MELO3C017992.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C017992.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	UBP-type domain-containing protein
Location	chr07: 27107929 .. 27110312 (-)
RNA-Seq Expression	MELO3C017992.jh1
Synteny	MELO3C017992.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

AATGGCGGAAGAAGCCGGTTCATCTTCGTCCACTTCCAACCAACTGGTACTCTAATCAAACTCATTCTATCAAGTTCTCTTTGATTGCCCTAAAAATTCCTGCTTCTTTTCTACTTTTCTATCAATTTATTGAATCGCTGATCTGGGCTAATGTTGTTTTACGTCTTCTCTAGCCACTAATAATCGAAATCGAAGATGAAGTTGAGGAAGAACTCTTATACGGCGCCGGATCGGGATGGGTCCAGGCTCTTACTTCTTGCGATCATCTCGCTTCCTTATCTTCCGACCTCGCTCACATTCCGCCCCCTCAGACTCCCTGTAGCCAGTCAGTTTTTCTTTTCCATAAACTATGTTATTTTGTTGTTCATCTTAATCTTCGAATGTGTGTACCTTTCATTTTCATTTCCATTTCTGCTGAAGGCATTTGATGTTTTGATTCTTTGAGATTTTGCTTCATCAATCGAATCCTAATTGTTTTGGCTGATAATTGGTTTAAATTCTACGATTTTAATCCCTGAACTTCCAAGTTTCTCTCACTTTAGAAATGTCTATTTTGGTATGTGAACTTCCAAAATAATACTTTTTTTGGTCCTCAAACATTTTGAAATTTTAGGGACCAAAATAGTTTAAACATAAAAATTTGAAGACAGGTTATAGGTAGTAAAATGAGATTAAGGCTTCATAGATTTATCTTTGACAAACGAGGATGGTGGACTTGAGAGTTGAGCATAGTTTTTATGGTTAGGTAATAGTAGTTGACGTCTTTTATTTTGTGTTTTGGGTTTGAATCGCCTTACCTCATTTGCTAATGTGTAAATGAAAAGTTGTCTTTTGTGGACTTTAGGCGTTTAGGAAGATTCTAAAATATGGTTACTGTCACCCTCTTCTCCTACGAGCTTTTATATAGAACCCAGACATATTGAAATATAAATGGGTTAGAATTTATAAGATTATCAAATAACAAGCACGTCAAGTTACTTGCACCTCACTTCTTGAGATCACTCCTAAGCTATAATTCACTCACCAAACTATTGTCTATCCACCTCCTTTCCCTTTTTCTTTTTTTTTTTTACATATCTAGAGAGTCATGCGAGCTTATGCAACTTTAATTAATCTCAAGAGACAACCCACTTGTCCCCTATAGTAGCAAGTGTCAATGAAACTCGTGGAATACTAAATCCTAAGAAGGTGATCATGATGGATTGAACTCATGATCCATTATTTCTTTATTAAAGTTACGTGGTATTTTTTATAAGGCTAACACATGATGGTTATCTGAAAAATCCGATCTTTTCAATTACGTCCATAGACATTAAAGATTTAAAATTAAGTTTTCTAAATGGAGGCTTTTAAGCTCAAGATCTTGAAGGATATATGTCAACATCTCAAGTCTTTGCCACTAAGGCTATGCTTTGAAGTTAGTGTTCCACTGATATCATGCAAAAAAATTGATGTTCTTCCATTTCAGCTAGACATCTTCTTTCGGTGGCTCTATATGAGTATAATGTACGTAGATGTTTTATAATCATAACATCCACATCAAAGTCAGGTTCTTTTCTGTCAATTTTTATATGAATTGTAATTGACGTATTATTGCGTCTAATTTTACAAGTGCTTTCAGATCGATTTTTATTTGAGTTTATTTCCATGTTTTAGATAAACGCATTTCTATTTGGTTTATTAATCCATTGAACAATCTACATGTGCAAGATGCCAGAATCCCAAGGAGAACTGGCTGTGTTTATGCTGTAAGGATGTCTTTTGTAGCCGTTTTGTGAATAAGCACATGCTTCAACATTATGAGCTATCAACTCATTGCCTTGCACTCAGCTACAGGTAAATGTAAAATGGTTCTTTAGATTCTACTCTAATTTCTGCTTTCTATAGGTCTAAAAAATTATAAACACAGGTTTTGTGATGCTCATTAATAATTTGCATTTGGAAACAGTGATTTGTCAGTTTGGTGTTTCTCCTGCGATGCATATTTGGATGCACAAGTGATTCAGGAATTACGACCAGTACACGAAGTTGCCTACATACTGAAATTTGGCGAGGCCCCACCCTTTCGATAGTATTAATCATCCTGCACTGGGGGAACTGAAATATCTGATTATTAGTGTTATAACTTTTCTAGTCTCTCCATATTAGGTGTTTTGATTTCTTGGTTTGTACATTTCGAGCAAATGGCTTATAATCTGCACATGAATTGGGTTGGGTTGTCATGTTCACGGTAAGTTGTTGGTTCACTTTACAGAAGTGAGGGATAGATTAGAATCTCATATCTTGTTCAAGAAAATCATACGAAGCTTTTACTTGAAACTGATGAACTTCTTGTTTCAAACCTTGATGATAACATGAATGAAATTGGTTCCCCATTTTTGTCA

