MELO3C018751 (gene) Melon (DHL92) v4

Overview


Name	MELO3C018751
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Pentatricopeptide repeat-containing protein
Location	chr01: 2596396 .. 2596991 (+)
RNA-Seq Expression	MELO3C018751
Synteny	MELO3C018751

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAAGAAGGTTGTGATCAAACAGTTTATACGTTCACGATTCTTATCGATGGGCTGTTCAAGGAGCACAAAAATGAGGAGGCAATAAAGTTATGGGACAAGATGATCGACAAAGGAATCACTCCAACTGTAGCTTCTTTTAGAGCTCTTGCCATAGGGCTGTGTCTTTGTGGCAAGGTAGCCAGGGCTTGCAAAATCTTGGATGACCTTGCCCCAATGGGTATCATTCCCGAAACGGCATTTGAGGATATGATCAATACATTGTGCAAAGCACAACGCATCAAGGAAGCTTGCAAATTGGCCGATGGAATTGTGGATCGGGGTAGGGAAATACCGGGGAGAATACGTACAGTTCTTATCAATGCCTTGAGAAAGGCAGGTAATTCTGATTTGGTCATCAAACTGATGCATAGTAAGATAGGCATAGGATATGATCGGATGGGTAGTATTAAAAGACGAGTTAAGTTCAGAACACTTCTTGAAAATTGAGTTCTCATCTCTGGTGCCTTTATTCACATTTTTGTCCTCAATGACTTTCATATCCTATTTTTAACTCTTGCAATGACTATCACAAGTTTTATTTTGTTCATAGT

mRNA sequence

ATGGAAGAAGAAGGTTGTGATCAAACAGTTTATACGTTCACGATTCTTATCGATGGGCTGTTCAAGGAGCACAAAAATGAGGAGGCAATAAAGTTATGGGACAAGATGATCGACAAAGGAATCACTCCAACTGTAGCTTCTTTTAGAGCTCTTGCCATAGGGCTGTGTCTTTGTGGCAAGGTAGCCAGGGCTTGCAAAATCTTGGATGACCTTGCCCCAATGGGTATCATTCCCGAAACGGCATTTGAGGATATGATCAATACATTGTGCAAAGCACAACGCATCAAGGAAGCTTGCAAATTGGCCGATGGAATTGTGGATCGGGGTAGGGAAATACCGGGGAGAATACGTACAGTTCTTATCAATGCCTTGAGAAAGGCAGGTAATTCTGATTTGGTCATCAAACTGATGCATAGTAAGATAGGCATAGGATATGATCGGATGGGTAGTATTAAAAGACGAGTTAAGTTCAGAACACTTCTTGAAAATTGAGTTCTCATCTCTGGTGCCTTTATTCACATTTTTGTCCTCAATGACTTTCATATCCTATTTTTAACTCTTGCAATGACTATCACAAGTTTTATTTTGTTCATAGT

Coding sequence (CDS)

ATGGAAGAAGAAGGTTGTGATCAAACAGTTTATACGTTCACGATTCTTATCGATGGGCTGTTCAAGGAGCACAAAAATGAGGAGGCAATAAAGTTATGGGACAAGATGATCGACAAAGGAATCACTCCAACTGTAGCTTCTTTTAGAGCTCTTGCCATAGGGCTGTGTCTTTGTGGCAAGGTAGCCAGGGCTTGCAAAATCTTGGATGACCTTGCCCCAATGGGTATCATTCCCGAAACGGCATTTGAGGATATGATCAATACATTGTGCAAAGCACAACGCATCAAGGAAGCTTGCAAATTGGCCGATGGAATTGTGGATCGGGGTAGGGAAATACCGGGGAGAATACGTACAGTTCTTATCAATGCCTTGAGAAAGGCAGGTAATTCTGATTTGGTCATCAAACTGATGCATAGTAAGATAGGCATAGGATATGATCGGATGGGTAGTATTAAAAGACGAGTTAAGTTCAGAACACTTCTTGAAAATTGA

Protein sequence

MEEEGCDQTVYTFTILIDGLFKEHKNEEAIKLWDKMIDKGITPTVASFRALAIGLCLCGKVARACKILDDLAPMGIIPETAFEDMINTLCKAQRIKEACKLADGIVDRGREIPGRIRTVLINALRKAGNSDLVIKLMHSKIGIGYDRMGSIKRRVKFRTLLEN

