MELO3C018315 (gene) Melon (DHL92) v4

Overview


Name	MELO3C018315
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Rab-GAP TBC domain-containing protein
Location	chr10: 19305366 .. 19305615 (-)
RNA-Seq Expression	MELO3C018315
Synteny	MELO3C018315

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTGATAGGAATGTTGGATATGTTCAGGTCTGAATCTTATTTTTGCATCAATCATATATTTGTTAACAATTGTATTTGGTGGTGAATGGTACGTAATACTTTTAAGCGTGTAGGGGATGGGATTTTTAGCTGATTTGTTGCTTCTCTATATGAGTGAAGAGGATGCATTCTGGCTGTTGGTCGAATTACTCAAAGGTGCAGTTCATGCTCCAATGGAAGAATTGTATCTGGTAACTCTATTCTTTTAG

mRNA sequence

TTTTTGATAGGAATGTTGGATATGTTCAGGGGATGGGATTTTTAGCTGATTTGTTGCTTCTCTATATGAGTGAAGAGGATGCATTCTGGCTGTTGGTCGAATTACTCAAAGGTGCAGTTCATGCTCCAATGGAAGAATTGTATCTGGTAACTCTATTCTTTTAG

Coding sequence (CDS)

ATGGGATTTTTAGCTGATTTGTTGCTTCTCTATATGAGTGAAGAGGATGCATTCTGGCTGTTGGTCGAATTACTCAAAGGTGCAGTTCATGCTCCAATGGAAGAATTGTATCTGGTAACTCTATTCTTTTAG

Protein sequence

MGFLADLLLLYMSEEDAFWLLVELLKGAVHAPMEELYLVTLFF

Homology

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BLAST of MELO3C018315 vs. NCBI nr
Match: XP_016901610.1 (PREDICTED: DNA repair protein recA homolog 1, chloroplastic-like isoform X1 [Cucumis melo] >XP_016901611.1 PREDICTED: DNA repair protein recA homolog 1, chloroplastic-like isoform X1 [Cucumis melo] >XP_016901612.1 PREDICTED: DNA repair protein recA homolog 1, chloroplastic-like isoform X1 [Cucumis melo] >XP_016901613.1 PREDICTED: DNA repair protein recA homolog 1, chloroplastic-like isoform X1 [Cucumis melo] >XP_016901614.1 PREDICTED: DNA repair protein recA homolog 1, chloroplastic-like isoform X1 [Cucumis melo])

HSP 1 Score: 76.3 bits (186), Expect = 7.4e-11
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  MGFLADLLLLYMSEEDAFWLLVELLKGAVHAPMEELYL 39
          MGFLADLLLLYMSEEDAFWLLVELLKGAVHAPMEELYL
Sbjct: 20 MGFLADLLLLYMSEEDAFWLLVELLKGAVHAPMEELYL 57

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BLAST of MELO3C018315 vs. NCBI nr
Match: TYK29028.1 (DNA repair protein recA-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 7.4e-11
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1   MGFLADLLLLYMSEEDAFWLLVELLKGAVHAPMEELYL 39
           MGFLADLLLLYMSEEDAFWLLVELLKGAVHAPMEELYL
Sbjct: 93  MGFLADLLLLYMSEEDAFWLLVELLKGAVHAPMEELYL 130

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BLAST of MELO3C018315 vs. NCBI nr
Match: KAF4385495.1 (hypothetical protein F8388_010051 [Cannabis sativa])

HSP 1 Score: 70.5 bits (171), Expect = 4.1e-09
Identity = 37/41 (90.24%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1   MGFLADLLLLYMSEEDAFWLLVELLKGAVHAPMEELYLVTL 42
           MGFLA LLLLYMSEEDAFWLLV LLKGAVHAPME LYLV L
Sbjct: 223 MGFLAGLLLLYMSEEDAFWLLVALLKGAVHAPMEGLYLVGL 263