mRNA sequence

AATGGCGGAAGAAGCCGGTTCATCTTCGTCCACTTCCAACCAACTGCCACTAATAATCGAAATCGAAGATGAAGTTGAGGAAGAACTCTTATACGGCGCCGGATCGGGATGGGTCCAGGCTCTTACTTCTTGCGATCATCTCGCTTCCTTATCTTCCGACCTCGCTCACATTCCGCCCCCTCAGACTCCCTGTAGCCAATGCCAGAATCCCAAGGAGAACTGGCTGTGTTTATGCTGTAAGGATGTCTTTTGTAGCCGTTTTGTGAATAAGCACATGCTTCAACATTATGAGCTATCAACTCATTGCCTTGCACTCAGCTACAGTGATTTGTCAGTTTGGTGTTTCTCCTGCGATGCATATTTGGATGCACAAGTGATTCAGGAATTACGACCAGTACACGAAGTTGCCTACATACTGAAATTTGGCGAGGCCCCACCCTTTCGATAGTATTAATCATCCTGCACTGGGGGAACTGAAATATCTGATTATTAGTGTTATAACTTTTCTAGTCTCTCCATATTAGGTGTTTTGATTTCTTGGTTTGTACATTTCGAGCAAATGGCTTATAATCTGCACATGAATTGGGTTGGGTTGTCATGTTCACGGTAAGTTGTTGGTTCACTTTACAGAAGTGAGGGATAGATTAGAATCTCATATCTTGTTCAAGAAAATCATACGAAGCTTTTACTTGAAACTGATGAACTTCTTGTTTCAAACCTTGATGATAACATGAATGAAATTGGTTCCCCATTTTTGTCA

Coding sequence (CDS)

ATGGCGGAAGAAGCCGGTTCATCTTCGTCCACTTCCAACCAACTGCCACTAATAATCGAAATCGAAGATGAAGTTGAGGAAGAACTCTTATACGGCGCCGGATCGGGATGGGTCCAGGCTCTTACTTCTTGCGATCATCTCGCTTCCTTATCTTCCGACCTCGCTCACATTCCGCCCCCTCAGACTCCCTGTAGCCAATGCCAGAATCCCAAGGAGAACTGGCTGTGTTTATGCTGTAAGGATGTCTTTTGTAGCCGTTTTGTGAATAAGCACATGCTTCAACATTATGAGCTATCAACTCATTGCCTTGCACTCAGCTACAGTGATTTGTCAGTTTGGTGTTTCTCCTGCGATGCATATTTGGATGCACAAGTGATTCAGGAATTACGACCAGTACACGAAGTTGCCTACATACTGAAATTTGGCGAGGCCCCACCCTTTCGATAG

Protein sequence

MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQTPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYELSTHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPPFR

Homology

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BLAST of MELO3C017992.jh1 vs. NCBI nr
Match: XP_008454385.1 (PREDICTED: histone deacetylase 6 [Cucumis melo])

HSP 1 Score: 309 bits (791), Expect = 3.44e-106
Identity = 147/148 (99.32%), Postives = 147/148 (99.32%), Query Frame = 0


Query: 1   MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60
           MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP
Sbjct: 1   MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60

Query: 61  QTPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYELSTHCLALSYSDLSVWCFSCDAY 120
           QTPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYE STHCLALSYSDLSVWCFSCDAY
Sbjct: 61  QTPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAY 120

Query: 121 LDAQVIQELRPVHEVAYILKFGEAPPFR 148
           LDAQVIQELRPVHEVAYILKFGEAPPFR
Sbjct: 121 LDAQVIQELRPVHEVAYILKFGEAPPFR 148

[Close]

BLAST of MELO3C017992.jh1 vs. NCBI nr
Match: KAA0044348.1 (histone deacetylase 6 [Cucumis melo var. makuwa])

HSP 1 Score: 307 bits (787), Expect = 1.40e-105
Identity = 146/148 (98.65%), Postives = 146/148 (98.65%), Query Frame = 0


Query: 1   MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60
           MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP
Sbjct: 1   MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60

Query: 61  QTPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYELSTHCLALSYSDLSVWCFSCDAY 120
           QTPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYE STHCLALSYSDLSVWCFSCDAY
Sbjct: 61  QTPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAY 120

Query: 121 LDAQVIQELRPVHEVAYILKFGEAPPFR 148
           LDAQVIQELRPVHEVAYILKFGE PPFR
Sbjct: 121 LDAQVIQELRPVHEVAYILKFGEVPPFR 148

[Close]

BLAST of MELO3C017992.jh1 vs. NCBI nr
Match: XP_004152271.1 (histone deacetylase 6 [Cucumis sativus] >KGN52775.1 hypothetical protein Csa_015084 [Cucumis sativus])

HSP 1 Score: 293 bits (749), Expect = 8.19e-100
Identity = 141/148 (95.27%), Postives = 143/148 (96.62%), Query Frame = 0


Query: 1   MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60
           MAE+AGSSSSTSN L LII  EDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP
Sbjct: 1   MAEKAGSSSSTSNPLTLII--EDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60

Query: 61  QTPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYELSTHCLALSYSDLSVWCFSCDAY 120
           QTPCSQCQNPKENW+CLCCKDVFCSRFVNKHMLQHYE STHCLALSYSDLSVWCFSCDAY
Sbjct: 61  QTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAY 120

Query: 121 LDAQVIQELRPVHEVAYILKFGEAPPFR 148
           LDAQVIQELRPVHEVAYILKFGEAPPFR
Sbjct: 121 LDAQVIQELRPVHEVAYILKFGEAPPFR 146

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BLAST of MELO3C017992.jh1 vs. NCBI nr
Match: XP_038904979.1 (histone deacetylase 6 [Benincasa hispida])

HSP 1 Score: 266 bits (680), Expect = 2.55e-89
Identity = 130/148 (87.84%), Postives = 135/148 (91.22%), Query Frame = 0


Query: 1   MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60
           MA+EAGSSSS  N LPLI+  E+EVEEELLYGA SGWV+ALTSCDHLA LS DLAHIPPP
Sbjct: 1   MAKEAGSSSS--NPLPLIL--EEEVEEELLYGAESGWVEALTSCDHLALLSPDLAHIPPP 60

Query: 61  QTPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYELSTHCLALSYSDLSVWCFSCDAY 120
             PCS+CQNPKENWLCL CKDVFCSRFVNKHMLQHYE  THCLALSYSDLSVWCFSCDAY
Sbjct: 61  DIPCSECQNPKENWLCLSCKDVFCSRFVNKHMLQHYEQVTHCLALSYSDLSVWCFSCDAY 120

Query: 121 LDAQVIQELRPVHEVAYILKFGEAPPFR 148
           LDAQVIQELRPVHEVAYILKFGEAPPFR
Sbjct: 121 LDAQVIQELRPVHEVAYILKFGEAPPFR 144

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BLAST of MELO3C017992.jh1 vs. NCBI nr
Match: KAG6600290.1 (Histone deacetylase 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 251 bits (640), Expect = 3.20e-83
Identity = 121/148 (81.76%), Postives = 129/148 (87.16%), Query Frame = 0


Query: 1   MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60
           MA EAGSSSS  N  P +I  E+EV EE LYGA SGWV+ALTSCDHL SL SDLAHIPPP
Sbjct: 1   MANEAGSSSS--NPAPCVI--EEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPP 60

Query: 61  QTPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYELSTHCLALSYSDLSVWCFSCDAY 120
            T C +C+NPKENWLCLCCK+VFCSRFVNKHMLQHY+ S H LALSYSDLSVWCFSCDAY
Sbjct: 61  DTACCECENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAY 120

Query: 121 LDAQVIQELRPVHEVAYILKFGEAPPFR 148
           LDAQ+IQELRPVHEVAYILKFGEAPPFR
Sbjct: 121 LDAQLIQELRPVHEVAYILKFGEAPPFR 144

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BLAST of MELO3C017992.jh1 vs. ExPASy Swiss-Prot
Match: Q9UBN7 (Histone deacetylase 6 OS=Homo sapiens OX=9606 GN=HDAC6 PE=1 SV=2)

HSP 1 Score: 91.7 bits (226), Expect = 7.7e-18
Identity = 46/109 (42.20%), Postives = 60/109 (55.05%), Query Frame = 0


Query: 38   VQALTSCDHLASLSSDLAHIPPPQTPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYE 97
            V  L  C HL ++    A       PC  C   +ENW+CL C  V+C R++N HMLQH+ 
Sbjct: 1107 VTPLPWCPHLVAVCPIPAAGLDVTQPCGDCGTIQENWVCLSCYQVYCGRYINGHMLQHHG 1166

Query: 98   LSTHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPP 147
             S H L LSY DLS WC+ C AY+  Q + +   V  +A+  KFGE  P
Sbjct: 1167 NSGHPLVLSYIDLSAWCYYCQAYVHHQALLD---VKNIAHQNKFGEDMP 1212

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BLAST of MELO3C017992.jh1 vs. ExPASy Swiss-Prot
Match: Q9Z2V5 (Histone deacetylase 6 OS=Mus musculus OX=10090 GN=Hdac6 PE=1 SV=3)

HSP 1 Score: 89.7 bits (221), Expect = 2.9e-17
Identity = 54/146 (36.99%), Postives = 73/146 (50.00%), Query Frame = 0


Query: 1    MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60
            + E AG      N L L     D   +++ Y      V  L+ C HL ++    A     
Sbjct: 1011 LGEAAGGQD--MNSLMLTQGFGDFNTQDVFYA-----VTPLSWCPHLMAVCPIPAAGLDV 1070

Query: 61   QTPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYELSTHCLALSYSDLSVWCFSCDAY 120
              PC  C   +ENW+CL C  V+CSR+VN HM+ H+E S H L LS  DLS WC+ C AY
Sbjct: 1071 SQPCKTCGTVQENWVCLTCYQVYCSRYVNAHMVCHHEASEHPLVLSCVDLSTWCYVCQAY 1130

Query: 121  LDAQVIQELRPVHEVAYILKFGEAPP 147
            +     ++L+ V   A+  KFGE  P
Sbjct: 1131 VHH---EDLQDVKNAAHQNKFGEDMP 1146

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BLAST of MELO3C017992.jh1 vs. ExPASy Swiss-Prot
Match: Q20296 (Histone deacetylase 6 OS=Caenorhabditis elegans OX=6239 GN=hda-6 PE=3 SV=2)

HSP 1 Score: 84.7 bits (208), Expect = 9.4e-16
Identity = 52/150 (34.67%), Postives = 76/150 (50.67%), Query Frame = 0


Query: 1   MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPP- 60
           MA+++ SS S+S+              E++    +  V  L +C HL     ++  +PP 
Sbjct: 818 MADQSSSSGSSSS------STRPSHNLEIMDSGPAHAVVPLATCPHL----KEVKPLPPA 877

Query: 61  ---PQTPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYELSTHCLALSYSDLSVWCFS 120
               +T CS+CQ   E W CL C    C RFVN+H + H+  S+H +ALS +DLSVWC+ 
Sbjct: 878 KINARTACSECQIGAEVWTCLTCYKYNCGRFVNEHAMMHHLSSSHPMALSMADLSVWCYP 937

Query: 121 CDAYLDAQVIQELRPVHEVAYILKFGEAPP 147
           CD+Y+       L      A+  KFGE  P
Sbjct: 938 CDSYVHNPA---LIGAKSAAHESKFGETMP 954

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BLAST of MELO3C017992.jh1 vs. ExPASy Swiss-Prot
Match: Q54QE6 (NAD-dependent deacetylase sir2A OS=Dictyostelium discoideum OX=44689 GN=sir2A PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.1e-11
Identity = 27/60 (45.00%), Postives = 39/60 (65.00%), Query Frame = 0


Query: 62  TPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYELSTHCLALSYSDLSVWCFSCDAYL 121
           T C  C +  ENW+C+ C  V CSR VN H  +H+E + H ++ S+SD S WC++CD Y+
Sbjct: 32  TKCHACNDESENWICMTCGVVSCSRHVNGHAGEHFENTKHPISASFSDHSFWCYTCDTYV 91

[Close]

BLAST of MELO3C017992.jh1 vs. ExPASy Swiss-Prot
Match: Q9H0E7 (Ubiquitin carboxyl-terminal hydrolase 44 OS=Homo sapiens OX=9606 GN=USP44 PE=1 SV=2)

HSP 1 Score: 66.6 bits (161), Expect = 2.7e-10
Identity = 27/84 (32.14%), Postives = 49/84 (58.33%), Query Frame = 0


Query: 40  ALTSCDHLA--SLSSDLAHIPPPQTPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYE 99
           A+ +C H+    L+ D + + P +  C  C   +  W CL C  V C R++ +H L+H++
Sbjct: 3   AMDTCKHVGQLQLAQDHSSLNPQKWHCVDCNTTESIWACLSCSHVACGRYIEEHALKHFQ 62

Query: 100 LSTHCLALSYSDLSVWCFSCDAYL 122
            S+H +AL  +++ V+C+ CD Y+
Sbjct: 63  ESSHPVALEVNEMYVFCYLCDDYV 86

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BLAST of MELO3C017992.jh1 vs. ExPASy TrEMBL
Match: A0A1S3BZ94 (histone deacetylase 6 OS=Cucumis melo OX=3656 GN=LOC103494801 PE=4 SV=1)

HSP 1 Score: 309 bits (791), Expect = 1.67e-106
Identity = 147/148 (99.32%), Postives = 147/148 (99.32%), Query Frame = 0


Query: 1   MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60
           MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP
Sbjct: 1   MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60

Query: 61  QTPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYELSTHCLALSYSDLSVWCFSCDAY 120
           QTPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYE STHCLALSYSDLSVWCFSCDAY
Sbjct: 61  QTPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAY 120

Query: 121 LDAQVIQELRPVHEVAYILKFGEAPPFR 148
           LDAQVIQELRPVHEVAYILKFGEAPPFR
Sbjct: 121 LDAQVIQELRPVHEVAYILKFGEAPPFR 148

[Close]

BLAST of MELO3C017992.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TNA2 (Histone deacetylase 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00740 PE=4 SV=1)

HSP 1 Score: 307 bits (787), Expect = 6.79e-106
Identity = 146/148 (98.65%), Postives = 146/148 (98.65%), Query Frame = 0


Query: 1   MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60
           MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP
Sbjct: 1   MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60

Query: 61  QTPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYELSTHCLALSYSDLSVWCFSCDAY 120
           QTPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYE STHCLALSYSDLSVWCFSCDAY
Sbjct: 61  QTPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAY 120

Query: 121 LDAQVIQELRPVHEVAYILKFGEAPPFR 148
           LDAQVIQELRPVHEVAYILKFGE PPFR
Sbjct: 121 LDAQVIQELRPVHEVAYILKFGEVPPFR 148

[Close]

BLAST of MELO3C017992.jh1 vs. ExPASy TrEMBL
Match: A0A0A0KT14 (UBP-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G000940 PE=4 SV=1)

HSP 1 Score: 293 bits (749), Expect = 3.97e-100
Identity = 141/148 (95.27%), Postives = 143/148 (96.62%), Query Frame = 0


Query: 1   MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60
           MAE+AGSSSSTSN L LII  EDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP
Sbjct: 1   MAEKAGSSSSTSNPLTLII--EDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60

Query: 61  QTPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYELSTHCLALSYSDLSVWCFSCDAY 120
           QTPCSQCQNPKENW+CLCCKDVFCSRFVNKHMLQHYE STHCLALSYSDLSVWCFSCDAY
Sbjct: 61  QTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAY 120

Query: 121 LDAQVIQELRPVHEVAYILKFGEAPPFR 148
           LDAQVIQELRPVHEVAYILKFGEAPPFR
Sbjct: 121 LDAQVIQELRPVHEVAYILKFGEAPPFR 146

[Close]

BLAST of MELO3C017992.jh1 vs. ExPASy TrEMBL
Match: A0A6J1D695 (histone deacetylase 6 OS=Momordica charantia OX=3673 GN=LOC111017700 PE=4 SV=1)

HSP 1 Score: 246 bits (628), Expect = 1.08e-81
Identity = 121/148 (81.76%), Postives = 129/148 (87.16%), Query Frame = 0


Query: 1   MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60
           MA EAGSSSS  N  P IIE E E   E L+GA +GWV+ALT CDHLASLSSDLAHIP P
Sbjct: 1   MANEAGSSSS--NLPPCIIEEEGE---EQLFGAEAGWVEALTYCDHLASLSSDLAHIPTP 60

Query: 61  QTPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYELSTHCLALSYSDLSVWCFSCDAY 120
            T CS+CQNPKENWLCLCCK++ CSRFVNKHMLQHY+ STHCLALSYSDLSVWCFSCDAY
Sbjct: 61  DTACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCDAY 120

Query: 121 LDAQVIQELRPVHEVAYILKFGEAPPFR 148
           LDAQVIQELRPV+EVAYILKFGEAPPFR
Sbjct: 121 LDAQVIQELRPVYEVAYILKFGEAPPFR 143

[Close]

BLAST of MELO3C017992.jh1 vs. ExPASy TrEMBL
Match: A0A061E839 (Regulator of Vps4 activity in the MVB pathway protein OS=Theobroma cacao OX=3641 GN=TCM_007207 PE=4 SV=1)

HSP 1 Score: 235 bits (599), Expect = 5.03e-77
Identity = 109/148 (73.65%), Postives = 128/148 (86.49%), Query Frame = 0


Query: 1   MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60
           MA++AG+SSS    L +I+E ED+ +  L+YGA SGWV+A T CDHLASLSSDLAHIP P
Sbjct: 1   MADQAGASSS---HLKIILEEEDDYD--LIYGAESGWVEARTQCDHLASLSSDLAHIPTP 60

Query: 61  QTPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYELSTHCLALSYSDLSVWCFSCDAY 120
            TPC++CQ+P ENWLCLCCKDV CSRFVNKHML+HY+ +THC+ALSYSDLSVWCF+CD Y
Sbjct: 61  NTPCNRCQHPSENWLCLCCKDVLCSRFVNKHMLEHYKQTTHCIALSYSDLSVWCFACDTY 120

Query: 121 LDAQVIQELRPVHEVAYILKFGEAPPFR 148
           LDAQVI++LRPVHE AYILKFGEAPP R
Sbjct: 121 LDAQVIRQLRPVHETAYILKFGEAPPHR 143

[Close]

BLAST of MELO3C017992.jh1 vs. TAIR 10
Match: AT2G14830.2 (Regulator of Vps4 activity in the MVB pathway protein )

HSP 1 Score: 213.4 bits (542), Expect = 1.2e-55
Identity = 98/146 (67.12%), Postives = 120/146 (82.19%), Query Frame = 0


Query: 1   MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60
           MAE+A SSSS+S+      E+ DE ++ +L GAGSGWV+A  +CDHL +LS DL H+P P
Sbjct: 1   MAEKAPSSSSSSSPPK---EVADETQDWIL-GAGSGWVEARKTCDHLNTLSPDLLHLPTP 60

Query: 61  QTPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYELSTHCLALSYSDLSVWCFSCDAY 120
            TPCS+CQNP ENWLCLCCK+V CSRFVN+HML H++ + HCLALSYSDLSVWCF C+AY
Sbjct: 61  DTPCSRCQNPVENWLCLCCKEVLCSRFVNRHMLMHHQQTGHCLALSYSDLSVWCFCCEAY 120

Query: 121 LDAQVIQELRPVHEVAYILKFGEAPP 147
           LDAQ+I +LRP+H+ AYILKFGEAPP
Sbjct: 121 LDAQIILQLRPIHQAAYILKFGEAPP 142

[Close]

BLAST of MELO3C017992.jh1 vs. TAIR 10
Match: AT2G14830.1 (Regulator of Vps4 activity in the MVB pathway protein )

HSP 1 Score: 68.2 bits (165), Expect = 6.5e-12
Identity = 36/66 (54.55%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 1  MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60
          MAE+A SSSS+S+      E+ DE ++ +L GAGSGWV+A  +CDHL +LS DL H+P P
Sbjct: 1  MAEKAPSSSSSSSPPK---EVADETQDWIL-GAGSGWVEARKTCDHLNTLSPDLLHLPTP 60

Query: 61 QTPCSQ 67
           TPCS+
Sbjct: 61 DTPCSR 62

[Close]

BLAST of MELO3C017992.jh1 vs. TAIR 10
Match: AT2G26000.1 (zinc finger (C3HC4-type RING finger) family protein )

HSP 1 Score: 49.3 bits (116), Expect = 3.1e-06
Identity = 20/63 (31.75%), Postives = 32/63 (50.79%), Query Frame = 0


Query: 59  PPQTPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYELSTHCLALSYSDLSVWCFSCD 118
           P  + C  CQ  +  W+C+ C  V C R+   H  +H+E + HC +L      VW ++ D
Sbjct: 213 PENSVCCVCQTTENLWMCVICGVVGCGRYKEGHARRHWEETEHCYSLELETQRVWDYAGD 272

Query: 119 AYL 122
            Y+
Sbjct: 273 NYV 275

[Close]

BLAST of MELO3C017992.jh1 vs. TAIR 10
Match: AT2G26000.2 (zinc finger (C3HC4-type RING finger) family protein )

HSP 1 Score: 49.3 bits (116), Expect = 3.1e-06
Identity = 20/63 (31.75%), Postives = 32/63 (50.79%), Query Frame = 0


Query: 59  PPQTPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYELSTHCLALSYSDLSVWCFSCD 118
           P  + C  CQ  +  W+C+ C  V C R+   H  +H+E + HC +L      VW ++ D
Sbjct: 213 PENSVCCVCQTTENLWMCVICGVVGCGRYKEGHARRHWEETEHCYSLELETQRVWDYAGD 272

Query: 119 AYL 122
            Y+
Sbjct: 273 NYV 275

The following BLAST results are available for this feature:

BLAST of MELO3C017992.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008454385.1	3.44e-106	99.32	PREDICTED: histone deacetylase 6 [Cucumis melo]	[more]
KAA0044348.1	1.40e-105	98.65	histone deacetylase 6 [Cucumis melo var. makuwa]	[more]
XP_004152271.1	8.19e-100	95.27	histone deacetylase 6 [Cucumis sativus] >KGN52775.1 hypothetical protein Csa_015...	[more]
XP_038904979.1	2.55e-89	87.84	histone deacetylase 6 [Benincasa hispida]	[more]
KAG6600290.1	3.20e-83	81.76	Histone deacetylase 6, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of MELO3C017992.jh1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UBN7	7.7e-18	42.20	Histone deacetylase 6 OS=Homo sapiens OX=9606 GN=HDAC6 PE=1 SV=2	[more]
Q9Z2V5	2.9e-17	36.99	Histone deacetylase 6 OS=Mus musculus OX=10090 GN=Hdac6 PE=1 SV=3	[more]
Q20296	9.4e-16	34.67	Histone deacetylase 6 OS=Caenorhabditis elegans OX=6239 GN=hda-6 PE=3 SV=2	[more]
Q54QE6	3.1e-11	45.00	NAD-dependent deacetylase sir2A OS=Dictyostelium discoideum OX=44689 GN=sir2A PE...	[more]
Q9H0E7	2.7e-10	32.14	Ubiquitin carboxyl-terminal hydrolase 44 OS=Homo sapiens OX=9606 GN=USP44 PE=1 S...	[more]

BLAST of MELO3C017992.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BZ94	1.67e-106	99.32	histone deacetylase 6 OS=Cucumis melo OX=3656 GN=LOC103494801 PE=4 SV=1	[more]
A0A5A7TNA2	6.79e-106	98.65	Histone deacetylase 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46...	[more]
A0A0A0KT14	3.97e-100	95.27	UBP-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G000940 PE...	[more]
A0A6J1D695	1.08e-81	81.76	histone deacetylase 6 OS=Momordica charantia OX=3673 GN=LOC111017700 PE=4 SV=1	[more]
A0A061E839	5.03e-77	73.65	Regulator of Vps4 activity in the MVB pathway protein OS=Theobroma cacao OX=3641...	[more]

BLAST of MELO3C017992.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G14830.2	1.2e-55	67.12	Regulator of Vps4 activity in the MVB pathway protein	[more]
AT2G14830.1	6.5e-12	54.55	Regulator of Vps4 activity in the MVB pathway protein	[more]
AT2G26000.1	3.1e-06	31.75	zinc finger (C3HC4-type RING finger) family protein	[more]
AT2G26000.2	3.1e-06	31.75	zinc finger (C3HC4-type RING finger) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001607	Zinc finger, UBP-type	SMART	SM00290	Zf_UBP_1	coord: 63..112 e-value: 1.8E-9 score: 47.5
IPR001607	Zinc finger, UBP-type	PFAM	PF02148	zf-UBP	coord: 64..122 e-value: 1.2E-17 score: 63.9
IPR001607	Zinc finger, UBP-type	PROSITE	PS50271	ZF_UBP	coord: 62..123 score: 17.007502
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 38..145 e-value: 2.5E-29 score: 103.2
None	No IPR available	PANTHER	PTHR47665	HISTONE DEACETYLASE-LIKE PROTEIN	coord: 1..148
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 42..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C017992.jh1.t1	MELO3C017992.jh1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding