSVFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECGFELLLHT 86

Query: 70  LTNSWLGSYSYSPTHQLHCVASVLLLT 96
           LTNSWLGSYSYSPTHQLHCVASVLLLT
Sbjct: 87  LTNSWLGSYSYSPTHQLHCVASVLLLT 113

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BLAST of MELO3C018786.jh1 vs. NCBI nr
Match: XP_038887312.1 (geranylgeranyl transferase type-2 subunit beta 1-like isoform X3 [Benincasa hispida])

HSP 1 Score: 135 bits (341), Expect = 2.48e-36
Identity = 73/120 (60.83%), Postives = 84/120 (70.00%), Query Frame = 0


Query: 1   MDGGFGCTPGSAVMS--VFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKL 60
           MDGGFGCTPG    S  +FCCVG+LAIMGSL HIDKDLLG WLCERQ+KSGG  GRPEKL
Sbjct: 124 MDGGFGCTPGGESHSGQIFCCVGALAIMGSLHHIDKDLLGWWLCERQVKSGGLNGRPEKL 183

Query: 61  PE-CGFELLLHTLTNSWLGSYSYSPTHQLHCVASVLLLTDTENGGISDRSDGAVDVYHTY 117
           P+ C    +L +L    +G   +    +L  +  +L   DTENGGISDR D AVDVYHTY
Sbjct: 184 PDVCYSWWVLSSLI--MIGRVHWINKEKL--IKFILDCQDTENGGISDRPDDAVDVYHTY 239

[Close]

BLAST of MELO3C018786.jh1 vs. NCBI nr
Match: XP_038887310.1 (geranylgeranyl transferase type-2 subunit beta 1-like isoform X2 [Benincasa hispida] >XP_038887311.1 geranylgeranyl transferase type-2 subunit beta 1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 135 bits (341), Expect = 3.38e-36
Identity = 73/120 (60.83%), Postives = 84/120 (70.00%), Query Frame = 0


Query: 1   MDGGFGCTPGSAVMS--VFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKL 60
           MDGGFGCTPG    S  +FCCVG+LAIMGSL HIDKDLLG WLCERQ+KSGG  GRPEKL
Sbjct: 137 MDGGFGCTPGGESHSGQIFCCVGALAIMGSLHHIDKDLLGWWLCERQVKSGGLNGRPEKL 196

Query: 61  PE-CGFELLLHTLTNSWLGSYSYSPTHQLHCVASVLLLTDTENGGISDRSDGAVDVYHTY 117
           P+ C    +L +L    +G   +    +L  +  +L   DTENGGISDR D AVDVYHTY
Sbjct: 197 PDVCYSWWVLSSLI--MIGRVHWINKEKL--IKFILDCQDTENGGISDRPDDAVDVYHTY 252

[Close]

BLAST of MELO3C018786.jh1 vs. NCBI nr
Match: XP_038887307.1 (geranylgeranyl transferase type-2 subunit beta 1-like isoform X1 [Benincasa hispida] >XP_038887308.1 geranylgeranyl transferase type-2 subunit beta 1-like isoform X1 [Benincasa hispida] >XP_038887309.1 geranylgeranyl transferase type-2 subunit beta 1-like isoform X1 [Benincasa hispida])

HSP 1 Score: 135 bits (341), Expect = 6.14e-36
Identity = 73/120 (60.83%), Postives = 84/120 (70.00%), Query Frame = 0


Query: 1   MDGGFGCTPGSAVMS--VFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKL 60
           MDGGFGCTPG    S  +FCCVG+LAIMGSL HIDKDLLG WLCERQ+KSGG  GRPEKL
Sbjct: 163 MDGGFGCTPGGESHSGQIFCCVGALAIMGSLHHIDKDLLGWWLCERQVKSGGLNGRPEKL 222

Query: 61  PE-CGFELLLHTLTNSWLGSYSYSPTHQLHCVASVLLLTDTENGGISDRSDGAVDVYHTY 117
           P+ C    +L +L    +G   +    +L  +  +L   DTENGGISDR D AVDVYHTY
Sbjct: 223 PDVCYSWWVLSSLI--MIGRVHWINKEKL--IKFILDCQDTENGGISDRPDDAVDVYHTY 278

[Close]

BLAST of MELO3C018786.jh1 vs. NCBI nr
Match: XP_022135990.1 (geranylgeranyl transferase type-2 subunit beta 1-like [Momordica charantia] >XP_022135991.1 geranylgeranyl transferase type-2 subunit beta 1-like [Momordica charantia])

HSP 1 Score: 133 bits (335), Expect = 4.80e-35
Identity = 72/125 (57.60%), Postives = 80/125 (64.00%), Query Frame = 0


Query: 1   MDGGFGCTPGSAVMS--VFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKL 60
           MDGGFGCTPG    S  +FCCVG+LAI GSL HIDKDLLG WLCERQ+KSGG  GRPEKL
Sbjct: 163 MDGGFGCTPGGESHSGQIFCCVGALAITGSLHHIDKDLLGWWLCERQVKSGGLNGRPEKL 222

Query: 61  PECGFELLLHTLTNSWLGSYSYSPTHQLH------CVASVLLLTDTENGGISDRSDGAVD 117
           P+  +         SW    S     ++H       V  +L   DTENGGISDR D AVD
Sbjct: 223 PDVCY---------SWWVLSSLIMIDRVHWIDKEKLVKFILDCQDTENGGISDRPDDAVD 278

[Close]

BLAST of MELO3C018786.jh1 vs. ExPASy Swiss-Prot
Match: Q84J75 (Geranylgeranyl transferase type-2 subunit beta 1 OS=Arabidopsis thaliana OX=3702 GN=RGTB1 PE=1 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.2e-26
Identity = 62/125 (49.60%), Postives = 77/125 (61.60%), Query Frame = 0


Query: 1   MDGGFGCTPG--SAVMSVFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKL 60
           +DGGFGCTPG  S    +FCCVG+LAI GSL H+DKD LG WLCERQ+K+GG  GRPEKL
Sbjct: 171 LDGGFGCTPGAESHAGQIFCCVGALAITGSLHHVDKDSLGWWLCERQLKAGGLNGRPEKL 230

Query: 61  PECGFELLLHTLTNSWLGSYSYSPTHQLH------CVASVLLLTDTENGGISDRSDGAVD 118
            +  +         SW    S     ++H       V  +L   D +NGGISDR + AVD
Sbjct: 231 ADVCY---------SWWVLSSLIMIDRVHWIDKAKLVKFILDCQDLDNGGISDRPEDAVD 286

[Close]

BLAST of MELO3C018786.jh1 vs. ExPASy Swiss-Prot
Match: Q9LHL5 (Geranylgeranyl transferase type-2 subunit beta 2 OS=Arabidopsis thaliana OX=3702 GN=RGTB2 PE=1 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.9e-23
Identity = 59/126 (46.83%), Postives = 75/126 (59.52%), Query Frame = 0


Query: 1   MDGGFGCTPG--SAVMSVFCCVGSLAIMGSLQHIDKDLLGLWLCERQ-IKSGGPRGRPEK 60
           +DGGFGC+PG  S    +FCCVG+LAI G+L  +DKDLLG WLCERQ  +SGG  GRPEK
Sbjct: 166 LDGGFGCSPGAESHAGQIFCCVGALAITGNLHRVDKDLLGWWLCERQDYESGGLNGRPEK 225

Query: 61  LPECGFELLLHTLTNSWLGSYSYSPTHQLHCVASVLLL------TDTENGGISDRSDGAV 118
           LP+  +         SW    S     ++H +    L+       D +NGGISDR    V
Sbjct: 226 LPDVCY---------SWWVLSSLIMIDRVHWIEKAKLVKFILDSQDMDNGGISDRPSYTV 282

[Close]

BLAST of MELO3C018786.jh1 vs. ExPASy Swiss-Prot
Match: Q5E9B3 (Geranylgeranyl transferase type-2 subunit beta OS=Bos taurus OX=9913 GN=RABGGTB PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.7e-19
Identity = 52/123 (42.28%), Postives = 65/123 (52.85%), Query Frame = 0