Homology

[Close]

BLAST of MELO3C018751 vs. NCBI nr
Match: KAA0031588.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK07040.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 330.1 bits (845), Expect = 1.1e-86
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MEEEGCDQTVYTFTILIDGLFKEHKNEEAIKLWDKMIDKGITPTVASFRALAIGLCLCGK 60
           MEEEGCDQTVYTFTILIDGLFKEHKNEEAIKLWDKMIDKGITPTVASFRALAIGLCLCGK
Sbjct: 491 MEEEGCDQTVYTFTILIDGLFKEHKNEEAIKLWDKMIDKGITPTVASFRALAIGLCLCGK 550

Query: 61  VARACKILDDLAPMGIIPETAFEDMINTLCKAQRIKEACKLADGIVDRGREIPGRIRTVL 120
           VARACKILDDLAPMGIIPETAFEDMINTLCKAQRIKEACKLADGIVDRGREIPGRIRTVL
Sbjct: 551 VARACKILDDLAPMGIIPETAFEDMINTLCKAQRIKEACKLADGIVDRGREIPGRIRTVL 610

Query: 121 INALRKAGNSDLVIKLMHSKIGIGYDRMGSIKRRVKFRTLLEN 164
           INALRKAGNSDLVIKLMHSKIGIGYDRMGSIKRRVKFRTLLEN
Sbjct: 611 INALRKAGNSDLVIKLMHSKIGIGYDRMGSIKRRVKFRTLLEN 653

[Close]

BLAST of MELO3C018751 vs. NCBI nr
Match: XP_008455340.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g03560, mitochondrial [Cucumis melo])

HSP 1 Score: 330.1 bits (845), Expect = 1.1e-86
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MEEEGCDQTVYTFTILIDGLFKEHKNEEAIKLWDKMIDKGITPTVASFRALAIGLCLCGK 60
           MEEEGCDQTVYTFTILIDGLFKEHKNEEAIKLWDKMIDKGITPTVASFRALAIGLCLCGK
Sbjct: 491 MEEEGCDQTVYTFTILIDGLFKEHKNEEAIKLWDKMIDKGITPTVASFRALAIGLCLCGK 550

Query: 61  VARACKILDDLAPMGIIPETAFEDMINTLCKAQRIKEACKLADGIVDRGREIPGRIRTVL 120
           VARACKILDDLAPMGIIPETAFEDMINTLCKAQRIKEACKLADGIVDRGREIPGRIRTVL
Sbjct: 551 VARACKILDDLAPMGIIPETAFEDMINTLCKAQRIKEACKLADGIVDRGREIPGRIRTVL 610

Query: 121 INALRKAGNSDLVIKLMHSKIGIGYDRMGSIKRRVKFRTLLEN 164
           INALRKAGNSDLVIKLMHSKIGIGYDRMGSIKRRVKFRTLLEN
Sbjct: 611 INALRKAGNSDLVIKLMHSKIGIGYDRMGSIKRRVKFRTLLEN 653

[Close]

BLAST of MELO3C018751 vs. NCBI nr
Match: XP_004137016.2 (pentatricopeptide repeat-containing protein At1g03560, mitochondrial [Cucumis sativus])

HSP 1 Score: 328.6 bits (841), Expect = 3.1e-86
Identity = 162/163 (99.39%), Postives = 162/163 (99.39%), Query Frame = 0


Query: 1   MEEEGCDQTVYTFTILIDGLFKEHKNEEAIKLWDKMIDKGITPTVASFRALAIGLCLCGK 60
           MEEEGCDQTVYTFTILIDGLFKEHKNEEAIK WDKMIDKGITPTVASFRALAIGLCLCGK
Sbjct: 491 MEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRALAIGLCLCGK 550

Query: 61  VARACKILDDLAPMGIIPETAFEDMINTLCKAQRIKEACKLADGIVDRGREIPGRIRTVL 120
           VARACKILDDLAPMGIIPETAFEDMINTLCKAQRIKEACKLADGIVDRGREIPGRIRTVL
Sbjct: 551 VARACKILDDLAPMGIIPETAFEDMINTLCKAQRIKEACKLADGIVDRGREIPGRIRTVL 610

