MELO3C018579 (gene) Melon (DHL92) v4

Overview
NameMELO3C018579
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionPhloem filament protein
Locationchr01: 1259659 .. 1260343 (-)
RNA-Seq ExpressionMELO3C018579
SyntenyMELO3C018579
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCAACCCACACACCACAAAATCTTCAATACTATATATCAAATATCAACTAAAGATCAGTACAAGAAAATGACACTTGGTATTGGTGGAGGAATCAGTATCGGCCTTGGTATTCCTGGCATCAATATATCGATCGGCGGAGGCATCGGTATCAGGGGTAGAAAGGGGGGGTGCAAGAGTCATGATCCTTCAAAAAAATGGACTGAAATTAAGAGTGTGAACGATCCTGCTATCATAGAAATTGCTAAGTTTGCAGTGAAAGTCTTCAACCAAAAACATGGAAACAATCTCCAGTTTCAAGCCGTTTTGGAAGCTTGGGTTGTTGTTCATGTTGATGGCAAGAAAGAGTATAGTATTGAATTAGTAGCAAAAGACTGTTTGCATCGTTGCCTCCAGTATCATGCTGTTGTGATTGAAATCTGTGGCACTCCCCCTGGCTGGAATCTTGTGTCTTTCAACCAAATCGTCGAGGAAAACTGAAAAAGTTATATGTATAATCGAAAGTTTATACTTATATATGTGCGAGATCTACGCAATAATAAATCTTATATGATACCGTAATGTTGACGATCTCTACTTTCTTTCTTCACTATATCTATTATAAAATAATCGAGGTCAAACGACGTTTTTAGTCCCGACGACCCTATATTTTGTGTTTTAGTTTTCGTTTTGGGTTCGTTGCACTC

mRNA sequence

GGCAACCCACACACCACAAAATCTTCAATACTATATATCAAATATCAACTAAAGATCAGTACAAGAAAATGACACTTGGTATTGGTGGAGGAATCAGTATCGGCCTTGGTATTCCTGGCATCAATATATCGATCGGCGGAGGCATCGGTATCAGGGGTAGAAAGGGGGGGTGCAAGAGTCATGATCCTTCAAAAAAATGGACTGAAATTAAGAGTGTGAACGATCCTGCTATCATAGAAATTGCTAAGTTTGCAGTGAAAGTCTTCAACCAAAAACATGGAAACAATCTCCAGTTTCAAGCCGTTTTGGAAGCTTGGGTTGTTGTTCATGTTGATGGCAAGAAAGAGTATAGTATTGAATTAGTAGCAAAAGACTGTTTGCATCGTTGCCTCCAGTATCATGCTGTTGTGATTGAAATCTGTGGCACTCCCCCTGGCTGGAATCTTGTGTCTTTCAACCAAATCGTCGAGGAAAACTGAAAAAGTTATATGTATAATCGAAAGTTTATACTTATATATGTGCGAGATCTACGCAATAATAAATCTTATATGATACCGTAATGTTGACGATCTCTACTTTCTTTCTTCACTATATCTATTATAAAATAATCGAGGTCAAACGACGTTTTTAGTCCCGACGACCCTATATTTTGTGTTTTAGTTTTCGTTTTGGGTTCGTTGCACTC

Coding sequence (CDS)

ATGACACTTGGTATTGGTGGAGGAATCAGTATCGGCCTTGGTATTCCTGGCATCAATATATCGATCGGCGGAGGCATCGGTATCAGGGGTAGAAAGGGGGGGTGCAAGAGTCATGATCCTTCAAAAAAATGGACTGAAATTAAGAGTGTGAACGATCCTGCTATCATAGAAATTGCTAAGTTTGCAGTGAAAGTCTTCAACCAAAAACATGGAAACAATCTCCAGTTTCAAGCCGTTTTGGAAGCTTGGGTTGTTGTTCATGTTGATGGCAAGAAAGAGTATAGTATTGAATTAGTAGCAAAAGACTGTTTGCATCGTTGCCTCCAGTATCATGCTGTTGTGATTGAAATCTGTGGCACTCCCCCTGGCTGGAATCTTGTGTCTTTCAACCAAATCGTCGAGGAAAACTGA