Query: 2   DGGFGCTPGSA--VMSVFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLP 61
           DGGFGC PGS      ++CC G LAI   L  ++ DLLG WLCERQ+ SGG  GRPEKLP
Sbjct: 178 DGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLP 237

Query: 62  ECGFELLLHTLTNSWLGSYSYSPTHQLHCV------ASVLLLTDTENGGISDRSDGAVDV 117
           +  +         SW    S     +LH +      + +L   D E GG +DR    VD 
Sbjct: 238 DVCY---------SWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDP 291

[Close]

BLAST of MELO3C018786.jh1 vs. ExPASy Swiss-Prot
Match: P53612 (Geranylgeranyl transferase type-2 subunit beta OS=Mus musculus OX=10090 GN=Rabggtb PE=1 SV=2)

HSP 1 Score: 97.1 bits (240), Expect = 1.7e-19
Identity = 52/123 (42.28%), Postives = 65/123 (52.85%), Query Frame = 0


Query: 2   DGGFGCTPGSA--VMSVFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLP 61
           DGGFGC PGS      ++CC G LAI   L  ++ DLLG WLCERQ+ SGG  GRPEKLP
Sbjct: 186 DGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLP 245

Query: 62  ECGFELLLHTLTNSWLGSYSYSPTHQLHCV------ASVLLLTDTENGGISDRSDGAVDV 117
           +  +         SW    S     +LH +      + +L   D E GG +DR    VD 
Sbjct: 246 DVCY---------SWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDP 299

[Close]

BLAST of MELO3C018786.jh1 vs. ExPASy Swiss-Prot
Match: Q08603 (Geranylgeranyl transferase type-2 subunit beta OS=Rattus norvegicus OX=10116 GN=Rabggtb PE=1 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.7e-19
Identity = 52/123 (42.28%), Postives = 65/123 (52.85%), Query Frame = 0


Query: 2   DGGFGCTPGSA--VMSVFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLP 61
           DGGFGC PGS      ++CC G LAI   L  ++ DLLG WLCERQ+ SGG  GRPEKLP
Sbjct: 178 DGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLP 237

Query: 62  ECGFELLLHTLTNSWLGSYSYSPTHQLHCV------ASVLLLTDTENGGISDRSDGAVDV 117
           +  +         SW    S     +LH +      + +L   D E GG +DR    VD 
Sbjct: 238 DVCY---------SWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDP 291

[Close]

BLAST of MELO3C018786.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SQ05 (Geranylgeranyl transferase type-2 subunit beta-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003910 PE=4 SV=1)

HSP 1 Score: 186 bits (473), Expect = 1.37e-58
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 10  GSAVMSVFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECGFELLLHT 69
           GSAVMSVFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECGFELLLHT
Sbjct: 27  GSAVMSVFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECGFELLLHT 86

Query: 70  LTNSWLGSYSYSPTHQLHCVASVLLLT 96
           LTNSWLGSYSYSPTHQLHCVASVLLLT
Sbjct: 87  LTNSWLGSYSYSPTHQLHCVASVLLLT 113

[Close]

BLAST of MELO3C018786.jh1 vs. ExPASy TrEMBL
Match: A0A6J1C294 (Geranylgeranyl transferase type-2 subunit beta OS=Momordica charantia OX=3673 GN=LOC111007801 PE=3 SV=1)

HSP 1 Score: 133 bits (335), Expect = 2.32e-35
Identity = 72/125 (57.60%), Postives = 80/125 (64.00%), Query Frame = 0


Query: 1   MDGGFGCTPGSAVMS--VFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKL 60
           MDGGFGCTPG    S  +FCCVG+LAI GSL HIDKDLLG WLCERQ+KSGG  GRPEKL
Sbjct: 163 MDGGFGCTPGGESHSGQIFCCVGALAITGSLHHIDKDLLGWWLCERQVKSGGLNGRPEKL 222