Query: 121 INALRKAGNSDLVIKLMHSKIGIGYDRMGSIKRRVKFRTLLEN 164
           INALRKAGNSDLVIKLMHSKIGIGYDRMGSIKRRVKFRTLLEN
Sbjct: 611 INALRKAGNSDLVIKLMHSKIGIGYDRMGSIKRRVKFRTLLEN 653

[Close]

BLAST of MELO3C018751 vs. NCBI nr
Match: XP_038888300.1 (pentatricopeptide repeat-containing protein At1g03560, mitochondrial [Benincasa hispida])

HSP 1 Score: 320.9 bits (821), Expect = 6.5e-84
Identity = 156/163 (95.71%), Postives = 161/163 (98.77%), Query Frame = 0


Query: 1   MEEEGCDQTVYTFTILIDGLFKEHKNEEAIKLWDKMIDKGITPTVASFRALAIGLCLCGK 60
           MEEEGCDQTVYT+TILIDGLFKEH+NEEAIKLWD MIDKGITPTVASFRALAIGLCLCGK
Sbjct: 495 MEEEGCDQTVYTYTILIDGLFKEHRNEEAIKLWDTMIDKGITPTVASFRALAIGLCLCGK 554

Query: 61  VARACKILDDLAPMGIIPETAFEDMINTLCKAQRIKEACKLADGIVDRGREIPGRIRTVL 120
           VARACKILDDLAPMG+IPETAFEDMINTLCKA+RIKEACKLADGIVDRGREIPGRIRTVL
Sbjct: 555 VARACKILDDLAPMGLIPETAFEDMINTLCKARRIKEACKLADGIVDRGREIPGRIRTVL 614

Query: 121 INALRKAGNSDLVIKLMHSKIGIGYDRMGSIKRRVKFRTLLEN 164
           INALRKAGNSDL IKLMHSKIGIGYDRMGSIKRRVKFRTL+EN
Sbjct: 615 INALRKAGNSDLAIKLMHSKIGIGYDRMGSIKRRVKFRTLIEN 657

[Close]

BLAST of MELO3C018751 vs. NCBI nr
Match: KAG7011962.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 317.4 bits (812), Expect = 7.2e-83
Identity = 153/163 (93.87%), Postives = 159/163 (97.55%), Query Frame = 0


Query: 1   MEEEGCDQTVYTFTILIDGLFKEHKNEEAIKLWDKMIDKGITPTVASFRALAIGLCLCGK 60
           MEEEGCDQTVYT+TILIDGLFKEH+NEEAIKLWD MIDKGITPTVASFRALAIGLCLCGK
Sbjct: 495 MEEEGCDQTVYTYTILIDGLFKEHRNEEAIKLWDTMIDKGITPTVASFRALAIGLCLCGK 554

Query: 61  VARACKILDDLAPMGIIPETAFEDMINTLCKAQRIKEACKLADGIVDRGREIPGRIRTVL 120
           VARACKILDDLAPMG+IPETAFEDMIN LCKA+R+KEACKLADGIVDRGREIPGRIRTVL
Sbjct: 555 VARACKILDDLAPMGVIPETAFEDMINALCKARRVKEACKLADGIVDRGREIPGRIRTVL 614

Query: 121 INALRKAGNSDLVIKLMHSKIGIGYDRMGSIKRRVKFRTLLEN 164
           IN LRKAGNSDL IKLMHSKIGIGYDRMGSIKRRVKFRTL+EN
Sbjct: 615 INGLRKAGNSDLAIKLMHSKIGIGYDRMGSIKRRVKFRTLIEN 657

[Close]

BLAST of MELO3C018751 vs. ExPASy Swiss-Prot
Match: Q9LR67 (Pentatricopeptide repeat-containing protein At1g03560, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g03560 PE=2 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 4.1e-73
Identity = 130/161 (80.75%), Postives = 146/161 (90.68%), Query Frame = 0