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BLAST of MELO3C018315 vs. NCBI nr
Match: XP_024375794.1 (EVI5-like protein [Physcomitrium patens] >XP_024375795.1 EVI5-like protein [Physcomitrium patens] >XP_024375796.1 EVI5-like protein [Physcomitrium patens] >PNR53825.1 hypothetical protein PHYPA_007500 [Physcomitrium patens])

HSP 1 Score: 70.5 bits (171), Expect = 4.1e-09
Identity = 37/41 (90.24%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1   MGFLADLLLLYMSEEDAFWLLVELLKGAVHAPMEELYLVTL 42
           MGFLA LLLLYMSEEDAFWLLV LLKGAVHAPME LYLV L
Sbjct: 186 MGFLAGLLLLYMSEEDAFWLLVALLKGAVHAPMEGLYLVGL 226

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BLAST of MELO3C018315 vs. NCBI nr
Match: PNR37908.1 (hypothetical protein PHYPA_021018 [Physcomitrium patens])

HSP 1 Score: 70.5 bits (171), Expect = 4.1e-09
Identity = 37/41 (90.24%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1   MGFLADLLLLYMSEEDAFWLLVELLKGAVHAPMEELYLVTL 42
           MGFLA LLLLYMSEEDAFWLLV LLKGAVHAPME LYLV L
Sbjct: 114 MGFLAGLLLLYMSEEDAFWLLVALLKGAVHAPMEGLYLVGL 154

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BLAST of MELO3C018315 vs. ExPASy TrEMBL
Match: A0A1S4E059 (DNA repair protein recA homolog 1, chloroplastic-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495083 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.6e-11
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  MGFLADLLLLYMSEEDAFWLLVELLKGAVHAPMEELYL 39
          MGFLADLLLLYMSEEDAFWLLVELLKGAVHAPMEELYL
Sbjct: 20 MGFLADLLLLYMSEEDAFWLLVELLKGAVHAPMEELYL 57

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BLAST of MELO3C018315 vs. ExPASy TrEMBL
Match: A0A5D3DZZ5 (DNA repair protein recA-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G001410 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.6e-11
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1   MGFLADLLLLYMSEEDAFWLLVELLKGAVHAPMEELYL 39
           MGFLADLLLLYMSEEDAFWLLVELLKGAVHAPMEELYL
Sbjct: 93  MGFLADLLLLYMSEEDAFWLLVELLKGAVHAPMEELYL 130

[Close]

BLAST of MELO3C018315 vs. ExPASy TrEMBL
Match: A0A7I4B6D7 (Rab-GAP TBC domain-containing protein OS=Physcomitrium patens OX=3218 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-09
Identity = 37/41 (90.24%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1   MGFLADLLLLYMSEEDAFWLLVELLKGAVHAPMEELYLVTL 42
           MGFLA LLLLYMSEEDAFWLLV LLKGAVHAPME LYLV L
Sbjct: 183 MGFLAGLLLLYMSEEDAFWLLVALLKGAVHAPMEGLYLVGL 223

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BLAST of MELO3C018315 vs. ExPASy TrEMBL
Match: A9RKU9 (Predicted protein OS=Physcomitrium patens OX=3218 GN=PHYPA_021018 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-09
Identity = 37/41 (90.24%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1   MGFLADLLLLYMSEEDAFWLLVELLKGAVHAPMEELYLVTL 42
           MGFLA LLLLYMSEEDAFWLLV LLKGAVHAPME LYLV L
Sbjct: 114 MGFLAGLLLLYMSEEDAFWLLVALLKGAVHAPMEGLYLVGL 154

[Close]

BLAST of MELO3C018315 vs. ExPASy TrEMBL
Match: A0A2K1KJ89 (Rab-GAP TBC domain-containing protein OS=Physcomitrium patens OX=3218 GN=PHYPA_007500 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-09
Identity = 37/41 (90.24%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1   MGFLADLLLLYMSEEDAFWLLVELLKGAVHAPMEELYLVTL 42
           MGFLA LLLLYMSEEDAFWLLV LLKGAVHAPME LYLV L
Sbjct: 186 MGFLAGLLLLYMSEEDAFWLLVALLKGAVHAPMEGLYLVGL 226

[Close]

BLAST of MELO3C018315 vs. TAIR 10
Match: AT3G02460.1 (Ypt/Rab-GAP domain of gyp1p superfamily protein )

HSP 1 Score: 66.6 bits (161), Expect = 5.5e-12
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 1   MGFLADLLLLYMSEEDAFWLLVELLKGAVHAPMEELY 38
           MGF+A LLLLYMSEEDAFWLLV LLKGAVHAPME LY
Sbjct: 175 MGFIAGLLLLYMSEEDAFWLLVALLKGAVHAPMEGLY 211

[Close]

BLAST of MELO3C018315 vs. TAIR 10
Match: AT3G02460.2 (Ypt/Rab-GAP domain of gyp1p superfamily protein )

HSP 1 Score: 66.6 bits (161), Expect = 5.5e-12
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 1   MGFLADLLLLYMSEEDAFWLLVELLKGAVHAPMEELY 38
           MGF+A LLLLYMSEEDAFWLLV LLKGAVHAPME LY
Sbjct: 175 MGFIAGLLLLYMSEEDAFWLLVALLKGAVHAPMEGLY 211

[Close]

BLAST of MELO3C018315 vs. TAIR 10
Match: AT5G15930.1 (plant adhesion molecule 1 )

HSP 1 Score: 63.9 bits (154), Expect = 3.5e-11
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 1   MGFLADLLLLYMSEEDAFWLLVELLKGAVHAPMEELY 38
           MGF+A LLLLYMSEEDAFWLLV LLKGAVH+P+E LY
Sbjct: 172 MGFIAGLLLLYMSEEDAFWLLVALLKGAVHSPIEGLY 208

The following BLAST results are available for this feature:

BLAST of MELO3C018315 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016901610.1	7.4e-11	100.00	PREDICTED: DNA repair protein recA homolog 1, chloroplastic-like isoform X1 [Cuc...	[more]
TYK29028.1	7.4e-11	100.00	DNA repair protein recA-like protein 1 [Cucumis melo var. makuwa]	[more]
KAF4385495.1	4.1e-09	90.24	hypothetical protein F8388_010051 [Cannabis sativa]	[more]
XP_024375794.1	4.1e-09	90.24	EVI5-like protein [Physcomitrium patens] >XP_024375795.1 EVI5-like protein [Phys...	[more]
PNR37908.1	4.1e-09	90.24	hypothetical protein PHYPA_021018 [Physcomitrium patens]	[more]

BLAST of MELO3C018315 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C018315 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E059	3.6e-11	100.00	DNA repair protein recA homolog 1, chloroplastic-like isoform X1 OS=Cucumis melo...	[more]
A0A5D3DZZ5	3.6e-11	100.00	DNA repair protein recA-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A7I4B6D7	2.0e-09	90.24	Rab-GAP TBC domain-containing protein OS=Physcomitrium patens OX=3218 PE=4 SV=1	[more]
A9RKU9	2.0e-09	90.24	Predicted protein OS=Physcomitrium patens OX=3218 GN=PHYPA_021018 PE=4 SV=1	[more]
A0A2K1KJ89	2.0e-09	90.24	Rab-GAP TBC domain-containing protein OS=Physcomitrium patens OX=3218 GN=PHYPA_0...	[more]

BLAST of MELO3C018315 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G02460.1	5.5e-12	89.19	Ypt/Rab-GAP domain of gyp1p superfamily protein	[more]
AT3G02460.2	5.5e-12	89.19	Ypt/Rab-GAP domain of gyp1p superfamily protein	[more]
AT5G15930.1	3.5e-11	83.78	plant adhesion molecule 1	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.8.270	putative rabgap domain of human tbc1 domain family member 14 like domains	coord: 1..33 e-value: 5.5E-6 score: 28.3
IPR035969	Rab-GTPase-TBC domain superfamily	SUPERFAMILY	47923	Ypt/Rab-GAP domain of gyp1p	coord: 1..29

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C018315.1	MELO3C018315.1	mRNA