Query: 61  PECGFELLLHTLTNSWLGSYSYSPTHQLH------CVASVLLLTDTENGGISDRSDGAVD 117
           P+  +         SW    S     ++H       V  +L   DTENGGISDR D AVD
Sbjct: 223 PDVCY---------SWWVLSSLIMIDRVHWIDKEKLVKFILDCQDTENGGISDRPDDAVD 278

[Close]

BLAST of MELO3C018786.jh1 vs. ExPASy TrEMBL
Match: A0A0A0K723 (Geranylgeranyl transferase type-2 subunit beta OS=Cucumis sativus OX=3659 GN=Csa_7G433280 PE=3 SV=1)

HSP 1 Score: 133 bits (334), Expect = 3.49e-35
Identity = 69/125 (55.20%), Postives = 81/125 (64.80%), Query Frame = 0


Query: 1   MDGGFGCTPGSAVMS--VFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKL 60
           MDGGFGCTPG    S  +FCCVG+LA+ GSL H+DKDLLG WLCERQ+KSGG  GRPEKL
Sbjct: 163 MDGGFGCTPGGESHSGQIFCCVGALALTGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKL 222

Query: 61  PECGFELLLHTLTNSWLGSYSYSPTHQLHCVASVLLLT------DTENGGISDRSDGAVD 117
           P+  +         SW    S     ++H ++   L+       DTENGGISDR D AVD
Sbjct: 223 PDVCY---------SWWVLSSLIMIDRVHWISKEKLIKFILDCQDTENGGISDRPDDAVD 278

[Close]

BLAST of MELO3C018786.jh1 vs. ExPASy TrEMBL
Match: A0A6M2EQ41 (Geranylgeranyl transferase type-2 subunit beta OS=Populus davidiana OX=266767 PE=3 SV=1)

HSP 1 Score: 130 bits (326), Expect = 3.82e-35
Identity = 68/125 (54.40%), Postives = 80/125 (64.00%), Query Frame = 0


Query: 1   MDGGFGCTPG--SAVMSVFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKL 60
           +DGGFGCTPG  S    +FCCVG+LAI GSL H+DKDLLG WLCERQ+KSGG  GRPEKL
Sbjct: 58  VDGGFGCTPGGESHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKL 117

Query: 61  PECGFELLLHTLTNSWLGSYSYSPTHQLHCVAS------VLLLTDTENGGISDRSDGAVD 117
           P+  +         SW    S     ++H +        +L   DTENGGISDR + AVD
Sbjct: 118 PDVCY---------SWWVLSSLIMIDRVHWINKDKLAKFILNCQDTENGGISDRPEDAVD 173

[Close]

BLAST of MELO3C018786.jh1 vs. ExPASy TrEMBL
Match: A0A6A1VGA1 (Geranylgeranyl transferase type-2 subunit beta OS=Morella rubra OX=262757 GN=CJ030_MR6G003924 PE=3 SV=1)

HSP 1 Score: 132 bits (332), Expect = 6.49e-35
Identity = 73/140 (52.14%), Postives = 86/140 (61.43%), Query Frame = 0


Query: 1   MDGGFGCTPG--SAVMSVFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKL 60
           +DGGFG TPG  S    +FCCVG+LAIMGSL HIDKDLLG WLCERQ++SGG  GRPEKL
Sbjct: 137 LDGGFGSTPGGESHAGQIFCCVGALAIMGSLHHIDKDLLGWWLCERQVQSGGLNGRPEKL 196

Query: 61  PECGFELLLHTLTNSWLGSYSYSPTHQLHCVASVLLLT------DTENGGISDRSDGAVD 120
           P+  +         SW    S     ++H ++   L+       DTENGGISDR D AVD
Sbjct: 197 PDVCY---------SWWVLSSLIMIDRVHWISKEKLIKYILDCQDTENGGISDRPDDAVD 256

Query: 121 VYHTYHTCLNRIFLSKKIVS 132
           VYHTY       FL K  +S
Sbjct: 257 VYHTYFGVAEFAFLPKAWMS 267

[Close]

BLAST of MELO3C018786.jh1 vs. TAIR 10
Match: AT5G12210.1 (RAB geranylgeranyl transferase beta subunit 1 )

HSP 1 Score: 119.4 bits (298), Expect = 2.3e-27
Identity = 62/125 (49.60%), Postives = 77/125 (61.60%), Query Frame = 0


Query: 1   MDGGFGCTPG--SAVMSVFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKL 60
           +DGGFGCTPG  S    +FCCVG+LAI GSL H+DKD LG WLCERQ+K+GG  GRPEKL
Sbjct: 171 LDGGFGCTPGAESHAGQIFCCVGALAITGSLHHVDKDSLGWWLCERQLKAGGLNGRPEKL 230

Query: 61  PECGFELLLHTLTNSWLGSYSYSPTHQLH------CVASVLLLTDTENGGISDRSDGAVD 118
            +  +         SW    S     ++H       V  +L   D +NGGISDR + AVD
Sbjct: 231 ADVCY---------SWWVLSSLIMIDRVHWIDKAKLVKFILDCQDLDNGGISDRPEDAVD 286

[Close]

BLAST of MELO3C018786.jh1 vs. TAIR 10
Match: AT5G12210.2 (RAB geranylgeranyl transferase beta subunit 1 )

HSP 1 Score: 119.4 bits (298), Expect = 2.3e-27
Identity = 62/125 (49.60%), Postives = 77/125 (61.60%), Query Frame = 0


Query: 1   MDGGFGCTPG--SAVMSVFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKL 60
           +DGGFGCTPG  S    +FCCVG+LAI GSL H+DKD LG WLCERQ+K+GG  GRPEKL
Sbjct: 170 LDGGFGCTPGAESHAGQIFCCVGALAITGSLHHVDKDSLGWWLCERQLKAGGLNGRPEKL 229

Query: 61  PECGFELLLHTLTNSWLGSYSYSPTHQLH------CVASVLLLTDTENGGISDRSDGAVD 118
            +  +         SW    S     ++H       V  +L   D +NGGISDR + AVD
Sbjct: 230 ADVCY---------SWWVLSSLIMIDRVHWIDKAKLVKFILDCQDLDNGGISDRPEDAVD 285

[Close]

BLAST of MELO3C018786.jh1 vs. TAIR 10
Match: AT3G12070.1 (RAB geranylgeranyl transferase beta subunit 2 )

HSP 1 Score: 110.2 bits (274), Expect = 1.4e-24
Identity = 59/126 (46.83%), Postives = 75/126 (59.52%), Query Frame = 0


Query: 1   MDGGFGCTPG--SAVMSVFCCVGSLAIMGSLQHIDKDLLGLWLCERQ-IKSGGPRGRPEK 60
           +DGGFGC+PG  S    +FCCVG+LAI G+L  +DKDLLG WLCERQ  +SGG  GRPEK
Sbjct: 166 LDGGFGCSPGAESHAGQIFCCVGALAITGNLHRVDKDLLGWWLCERQDYESGGLNGRPEK 225

Query: 61  LPECGFELLLHTLTNSWLGSYSYSPTHQLHCVASVLLL------TDTENGGISDRSDGAV 118
           LP+  +         SW    S     ++H +    L+       D +NGGISDR    V
Sbjct: 226 LPDVCY---------SWWVLSSLIMIDRVHWIEKAKLVKFILDSQDMDNGGISDRPSYTV 282

[Close]

BLAST of MELO3C018786.jh1 vs. TAIR 10
Match: AT3G12070.2 (RAB geranylgeranyl transferase beta subunit 2 )

HSP 1 Score: 110.2 bits (274), Expect = 1.4e-24
Identity = 59/126 (46.83%), Postives = 75/126 (59.52%), Query Frame = 0


Query: 1   MDGGFGCTPG--SAVMSVFCCVGSLAIMGSLQHIDKDLLGLWLCERQ-IKSGGPRGRPEK 60
           +DGGFGC+PG  S    +FCCVG+LAI G+L  +DKDLLG WLCERQ  +SGG  GRPEK
Sbjct: 166 LDGGFGCSPGAESHAGQIFCCVGALAITGNLHRVDKDLLGWWLCERQDYESGGLNGRPEK 225

Query: 61  LPECGFELLLHTLTNSWLGSYSYSPTHQLHCVASVLLL------TDTENGGISDRSDGAV 118
           LP+  +         SW    S     ++H +    L+       D +NGGISDR    V
Sbjct: 226 LPDVCY---------SWWVLSSLIMIDRVHWIEKAKLVKFILDSQDMDNGGISDRPSYTV 282

The following BLAST results are available for this feature:

BLAST of MELO3C018786.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031621.1	2.82e-58	100.00	geranylgeranyl transferase type-2 subunit beta-like [Cucumis melo var. makuwa] >...	[more]
XP_038887312.1	2.48e-36	60.83	geranylgeranyl transferase type-2 subunit beta 1-like isoform X3 [Benincasa hisp...	[more]
XP_038887310.1	3.38e-36	60.83	geranylgeranyl transferase type-2 subunit beta 1-like isoform X2 [Benincasa hisp...	[more]
XP_038887307.1	6.14e-36	60.83	geranylgeranyl transferase type-2 subunit beta 1-like isoform X1 [Benincasa hisp...	[more]
XP_022135990.1	4.80e-35	57.60	geranylgeranyl transferase type-2 subunit beta 1-like [Momordica charantia] >XP_...	[more]

BLAST of MELO3C018786.jh1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84J75	3.2e-26	49.60	Geranylgeranyl transferase type-2 subunit beta 1 OS=Arabidopsis thaliana OX=3702...	[more]
Q9LHL5	1.9e-23	46.83	Geranylgeranyl transferase type-2 subunit beta 2 OS=Arabidopsis thaliana OX=3702...	[more]
Q5E9B3	1.7e-19	42.28	Geranylgeranyl transferase type-2 subunit beta OS=Bos taurus OX=9913 GN=RABGGTB ...	[more]
P53612	1.7e-19	42.28	Geranylgeranyl transferase type-2 subunit beta OS=Mus musculus OX=10090 GN=Rabgg...	[more]
Q08603	1.7e-19	42.28	Geranylgeranyl transferase type-2 subunit beta OS=Rattus norvegicus OX=10116 GN=...	[more]

BLAST of MELO3C018786.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SQ05	1.37e-58	100.00	Geranylgeranyl transferase type-2 subunit beta-like OS=Cucumis melo var. makuwa ...	[more]
A0A6J1C294	2.32e-35	57.60	Geranylgeranyl transferase type-2 subunit beta OS=Momordica charantia OX=3673 GN...	[more]
A0A0A0K723	3.49e-35	55.20	Geranylgeranyl transferase type-2 subunit beta OS=Cucumis sativus OX=3659 GN=Csa...	[more]
A0A6M2EQ41	3.82e-35	54.40	Geranylgeranyl transferase type-2 subunit beta OS=Populus davidiana OX=266767 PE...	[more]
A0A6A1VGA1	6.49e-35	52.14	Geranylgeranyl transferase type-2 subunit beta OS=Morella rubra OX=262757 GN=CJ0...	[more]

BLAST of MELO3C018786.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G12210.1	2.3e-27	49.60	RAB geranylgeranyl transferase beta subunit 1	[more]
AT5G12210.2	2.3e-27	49.60	RAB geranylgeranyl transferase beta subunit 1	[more]
AT3G12070.1	1.4e-24	46.83	RAB geranylgeranyl transferase beta subunit 2	[more]
AT3G12070.2	1.4e-24	46.83	RAB geranylgeranyl transferase beta subunit 2	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.50.10.20		coord: 1..132 e-value: 3.9E-21 score: 77.3
None	No IPR available	PANTHER	PTHR11774:SF13	GERANYLGERANYL TRANSFERASE TYPE-2 SUBUNIT BETA	coord: 1..119
IPR045089	Prenyltransferase subunit beta	PANTHER	PTHR11774	GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNIT	coord: 1..119
IPR008930	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid	SUPERFAMILY	48239	Terpenoid cyclases/Protein prenyltransferases	coord: 2..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C018786.jh1.t1	MELO3C018786.jh1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008318	protein prenyltransferase activity