Query: 2   EEEGCDQTVYTFTILIDGLFKEHKNEEAIKLWDKMIDKGITPTVASFRALAIGLCLCGKV 61
           EEEGCDQTVYT+TIL+ G+FKEH+NEEA+KLWD MIDKGITPT A FRAL+ GLCL GKV
Sbjct: 495 EEEGCDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGKV 554

Query: 62  ARACKILDDLAPMGIIPETAFEDMINTLCKAQRIKEACKLADGIVDRGREIPGRIRTVLI 121
           ARACKILD+LAPMG+I + A EDMINTLCKA RIKEACKLADGI +RGRE+PGRIRTV+I
Sbjct: 555 ARACKILDELAPMGVILDAACEDMINTLCKAGRIKEACKLADGITERGREVPGRIRTVMI 614

Query: 122 NALRKAGNSDLVIKLMHSKIGIGYDRMGSIKRRVKFRTLLE 163
           NALRK G +DL +KLMHSKIGIGY+RMGS+KRRVKF TLLE
Sbjct: 615 NALRKVGKADLAMKLMHSKIGIGYERMGSVKRRVKFTTLLE 655

[Close]

BLAST of MELO3C018751 vs. ExPASy Swiss-Prot
Match: O49436 (Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana OX=3702 GN=EMB1025 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.0e-14
Identity = 45/137 (32.85%), Postives = 71/137 (51.82%), Query Frame = 0


Query: 1   MEEEGCDQTVYTFTILIDGLFKEHKNEEAIKLWDKMIDKGITPTVASFRALAIGLCLCGK 60
           M+ EGC  +   + +LIDGL K+       KL D M  KG  P   ++  L  GLCL GK
Sbjct: 248 MQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGK 307

Query: 61  VARACKILDDLAPMGIIP-ETAFEDMINTLCKAQRIKEACKLADGIVDRGREIPGRIRTV 120
           + +A  +L+ +     IP +  +  +IN L K +R  +A +L   + +RG  +   I +V
Sbjct: 308 LDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSV 367

Query: 121 LINALRKAGNSDLVIKL 137
           LI+ L K G ++  + L
Sbjct: 368 LISGLFKEGKAEEAMSL 384

[Close]

BLAST of MELO3C018751 vs. ExPASy Swiss-Prot
Match: O04504 (Pentatricopeptide repeat-containing protein At1g09820 OS=Arabidopsis thaliana OX=3702 GN=At1g09820 PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.8e-13
Identity = 41/132 (31.06%), Postives = 68/132 (51.52%), Query Frame = 0


Query: 1   MEEEGCDQTVYTFTILIDGLFKEHKNEEAIKLWDKMIDKGITPTVASFRALAIGLCLCGK 60
           M E      + TF ILIDG +K+     ++K++ +M+D+ + P V S+ +L  GLC  GK
Sbjct: 287 MVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGK 346

Query: 61  VARACKILDDLAPMGIIPE-TAFEDMINTLCKAQRIKEACKLADGIVDRGREIPGRIRTV 120
           ++ A  + D +   G+ P    +  +IN  CK   +KEA  +   +  +G     R+  +
Sbjct: 347 ISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNM 406

Query: 121 LINALRKAGNSD 132
           LI+A  K G  D
Sbjct: 407 LIDAYCKLGKID 418

[Close]

BLAST of MELO3C018751 vs. ExPASy Swiss-Prot
Match: Q9SI78 (Pentatricopeptide repeat-containing protein At1g62720 OS=Arabidopsis thaliana OX=3702 GN=At1g62720 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.1e-12
Identity = 41/123 (33.33%), Postives = 66/123 (53.66%), Query Frame = 0


Query: 10  VYTFTILIDGLFKEHKNEEAIKLWDKMIDKGITPTVASFRALAIGLCLCGKVARACKILD 69
           V TFT +ID   KE K  EA+KL+++M  + + P V ++ +L  GLC+ G+V  A ++LD
Sbjct: 244 VITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLD 303

Query: 70  DLAPMGIIPE-TAFEDMINTLCKAQRIKEACKLADGIVDRGREIPGRIRTVLINALRKAG 129
            +   G +P+   +  +IN  CK++R+ E  KL   +  RG          +I    +AG
Sbjct: 304 LMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAG 363

Query: 130 NSD 132
             D
Sbjct: 364 RPD 366

[Close]