Protein sequence

MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIEIAKFAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICGTPPGWNLVSFNQIVEEN
Homology
BLAST of MELO3C018579 vs. NCBI nr
Match: ADN34263.1 (phloem filament protein [Cucumis melo subsp. melo] >KAA0031424.1 phloem filament protein [Cucumis melo var. makuwa])

HSP 1 Score: 280.4 bits (716), Expect = 8.2e-72
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0

Query: 1   MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIEIAK 60
           MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIEIAK
Sbjct: 1   MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIEIAK 60

Query: 61  FAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICGT 120
           FAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICGT
Sbjct: 61  FAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICGT 120

Query: 121 PPGWNLVSFNQIVEEN 137
           PPGWNLVSFNQIVEEN
Sbjct: 121 PPGWNLVSFNQIVEEN 136

BLAST of MELO3C018579 vs. NCBI nr
Match: TYK06875.1 (phloem filament protein [Cucumis melo var. makuwa])

HSP 1 Score: 278.9 bits (712), Expect = 2.4e-71
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 0

Query: 1   MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIEIAK 60
           MTLGIGGGI IGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIEIAK
Sbjct: 1   MTLGIGGGIGIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIEIAK 60

Query: 61  FAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICGT 120
           FAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICGT
Sbjct: 61  FAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICGT 120

Query: 121 PPGWNLVSFNQIVEEN 137
           PPGWNLVSFNQIVEEN
Sbjct: 121 PPGWNLVSFNQIVEEN 136

BLAST of MELO3C018579 vs. NCBI nr
Match: XP_011658840.2 (uncharacterized protein LOC105436098 [Cucumis sativus])

HSP 1 Score: 200.7 bits (509), Expect = 8.2e-48
Identity = 96/133 (72.18%), Postives = 109/133 (81.95%), Query Frame = 0

Query: 1   MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVN-DPAIIEIA 60
           MT+GIGGGI IG+G+PGI +SIGGGIGI  RKGGCKSHDPSKKW+++ +   D  II +A
Sbjct: 1   MTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKSHDPSKKWSQVPNAQADQVIINVA 60

Query: 61  KFAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICG 120
            FAV  FNQK+GN L F AVLEAWVVV  DGKKEYSIELVAKDCL+RCL +HA+VIEI G
Sbjct: 61  NFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKDCLNRCLYFHAIVIEIVG 120

Query: 121 TPPGWNLVSFNQI 133
            PPGWNL SF QI
Sbjct: 121 VPPGWNLFSFTQI 133

BLAST of MELO3C018579 vs. NCBI nr
Match: KAE8645826.1 (hypothetical protein Csa_017081 [Cucumis sativus])

HSP 1 Score: 200.7 bits (509), Expect = 8.2e-48
Identity = 96/133 (72.18%), Postives = 109/133 (81.95%), Query Frame = 0

Query: 1   MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVN-DPAIIEIA 60
           MT+GIGGGI IG+G+PGI +SIGGGIGI  RKGGCKSHDPSKKW+++ +   D  II +A
Sbjct: 9   MTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKSHDPSKKWSQVPNAQADQVIINVA 68

Query: 61  KFAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICG 120
            FAV  FNQK+GN L F AVLEAWVVV  DGKKEYSIELVAKDCL+RCL +HA+VIEI G
Sbjct: 69  NFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKDCLNRCLYFHAIVIEIVG 128

Query: 121 TPPGWNLVSFNQI 133
            PPGWNL SF QI
Sbjct: 129 VPPGWNLFSFTQI 141

BLAST of MELO3C018579 vs. NCBI nr
Match: ADN34264.1 (phloem filament protein [Cucumis melo subsp. melo] >KAA0031425.1 phloem filament protein [Cucumis melo var. makuwa])

HSP 1 Score: 166.4 bits (420), Expect = 1.7e-37
Identity = 86/135 (63.70%), Postives = 102/135 (75.56%), Query Frame = 0

Query: 1   MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIEIAK 60
           MTLGIGG I IG G+PG NISIGGGIGI GRKGGCKSH+PSKKW ++ +V  P ++E AK
Sbjct: 1   MTLGIGGRIGIGFGLPGFNISIGGGIGIGGRKGGCKSHNPSKKWIQLHNVKAPDVLEAAK 60

Query: 61  FAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIE-ICG 120
           FAV  FN+K+ NNL+FQ V EAW V  V+ +KEYSIELVAKDC HR L++HAVVIE    
Sbjct: 61  FAVDAFNKKYENNLEFQYVTEAW-VHEVNNEKEYSIELVAKDCFHRLLEFHAVVIEKTVD 120

Query: 121 TPPGWNLVSFNQIVE 135
               W LVSF +I +
Sbjct: 121 HKKIWILVSFERIFD 134

BLAST of MELO3C018579 vs. ExPASy Swiss-Prot
Match: Q84WT8 (Cysteine proteinase inhibitor 4 OS=Arabidopsis thaliana OX=3702 GN=CYS4 PE=3 SV=2)

HSP 1 Score: 47.0 bits (110), Expect = 2.0e-04
Identity = 32/95 (33.68%), Postives = 50/95 (52.63%), Query Frame = 0

Query: 22  IGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIEIAKFAVKVFNQKHGNNLQFQAVLE 81
           +GGG G+  RK              IK+V+DP ++ +AK+A++  N++    L F  V+E
Sbjct: 23  LGGGGGLGSRK-------------PIKNVSDPDVVAVAKYAIEEHNKESKEKLVFVKVVE 82

Query: 82  AWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIE 117
               V V G K Y +++ AKD   +   Y AVV+E
Sbjct: 83  GTTQV-VSGTK-YDLKIAAKDGGGKIKNYEAVVVE 102

BLAST of MELO3C018579 vs. ExPASy TrEMBL
Match: A0A5A7SJV3 (Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G001800 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 4.0e-72
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0

Query: 1   MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIEIAK 60
           MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIEIAK
Sbjct: 1   MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIEIAK 60

Query: 61  FAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICGT 120
           FAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICGT
Sbjct: 61  FAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICGT 120

Query: 121 PPGWNLVSFNQIVEEN 137
           PPGWNLVSFNQIVEEN
Sbjct: 121 PPGWNLVSFNQIVEEN 136

BLAST of MELO3C018579 vs. ExPASy TrEMBL
Match: E5GCR5 (Phloem filament protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 4.0e-72
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0

Query: 1   MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIEIAK 60
           MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIEIAK
Sbjct: 1   MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIEIAK 60

Query: 61  FAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICGT 120
           FAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICGT
Sbjct: 61  FAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICGT 120

Query: 121 PPGWNLVSFNQIVEEN 137
           PPGWNLVSFNQIVEEN
Sbjct: 121 PPGWNLVSFNQIVEEN 136

BLAST of MELO3C018579 vs. ExPASy TrEMBL
Match: A0A5D3C621 (Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001790 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.2e-71
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 0

Query: 1   MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIEIAK 60
           MTLGIGGGI IGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIEIAK
Sbjct: 1   MTLGIGGGIGIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIEIAK 60

Query: 61  FAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICGT 120
           FAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICGT
Sbjct: 61  FAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICGT 120

Query: 121 PPGWNLVSFNQIVEEN 137
           PPGWNLVSFNQIVEEN
Sbjct: 121 PPGWNLVSFNQIVEEN 136

BLAST of MELO3C018579 vs. ExPASy TrEMBL
Match: A0A0A0K477 (PP1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G067390 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 4.0e-48
Identity = 96/133 (72.18%), Postives = 109/133 (81.95%), Query Frame = 0

Query: 1   MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVN-DPAIIEIA 60
           MT+GIGGGI IG+G+PGI +SIGGGIGI  RKGGCKSHDPSKKW+++ +   D  II +A
Sbjct: 24  MTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKSHDPSKKWSQVPNAQADQVIINVA 83

Query: 61  KFAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICG 120
            FAV  FNQK+GN L F AVLEAWVVV  DGKKEYSIELVAKDCL+RCL +HA+VIEI G
Sbjct: 84  NFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKDCLNRCLYFHAIVIEIVG 143

Query: 121 TPPGWNLVSFNQI 133
            PPGWNL SF QI
Sbjct: 144 VPPGWNLFSFTQI 156

BLAST of MELO3C018579 vs. ExPASy TrEMBL
Match: A0A5A7SQL4 (Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G001810 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 8.3e-38
Identity = 86/135 (63.70%), Postives = 102/135 (75.56%), Query Frame = 0

Query: 1   MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIEIAK 60
           MTLGIGG I IG G+PG NISIGGGIGI GRKGGCKSH+PSKKW ++ +V  P ++E AK
Sbjct: 1   MTLGIGGRIGIGFGLPGFNISIGGGIGIGGRKGGCKSHNPSKKWIQLHNVKAPDVLEAAK 60

Query: 61  FAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIE-ICG 120
           FAV  FN+K+ NNL+FQ V EAW V  V+ +KEYSIELVAKDC HR L++HAVVIE    
Sbjct: 61  FAVDAFNKKYENNLEFQYVTEAW-VHEVNNEKEYSIELVAKDCFHRLLEFHAVVIEKTVD 120

Query: 121 TPPGWNLVSFNQIVE 135
               W LVSF +I +
Sbjct: 121 HKKIWILVSFERIFD 134

BLAST of MELO3C018579 vs. TAIR 10
Match: AT4G16500.1 (Cystatin/monellin superfamily protein )

HSP 1 Score: 47.0 bits (110), Expect = 1.4e-05
Identity = 32/95 (33.68%), Postives = 50/95 (52.63%), Query Frame = 0

Query: 22  IGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIEIAKFAVKVFNQKHGNNLQFQAVLE 81
           +GGG G+  RK              IK+V+DP ++ +AK+A++  N++    L F  V+E
Sbjct: 23  LGGGGGLGSRK-------------PIKNVSDPDVVAVAKYAIEEHNKESKEKLVFVKVVE 82

Query: 82  AWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIE 117
               V V G K Y +++ AKD   +   Y AVV+E
Sbjct: 83  GTTQV-VSGTK-YDLKIAAKDGGGKIKNYEAVVVE 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ADN34263.18.2e-72100.00phloem filament protein [Cucumis melo subsp. melo] >KAA0031424.1 phloem filament... [more]
TYK06875.12.4e-7199.26phloem filament protein [Cucumis melo var. makuwa][more]
XP_011658840.28.2e-4872.18uncharacterized protein LOC105436098 [Cucumis sativus][more]
KAE8645826.18.2e-4872.18hypothetical protein Csa_017081 [Cucumis sativus][more]
ADN34264.11.7e-3763.70phloem filament protein [Cucumis melo subsp. melo] >KAA0031425.1 phloem filament... [more]
Match NameE-valueIdentityDescription
Q84WT82.0e-0433.68Cysteine proteinase inhibitor 4 OS=Arabidopsis thaliana OX=3702 GN=CYS4 PE=3 SV=... [more]
Match NameE-valueIdentityDescription
A0A5A7SJV34.0e-72100.00Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
E5GCR54.0e-72100.00Phloem filament protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
A0A5D3C6211.2e-7199.26Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0K4774.0e-4872.18PP1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G067390 PE=4 SV... [more]
A0A5A7SQL48.3e-3863.70Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
AT4G16500.11.4e-0533.68Cystatin/monellin superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000010Cystatin domainPFAMPF16845SQAPIcoord: 47..130
e-value: 4.5E-12
score: 46.1
NoneNo IPR availableGENE3D3.10.450.10coord: 39..133
e-value: 5.6E-14
score: 54.1
NoneNo IPR availablePANTHERPTHR47116:SF5PHLOEM FILAMENT PROTEINcoord: 35..134
NoneNo IPR availableSUPERFAMILY54403Cystatin/monellincoord: 42..130
IPR027214CystatinPANTHERPTHR47116PHLOEM FILAMENT PROTEINcoord: 35..134

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C018579.1MELO3C018579.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0004869 cysteine-type endopeptidase inhibitor activity