BLAST of MELO3C018751 vs. ExPASy Swiss-Prot
Match: Q9LFF1 (Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MEE40 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.9e-12
Identity = 41/140 (29.29%), Postives = 70/140 (50.00%), Query Frame = 0


Query: 1   MEEEGCDQTVYTFTILIDGLFKEHKNEEAIKLWDKMIDKGITPTVASFRALAIGLCLCGK 60
           ME  GC ++V T+  LIDG  K +K  EA +++D+M   G++    ++  L  GLC   +
Sbjct: 461 MELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRR 520

Query: 61  VARACKILDDLAPMGIIPET-AFEDMINTLCKAQRIKEACKLADGIVDRGREIPGRIRTV 120
           V  A +++D +   G  P+   +  ++   C+   IK+A  +   +   G E        
Sbjct: 521 VEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGT 580

Query: 121 LINALRKAGNSDLVIKLMHS 140
           LI+ L KAG  ++  KL+ S
Sbjct: 581 LISGLCKAGRVEVASKLLRS 600

[Close]

BLAST of MELO3C018751 vs. ExPASy TrEMBL
Match: A0A5D3C6T2 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003580 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 5.2e-87
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MEEEGCDQTVYTFTILIDGLFKEHKNEEAIKLWDKMIDKGITPTVASFRALAIGLCLCGK 60
           MEEEGCDQTVYTFTILIDGLFKEHKNEEAIKLWDKMIDKGITPTVASFRALAIGLCLCGK
Sbjct: 491 MEEEGCDQTVYTFTILIDGLFKEHKNEEAIKLWDKMIDKGITPTVASFRALAIGLCLCGK 550

Query: 61  VARACKILDDLAPMGIIPETAFEDMINTLCKAQRIKEACKLADGIVDRGREIPGRIRTVL 120
           VARACKILDDLAPMGIIPETAFEDMINTLCKAQRIKEACKLADGIVDRGREIPGRIRTVL
Sbjct: 551 VARACKILDDLAPMGIIPETAFEDMINTLCKAQRIKEACKLADGIVDRGREIPGRIRTVL 610

Query: 121 INALRKAGNSDLVIKLMHSKIGIGYDRMGSIKRRVKFRTLLEN 164
           INALRKAGNSDLVIKLMHSKIGIGYDRMGSIKRRVKFRTLLEN
Sbjct: 611 INALRKAGNSDLVIKLMHSKIGIGYDRMGSIKRRVKFRTLLEN 653

[Close]

BLAST of MELO3C018751 vs. ExPASy TrEMBL
Match: A0A1S3C0U2 (pentatricopeptide repeat-containing protein At1g03560, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103495528 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 5.2e-87
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MEEEGCDQTVYTFTILIDGLFKEHKNEEAIKLWDKMIDKGITPTVASFRALAIGLCLCGK 60
           MEEEGCDQTVYTFTILIDGLFKEHKNEEAIKLWDKMIDKGITPTVASFRALAIGLCLCGK
Sbjct: 491 MEEEGCDQTVYTFTILIDGLFKEHKNEEAIKLWDKMIDKGITPTVASFRALAIGLCLCGK 550

Query: 61  VARACKILDDLAPMGIIPETAFEDMINTLCKAQRIKEACKLADGIVDRGREIPGRIRTVL 120
           VARACKILDDLAPMGIIPETAFEDMINTLCKAQRIKEACKLADGIVDRGREIPGRIRTVL
Sbjct: 551 VARACKILDDLAPMGIIPETAFEDMINTLCKAQRIKEACKLADGIVDRGREIPGRIRTVL 610

Query: 121 INALRKAGNSDLVIKLMHSKIGIGYDRMGSIKRRVKFRTLLEN 164
           INALRKAGNSDLVIKLMHSKIGIGYDRMGSIKRRVKFRTLLEN
Sbjct: 611 INALRKAGNSDLVIKLMHSKIGIGYDRMGSIKRRVKFRTLLEN 653

[Close]

BLAST of MELO3C018751 vs. ExPASy TrEMBL
Match: A0A0A0K5P5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047320 PE=4 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 1.5e-86
Identity = 162/163 (99.39%), Postives = 162/163 (99.39%), Query Frame = 0


Query: 1   MEEEGCDQTVYTFTILIDGLFKEHKNEEAIKLWDKMIDKGITPTVASFRALAIGLCLCGK 60
           MEEEGCDQTVYTFTILIDGLFKEHKNEEAIK WDKMIDKGITPTVASFRALAIGLCLCGK
Sbjct: 491 MEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRALAIGLCLCGK 550

Query: 61  VARACKILDDLAPMGIIPETAFEDMINTLCKAQRIKEACKLADGIVDRGREIPGRIRTVL 120
           VARACKILDDLAPMGIIPETAFEDMINTLCKAQRIKEACKLADGIVDRGREIPGRIRTVL
Sbjct: 551 VARACKILDDLAPMGIIPETAFEDMINTLCKAQRIKEACKLADGIVDRGREIPGRIRTVL 610

Query: 121 INALRKAGNSDLVIKLMHSKIGIGYDRMGSIKRRVKFRTLLEN 164
           INALRKAGNSDLVIKLMHSKIGIGYDRMGSIKRRVKFRTLLEN
Sbjct: 611 INALRKAGNSDLVIKLMHSKIGIGYDRMGSIKRRVKFRTLLEN 653

[Close]

BLAST of MELO3C018751 vs. ExPASy TrEMBL
Match: A0A6J1GLU6 (pentatricopeptide repeat-containing protein At1g03560, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111455532 PE=4 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 4.6e-83
Identity = 153/163 (93.87%), Postives = 159/163 (97.55%), Query Frame = 0


Query: 1   MEEEGCDQTVYTFTILIDGLFKEHKNEEAIKLWDKMIDKGITPTVASFRALAIGLCLCGK 60
           MEEEGCDQTVYT+TILIDGLFKEH+NEEAIKLWD MIDKGITPTVASFRALAIGLCLCGK
Sbjct: 495 MEEEGCDQTVYTYTILIDGLFKEHRNEEAIKLWDTMIDKGITPTVASFRALAIGLCLCGK 554

Query: 61  VARACKILDDLAPMGIIPETAFEDMINTLCKAQRIKEACKLADGIVDRGREIPGRIRTVL 120
           VARACKILDDLAPMG+IPETAFEDMIN LCKA+R+KEACKLADGIVDRGREIPGRIRTVL
Sbjct: 555 VARACKILDDLAPMGVIPETAFEDMINALCKARRVKEACKLADGIVDRGREIPGRIRTVL 614

Query: 121 INALRKAGNSDLVIKLMHSKIGIGYDRMGSIKRRVKFRTLLEN 164
           IN LRKAGNSDL IKLMHSKIGIGYDRMGSIKRRVKFRTL+EN
Sbjct: 615 INGLRKAGNSDLAIKLMHSKIGIGYDRMGSIKRRVKFRTLVEN 657

[Close]

BLAST of MELO3C018751 vs. ExPASy TrEMBL
Match: A0A6J1I1D4 (pentatricopeptide repeat-containing protein At1g03560, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111468147 PE=4 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 1.0e-82
Identity = 153/163 (93.87%), Postives = 158/163 (96.93%), Query Frame = 0


Query: 1   MEEEGCDQTVYTFTILIDGLFKEHKNEEAIKLWDKMIDKGITPTVASFRALAIGLCLCGK 60
           MEEEGCDQTVYT+TILIDGLFKEH+NEEAIKLWD MIDKGITPTVASFRALAIGLCLCGK
Sbjct: 495 MEEEGCDQTVYTYTILIDGLFKEHRNEEAIKLWDTMIDKGITPTVASFRALAIGLCLCGK 554

Query: 61  VARACKILDDLAPMGIIPETAFEDMINTLCKAQRIKEACKLADGIVDRGREIPGRIRTVL 120
           VARACKILDDLAPMG+IPETAFEDMIN LCKA+R KEACKLADGIVDRGREIPGRIRTVL
Sbjct: 555 VARACKILDDLAPMGVIPETAFEDMINALCKARRFKEACKLADGIVDRGREIPGRIRTVL 614

Query: 121 INALRKAGNSDLVIKLMHSKIGIGYDRMGSIKRRVKFRTLLEN 164
           IN LRKAGNSDL IKLMHSKIGIGYDRMGSIKRRVKFRTL+EN
Sbjct: 615 INGLRKAGNSDLAIKLMHSKIGIGYDRMGSIKRRVKFRTLVEN 657

[Close]

BLAST of MELO3C018751 vs. TAIR 10
Match: AT1G03560.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 275.4 bits (703), Expect = 2.9e-74
Identity = 130/161 (80.75%), Postives = 146/161 (90.68%), Query Frame = 0


Query: 2   EEEGCDQTVYTFTILIDGLFKEHKNEEAIKLWDKMIDKGITPTVASFRALAIGLCLCGKV 61
           EEEGCDQTVYT+TIL+ G+FKEH+NEEA+KLWD MIDKGITPT A FRAL+ GLCL GKV
Sbjct: 495 EEEGCDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGKV 554

Query: 62  ARACKILDDLAPMGIIPETAFEDMINTLCKAQRIKEACKLADGIVDRGREIPGRIRTVLI 121
           ARACKILD+LAPMG+I + A EDMINTLCKA RIKEACKLADGI +RGRE+PGRIRTV+I
Sbjct: 555 ARACKILDELAPMGVILDAACEDMINTLCKAGRIKEACKLADGITERGREVPGRIRTVMI 614

Query: 122 NALRKAGNSDLVIKLMHSKIGIGYDRMGSIKRRVKFRTLLE 163
           NALRK G +DL +KLMHSKIGIGY+RMGS+KRRVKF TLLE
Sbjct: 615 NALRKVGKADLAMKLMHSKIGIGYERMGSVKRRVKFTTLLE 655

[Close]

BLAST of MELO3C018751 vs. TAIR 10
Match: AT4G20090.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 80.5 bits (197), Expect = 1.4e-15
Identity = 45/137 (32.85%), Postives = 71/137 (51.82%), Query Frame = 0


Query: 1   MEEEGCDQTVYTFTILIDGLFKEHKNEEAIKLWDKMIDKGITPTVASFRALAIGLCLCGK 60
           M+ EGC  +   + +LIDGL K+       KL D M  KG  P   ++  L  GLCL GK
Sbjct: 248 MQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGK 307

Query: 61  VARACKILDDLAPMGIIP-ETAFEDMINTLCKAQRIKEACKLADGIVDRGREIPGRIRTV 120
           + +A  +L+ +     IP +  +  +IN L K +R  +A +L   + +RG  +   I +V
Sbjct: 308 LDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSV 367

Query: 121 LINALRKAGNSDLVIKL 137
           LI+ L K G ++  + L
Sbjct: 368 LISGLFKEGKAEEAMSL 384

[Close]

BLAST of MELO3C018751 vs. TAIR 10
Match: AT1G09820.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 75.9 bits (185), Expect = 3.4e-14
Identity = 41/132 (31.06%), Postives = 68/132 (51.52%), Query Frame = 0


Query: 1   MEEEGCDQTVYTFTILIDGLFKEHKNEEAIKLWDKMIDKGITPTVASFRALAIGLCLCGK 60
           M E      + TF ILIDG +K+     ++K++ +M+D+ + P V S+ +L  GLC  GK
Sbjct: 287 MVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGK 346

Query: 61  VARACKILDDLAPMGIIPE-TAFEDMINTLCKAQRIKEACKLADGIVDRGREIPGRIRTV 120
           ++ A  + D +   G+ P    +  +IN  CK   +KEA  +   +  +G     R+  +
Sbjct: 347 ISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNM 406

Query: 121 LINALRKAGNSD 132
           LI+A  K G  D
Sbjct: 407 LIDAYCKLGKID 418

[Close]

BLAST of MELO3C018751 vs. TAIR 10
Match: AT1G62720.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 72.8 bits (177), Expect = 2.9e-13
Identity = 41/123 (33.33%), Postives = 66/123 (53.66%), Query Frame = 0


Query: 10  VYTFTILIDGLFKEHKNEEAIKLWDKMIDKGITPTVASFRALAIGLCLCGKVARACKILD 69
           V TFT +ID   KE K  EA+KL+++M  + + P V ++ +L  GLC+ G+V  A ++LD
Sbjct: 244 VITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLD 303

Query: 70  DLAPMGIIPE-TAFEDMINTLCKAQRIKEACKLADGIVDRGREIPGRIRTVLINALRKAG 129
            +   G +P+   +  +IN  CK++R+ E  KL   +  RG          +I    +AG
Sbjct: 304 LMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAG 363

Query: 130 NSD 132
             D
Sbjct: 364 RPD 366

[Close]

BLAST of MELO3C018751 vs. TAIR 10
Match: AT3G53700.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 72.0 bits (175), Expect = 4.9e-13
Identity = 41/140 (29.29%), Postives = 70/140 (50.00%), Query Frame = 0


Query: 1   MEEEGCDQTVYTFTILIDGLFKEHKNEEAIKLWDKMIDKGITPTVASFRALAIGLCLCGK 60
           ME  GC ++V T+  LIDG  K +K  EA +++D+M   G++    ++  L  GLC   +
Sbjct: 461 MELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRR 520

Query: 61  VARACKILDDLAPMGIIPET-AFEDMINTLCKAQRIKEACKLADGIVDRGREIPGRIRTV 120
           V  A +++D +   G  P+   +  ++   C+   IK+A  +   +   G E        
Sbjct: 521 VEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGT 580

Query: 121 LINALRKAGNSDLVIKLMHS 140
           LI+ L KAG  ++  KL+ S
Sbjct: 581 LISGLCKAGRVEVASKLLRS 600

The following BLAST results are available for this feature:

BLAST of MELO3C018751 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031588.1	1.1e-86	100.00	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK07040...	[more]
XP_008455340.1	1.1e-86	100.00	PREDICTED: pentatricopeptide repeat-containing protein At1g03560, mitochondrial ...	[more]
XP_004137016.2	3.1e-86	99.39	pentatricopeptide repeat-containing protein At1g03560, mitochondrial [Cucumis sa...	[more]
XP_038888300.1	6.5e-84	95.71	pentatricopeptide repeat-containing protein At1g03560, mitochondrial [Benincasa ...	[more]
KAG7011962.1	7.2e-83	93.87	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]

BLAST of MELO3C018751 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LR67	4.1e-73	80.75	Pentatricopeptide repeat-containing protein At1g03560, mitochondrial OS=Arabidop...	[more]
O49436	2.0e-14	32.85	Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana OX...	[more]
O04504	4.8e-13	31.06	Pentatricopeptide repeat-containing protein At1g09820 OS=Arabidopsis thaliana OX...	[more]
Q9SI78	4.1e-12	33.33	Pentatricopeptide repeat-containing protein At1g62720 OS=Arabidopsis thaliana OX...	[more]
Q9LFF1	6.9e-12	29.29	Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidop...	[more]

BLAST of MELO3C018751 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C6T2	5.2e-87	100.00	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3C0U2	5.2e-87	100.00	pentatricopeptide repeat-containing protein At1g03560, mitochondrial OS=Cucumis ...	[more]
A0A0A0K5P5	1.5e-86	99.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047320 PE=4 SV=1	[more]
A0A6J1GLU6	4.6e-83	93.87	pentatricopeptide repeat-containing protein At1g03560, mitochondrial OS=Cucurbit...	[more]
A0A6J1I1D4	1.0e-82	93.87	pentatricopeptide repeat-containing protein At1g03560, mitochondrial OS=Cucurbit...	[more]

BLAST of MELO3C018751 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G03560.1	2.9e-74	80.75	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT4G20090.1	1.4e-15	32.85	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G09820.1	3.4e-14	31.06	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT1G62720.1	2.9e-13	33.33	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT3G53700.1	4.9e-13	29.29	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 11..45 e-value: 7.6E-8 score: 30.1
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 9..56 e-value: 1.8E-11 score: 44.0
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 9..43 score: 11.860184
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 1..80 e-value: 6.7E-17 score: 63.4
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 81..140 e-value: 1.9E-5 score: 26.2
None	No IPR available	PANTHER	PTHR47934:SF12	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL	coord: 1..162
None	No IPR available	PANTHER	PTHR47934	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL	coord: 1..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C018751.1	MELO3C018751.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding