MELO3C017896 (gene) Melon (DHL92) v4

Overview


Name	MELO3C017896
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Peptide deformylase
Location	chr07: 25560383 .. 25562832 (+)
RNA-Seq Expression	MELO3C017896
Synteny	MELO3C017896

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTTACCGTCGATTGTGAAGGCTGGTGACCCAGTTTTGCACGAGCCTGCTCGTGAAGTTGATCCTAAGGAAATAGGGTCGGAGAAGATTCAGAAGATAATCGACGATATGGTTTTGACCATGAGGAAAGCTCCTGGAGTCGGTCTTGCAGCTCCCCAGATTGGAATTCCATTAAGGGTCAGTTGAAATTACTTGTGCGTCTAATCATTACTCTGTTTTTTTTTTATTATTTGTTTGCTGTGTGAATTGGAAATGTGAGATTTGGCAGCTGAAATTGTGATTGATGGGGCTGTGTTGTTGAAATGGACGTTGAAATTGTGATTGATGGAGCTGAAATGTCAGTTGAAATTGTTCTCTATTTTCTTGTTCTTGGGGCTGTGCTTGATGGGGTTTCTGGTTTCATTGAGTTCTCCAAACGTGAAATTTCATTGAAAAACCTTGAATTTGGATTCAATATGAAGTGTTTCCTTGTGCATTTGTTGTAGATAATTGTTTTGGAAGATACTAAAGAATATATAAGTTATGCACCTAAGGAGGAGATCAAAGCACAAGATAGGCGCCCCTTTGATCTTCTGGTATGGTTATATATTAATGAGAAAGCAAATTGAATTGAATTTCTATCTTTGTTTTTTATGTTCACCAATCAATTTCTTAGTTTTATTGAGTCAGGTGATCATAAACCCAAAGCTAAAAAGTAAAAGCAACAAGACTGCATTGTTTTTTGAAGGGTGCCTCAGGTAAGATGCAGATTGGCAATCCACTTTTCTCTCTCAGTTCTTTCTCTGAAGTGGTTTGCAAAACCAATTTATTGTTTCTCTTCCTTTCCCTTTCCCTCTTCTTCCTTGCATGCTCTCAGGTCCTATCTTGCTATTTTGAGAAATGGAAAATGAACTTCCAAAGTACTAGCTCGATCATTTCTTAAAAGTTAGTGTACTTTTTCTCTTTATCCTAGAAAATATGTGTAGCGAATAAAAATGAACAAAATTAAATCATCTCGAGTTGACCTAGTTGTTAGGGAACGACCTTGACAAATGGCTAAGAGTTTATGAGTTCAATTCATTGTGACCACCTACCCAGGTTTTAAATAACCAATAAGTTTCTTTGACATTTAAATGTTGTAGGATTAAGCAGGTTGTTTATGAGATTAGTCCAAGTGTGCGTAAGTTGGTCCTAATACTCACAAATATTTAAAAAAAAAAAAAAAAAAGAAAAAAGAAGAGAAAAAATCAAACAAATGTGTGAGTGAAATTTATATGCTTCTGTGTACAGGCTCCATCCTACAATAAAAATGATGCCACAGTAGCATTGTTTATCTACACGTTGAGATTATATAACTAGTCTCTTCAATGTTCAATTTGACTCAATGTTAAAACATTTATGTGGTTCTAAAGCCGTGGATAGGCAACAGGGGCTCAATCAATCCAACGTAGAAATTTCTCTTGGATTCAATTGAGTTAATGATCAGTGGCTTGCTTGCCCTCCTAAACAAAGGCACACCACTTTGTGCAAGCTGTTATGTACTAATATTCACTTCTAACAGACTAATTAATATTGACCTCTCAATCAACACTTCTAATATGTATGAAAACCAAAAGTCATATTCCTACCGTAAAACGATGCCATAGTAGCGTTGTTTATTTACACTTTGATATTATAGTTTATGAGAAAGATGAACTGTTTAGTCCCTTCTTTCATTTAGATAATCTGGTTGATGTGAAAGTATAAGCTTTCTTGCTCTTTTCTAAGTTTTCCTTTTAACAGATTGTTTCCAGTTGAGGCTGTATCTGAAGTCTATTCTTTACTATCATTAATGAAATCACTATTGTCTTACTTAAGGATTCCTCTCTCTGTCTGTGTGTGTTCTTTCATGTCTTGTCATCCATGATTTATTCCTTTATTTTTCTACCTTGTAGTGTCGATGGATTTAGAGCAGTGGTAGAGCGATATCTTGACGTTGAGATAGCTGGTTTCGATCGAAATGGGAATCCTATCAAGGTGGACGCTTCAGGATGGCAGGCTCGAATCTTACAGCACGAATGTGATCATTTGGATGGAACTCTTTATGTCGACAAGATGGTGCCTCGAACGTTCAGAACAGCTGAAAATTTGACTTTACCTCTTGCTGAGGGTTGCCCCAAGCTTGGAGTTCGCTAACTCCAGCCTGCATTGATATTAGCCTCGAGTTCGTTAACATTGGATATCCAGATTGGCTTTATATCCACCGCCAAGGAAGGAAAGGCGACTCAGAGAATTGGAATTTAACTGAATTTTTTTATTACATTCAGGCAAGTGTGTTTTGTTGAATTGAAATATACTCTCTGTTTGATTGATTTATGACTCTGCATTTGGTTGGAAATGAAAGCAAGGAGTTTGTGAAAGGGTTCTCTTTCTCTCATGTATAGTGAAACTTGAAAGATATCAAAGGCAGACACTAATTCAGCTGGAAA

mRNA sequence

ATGAGCTTACCGTCGATTGTGAAGGCTGGTGACCCAGTTTTGCACGAGCCTGCTCGTGAAGTTGATCCTAAGGAAATAGGGTCGGAGAAGATTCAGAAGATAATCGACGATATGGTTTTGACCATGAGGAAAGCTCCTGGAGTCGGTCTTGCAGCTCCCCAGATTGGAATTCCATTAAGGGTGATCATAAACCCAAAGCTAAAAAGTAAAAGCAACAAGACTGCATTGTTTTTTGAAGGGTGCCTCAGTGTCGATGGATTTAGAGCAGTGGTAGAGCGATATCTTGACGTTGAGATAGCTGGTTTCGATCGAAATGGGAATCCTATCAAGGTGGACGCTTCAGGATGGCAGGCTCGAATCTTACAGCACGAATGTGATCATTTGGATGGAACTCTTTATGTCGACAAGATGGTGCCTCGAACGTTCAGAACAGCTGAAAATTTGACTTTACCTCTTGCTGAGGGTTGCCCCAAGCTTGGAGTTCGCTAACTCCAGCCTGCATTGATATTAGCCTCGAGTTCGTTAACATTGGATATCCAGATTGGCTTTATATCCACCGCCAAGGAAGGAAAGGCGACTCAGAGAATTGGAATTTAACTGAATTTTTTTATTACATTCAGGCAAGTGTGTTTTGTTGAATTGAAATATACTCTCTGTTTGATTGATTTATGACTCTGCATTTGGTTGGAAATGAAAGCAAGGAGTTTGTGAAAGGGTTCTCTTTCTCTCATGTATAGTGAAACTTGAAAGATATCAAAGGCAGACACTAATTCAGCTGGAAA

Coding sequence (CDS)

ATGAGCTTACCGTCGATTGTGAAGGCTGGTGACCCAGTTTTGCACGAGCCTGCTCGTGAAGTTGATCCTAAGGAAATAGGGTCGGAGAAGATTCAGAAGATAATCGACGATATGGTTTTGACCATGAGGAAAGCTCCTGGAGTCGGTCTTGCAGCTCCCCAGATTGGAATTCCATTAAGGGTGATCATAAACCCAAAGCTAAAAAGTAAAAGCAACAAGACTGCATTGTTTTTTGAAGGGTGCCTCAGTGTCGATGGATTTAGAGCAGTGGTAGAGCGATATCTTGACGTTGAGATAGCTGGTTTCGATCGAAATGGGAATCCTATCAAGGTGGACGCTTCAGGATGGCAGGCTCGAATCTTACAGCACGAATGTGATCATTTGGATGGAACTCTTTATGTCGACAAGATGGTGCCTCGAACGTTCAGAACAGCTGAAAATTTGACTTTACCTCTTGCTGAGGGTTGCCCCAAGCTTGGAGTTCGCTAA

Protein sequence

MSLPSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKAPGVGLAAPQIGIPLRVIINPKLKSKSNKTALFFEGCLSVDGFRAVVERYLDVEIAGFDRNGNPIKVDASGWQARILQHECDHLDGTLYVDKMVPRTFRTAENLTLPLAEGCPKLGVR

Homology

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BLAST of MELO3C017896 vs. NCBI nr
Match: XP_008454248.1 (PREDICTED: LOW QUALITY PROTEIN: peptide deformylase 1A, chloroplastic/mitochondrial [Cucumis melo])

HSP 1 Score: 317.4 bits (812), Expect = 7.2e-83
Identity = 162/192 (84.38%), Postives = 162/192 (84.38%), Query Frame = 0


Query: 1   MSLPSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKAPGVGLAAPQIGIPLR 60
           MSLPSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKAPGVGLAAPQIGIPLR
Sbjct: 76  MSLPSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKAPGVGLAAPQIGIPLR 135

Query: 61  ------------------------------VIINPKLKSKSNKTALFFEGCLSVDGFRAV 120
                                         VIINPKLKSKSNKTALFFEGCLSVDGFRAV
Sbjct: 136 IIVLEDTKEYISYAPKEEIKAQDRRPFDLLVIINPKLKSKSNKTALFFEGCLSVDGFRAV 195

Query: 121 VERYLDVEIAGFDRNGNPIKVDASGWQARILQHECDHLDGTLYVDKMVPRTFRTAENLTL 163
           VERYLDVEIAGFDRNGNPIKVDASGWQARILQHECDHLDGTLYVDKMVPRTFRTAENLTL
Sbjct: 196 VERYLDVEIAGFDRNGNPIKVDASGWQARILQHECDHLDGTLYVDKMVPRTFRTAENLTL 255

[Close]

BLAST of MELO3C017896 vs. NCBI nr
Match: KAA0044431.1 (peptide deformylase 1A [Cucumis melo var. makuwa] >TYK29558.1 peptide deformylase 1A [Cucumis melo var. makuwa])

HSP 1 Score: 317.4 bits (812), Expect = 7.2e-83
Identity = 162/192 (84.38%), Postives = 162/192 (84.38%), Query Frame = 0


Query: 1   MSLPSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKAPGVGLAAPQIGIPLR 60
           MSLPSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKAPGVGLAAPQIGIPLR
Sbjct: 76  MSLPSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKAPGVGLAAPQIGIPLR 135

Query: 61  ------------------------------VIINPKLKSKSNKTALFFEGCLSVDGFRAV 120
                                         VIINPKLKSKSNKTALFFEGCLSVDGFRAV
Sbjct: 136 IIVLEDTKEYISYAPKEEIKAQDRRPFDLLVIINPKLKSKSNKTALFFEGCLSVDGFRAV 195

Query: 121 VERYLDVEIAGFDRNGNPIKVDASGWQARILQHECDHLDGTLYVDKMVPRTFRTAENLTL 163
           VERYLDVEIAGFDRNGNPIKVDASGWQARILQHECDHLDGTLYVDKMVPRTFRTAENLTL
Sbjct: 196 VERYLDVEIAGFDRNGNPIKVDASGWQARILQHECDHLDGTLYVDKMVPRTFRTAENLTL 255

[Close]

BLAST of MELO3C017896 vs. NCBI nr
Match: XP_004152208.2 (peptide deformylase 1A, chloroplastic/mitochondrial [Cucumis sativus] >KGN52877.1 hypothetical protein Csa_015090 [Cucumis sativus])

HSP 1 Score: 311.2 bits (796), Expect = 5.2e-81
Identity = 156/192 (81.25%), Postives = 160/192 (83.33%), Query Frame = 0


Query: 1   MSLPSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKAPGVGLAAPQIGIPLR 60
           MSLPSIVKAGDPVLHEPAREVDPKEIGSEK+QKIIDDM+LTMRKAPGVGLAAPQIGIPLR
Sbjct: 76  MSLPSIVKAGDPVLHEPAREVDPKEIGSEKVQKIIDDMILTMRKAPGVGLAAPQIGIPLR 135

Query: 61  ------------------------------VIINPKLKSKSNKTALFFEGCLSVDGFRAV 120
                                         VIINPKLKSKSNKTALFFEGCLSVDGFRAV
Sbjct: 136 IIVLEDTKEYISYAPKEEIKAQDRRSFDLLVIINPKLKSKSNKTALFFEGCLSVDGFRAV 195

Query: 121 VERYLDVEIAGFDRNGNPIKVDASGWQARILQHECDHLDGTLYVDKMVPRTFRTAENLTL 163
           VERYLDVE+AGFDR+GNPIKVDASGWQARILQHECDHLDGTLYVDKMVPRTFRT ENLTL
Sbjct: 196 VERYLDVEVAGFDRDGNPIKVDASGWQARILQHECDHLDGTLYVDKMVPRTFRTTENLTL 255

[Close]

BLAST of MELO3C017896 vs. NCBI nr
Match: XP_038878019.1 (peptide deformylase 1A, chloroplastic/mitochondrial [Benincasa hispida])

HSP 1 Score: 302.4 bits (773), Expect = 2.4e-78
Identity = 151/192 (78.65%), Postives = 159/192 (82.81%), Query Frame = 0


Query: 1   MSLPSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKAPGVGLAAPQIGIPLR 60
           M LP+IVKAGDPVLHEPAREVDPKEIGSEKIQKIID+MVL MRKAPG+GLAAPQIGIPLR
Sbjct: 76  MGLPTIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDNMVLAMRKAPGIGLAAPQIGIPLR 135

Query: 61  ------------------------------VIINPKLKSKSNKTALFFEGCLSVDGFRAV 120
                                         VIINPKLKSKSNKTALFFEGC+SVDGFRAV
Sbjct: 136 IIVLEDTKEYISYAPKEEIKAQDRRPFDLLVIINPKLKSKSNKTALFFEGCISVDGFRAV 195

Query: 121 VERYLDVEIAGFDRNGNPIKVDASGWQARILQHECDHLDGTLYVDKMVPRTFRTAENLTL 163
           VERYL+VE+AGFDR+G+PIKVDASGWQARILQHECDHLDGTLYVDKMVPRTFRTAENLTL
Sbjct: 196 VERYLEVEVAGFDRDGSPIKVDASGWQARILQHECDHLDGTLYVDKMVPRTFRTAENLTL 255

[Close]

BLAST of MELO3C017896 vs. NCBI nr
Match: XP_022153571.1 (peptide deformylase 1A, chloroplastic/mitochondrial [Momordica charantia])

HSP 1 Score: 298.9 bits (764), Expect = 2.6e-77
Identity = 150/192 (78.12%), Postives = 156/192 (81.25%), Query Frame = 0


Query: 1   MSLPSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKAPGVGLAAPQIGIPLR 60
           MSLP+IVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVL MRKAPGVGLAAPQIGIPLR
Sbjct: 78  MSLPTIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLAMRKAPGVGLAAPQIGIPLR 137

Query: 61  ------------------------------VIINPKLKSKSNKTALFFEGCLSVDGFRAV 120
                                         VI+NPKLK KSNKTALFFEGCLSVDGFRAV
Sbjct: 138 IIVLEDTQEYISYAPKEEIKAQDRRPFDLLVIVNPKLKCKSNKTALFFEGCLSVDGFRAV 197

Query: 121 VERYLDVEIAGFDRNGNPIKVDASGWQARILQHECDHLDGTLYVDKMVPRTFRTAENLTL 163
           VER+LDVE+ G DR+GNPIKVDASGWQARILQHECDHLDGTLYVDKM+PRTFR AENLTL
Sbjct: 198 VERHLDVEVVGLDRDGNPIKVDASGWQARILQHECDHLDGTLYVDKMLPRTFRMAENLTL 257

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BLAST of MELO3C017896 vs. ExPASy Swiss-Prot
Match: Q9FUZ0 (Peptide deformylase 1A, chloroplastic OS=Solanum lycopersicum OX=4081 GN=PDF1A PE=2 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 8.9e-68
Identity = 129/190 (67.89%), Postives = 143/190 (75.26%), Query Frame = 0


Query: 2   SLPSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKAPGVGLAAPQIGIPLR- 61
           ++P IVKAGDPVLHEP++++  +EIGSE+IQKII++MV  MR APGVGLAAPQIGIPL+ 
Sbjct: 87  AMPDIVKAGDPVLHEPSQDIPLEEIGSERIQKIIEEMVKVMRNAPGVGLAAPQIGIPLKI 146

Query: 62  -----------------------------VIINPKLKSKSNKTALFFEGCLSVDGFRAVV 121
                                        VIINPKLK K NKTALFFEGCLSVDGFRAVV
Sbjct: 147 IVLEDTNEYISYAPKDETKAQDRRPFGLLVIINPKLKKKGNKTALFFEGCLSVDGFRAVV 206

Query: 122 ERYLDVEIAGFDRNGNPIKVDASGWQARILQHECDHLDGTLYVDKMVPRTFRTAENLTLP 162
           ER+L+VE+ G DRNG  IKVDASGWQARILQHE DHLDGTLYVDKM PRTFRT ENL LP
Sbjct: 207 ERHLEVEVTGLDRNGKAIKVDASGWQARILQHEYDHLDGTLYVDKMAPRTFRTVENLDLP 266

[Close]

BLAST of MELO3C017896 vs. ExPASy Swiss-Prot
Match: Q9FV53 (Peptide deformylase 1A, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PDF1A PE=1 SV=3)

HSP 1 Score: 255.0 bits (650), Expect = 5.8e-67
Identity = 126/190 (66.32%), Postives = 140/190 (73.68%), Query Frame = 0


Query: 1   MSLPSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKAPGVGLAAPQIGIPLR 60
           + LP IV +GDPVLHE AREVDP EIGSE+IQKIIDDM+  MR APGVGLAAPQIG+PLR
Sbjct: 78  VDLPEIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAPGVGLAAPQIGVPLR 137

Query: 61  VI------------------------------INPKLKSKSNKTALFFEGCLSVDGFRAV 120
           +I                              +NP LK +SNK ALFFEGCLSVDGFRA 
Sbjct: 138 IIVLEDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGCLSVDGFRAA 197

Query: 121 VERYLDVEIAGFDRNGNPIKVDASGWQARILQHECDHLDGTLYVDKMVPRTFRTAENLTL 161
           VERYL+V + G+DR G  I+V+ASGWQARILQHECDHLDG LYVDKMVPRTFRT +NL L
Sbjct: 198 VERYLEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKMVPRTFRTVDNLDL 257

[Close]

BLAST of MELO3C017896 vs. ExPASy Swiss-Prot
Match: B6RGY0 (Peptide deformylase 1A, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PDF1A PE=2 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 7.8e-64
Identity = 120/189 (63.49%), Postives = 138/189 (73.02%), Query Frame = 0


Query: 4   PSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKAPGVGLAAPQIGIPLR--- 63
           P  VKAGDPVLHEPA++V P +I SEK+Q +ID MV  MRKAPGVGLAAPQIG+PL+   
Sbjct: 72  PGTVKAGDPVLHEPAQDVAPGDIPSEKVQGVIDRMVAVMRKAPGVGLAAPQIGVPLKIIV 131

Query: 64  ---------------------------VIINPKLKSKSNKTALFFEGCLSVDGFRAVVER 123
                                      VIINPKLK+ S +TALFFEGCLSVDG+RA+VER
Sbjct: 132 LEDTQEYISYAPKKDIEAQDRRPFDLLVIINPKLKTTSKRTALFFEGCLSVDGYRALVER 191

Query: 124 YLDVEIAGFDRNGNPIKVDASGWQARILQHECDHLDGTLYVDKMVPRTFRTAENLTLPLA 163
           +LDVE++G DRNG PIKV+ASGWQARILQHECDHL+GTLYVD MVPRTFR  +NL LPL 
Sbjct: 192 HLDVEVSGLDRNGRPIKVEASGWQARILQHECDHLEGTLYVDTMVPRTFRIVDNLDLPLP 251

[Close]

BLAST of MELO3C017896 vs. ExPASy Swiss-Prot
Match: Q7NJV3 (Peptide deformylase 1 OS=Gloeobacter violaceus (strain ATCC 29082 / PCC 7421) OX=251221 GN=def1 PE=3 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.0e-31
Identity = 73/172 (42.44%), Postives = 96/172 (55.81%), Query Frame = 0


Query: 6   IVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKAPGVGLAAPQIG--------- 65
           IVK GDPVL   A+ ++  EI SE IQ++I  M   MR+APGVGLAAPQ+G         
Sbjct: 48  IVKTGDPVLRLTAKPLNSDEIQSEAIQQLIAAMAERMREAPGVGLAAPQVGVSVQLVVIE 107

Query: 66  ---------------------IPLRVIINPKLKSKSNKTALFFEGCLSVDGFRAVVERYL 125
                                +P  V+INP L  +  ++A+FFEGCLS+ G++ +V R  
Sbjct: 108 DRPEYIERLSGAERREREREPVPFHVLINPVLSVEGEESAVFFEGCLSIPGYQGLVARAR 167

Query: 126 DVEIAGFDRNGNPIKVDASGWQARILQHECDHLDGTLYVDKMVPRTFRTAEN 148
            V +   D    P+ + A GW ARILQHE DHL+G L VD+M  +TF T EN
Sbjct: 168 VVRVEALDERAAPVVIRAHGWYARILQHEIDHLNGLLCVDRMDLQTFSTLEN 219

[Close]

BLAST of MELO3C017896 vs. ExPASy Swiss-Prot
Match: Q825U9 (Peptide deformylase 3 OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680) OX=227882 GN=def3 PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.0e-28
Identity = 67/179 (37.43%), Postives = 97/179 (54.19%), Query Frame = 0


Query: 6   IVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKAPGVGLAAPQIGI-------- 65
           IV AGDPVL   A   D  ++G   + + ++ + LTM  APGVGLAAPQ+G+        
Sbjct: 35  IVAAGDPVLRRGAEPYD-GQLGPGLLARFVEALRLTMHAAPGVGLAAPQVGVGLRIAVIE 94

Query: 66  ------------------PLRVIINPKLKSKSNKTALFFEGCLSVDGFRAVVERYLDVEI 125
                             P RV++NP  ++  +  A FFEGCLSV G++AVV R   V +
Sbjct: 95  DPAPVPEEVGAVRGRVPQPFRVLVNPSYEAVGSDRAAFFEGCLSVPGWQAVVARPARVRL 154

Query: 126 AGFDRNGNPIKVDASGWQARILQHECDHLDGTLYVDKMVPRTFRTAENLTLPLAEGCPK 159
              D +G  +  + +GW ARI+QHE DHLDG LY+D+   R+  + E + L  ++  P+
Sbjct: 155 TALDEHGRAVDEEFTGWPARIVQHETDHLDGMLYLDRAELRSLSSNEAMALRWSQPTPE 212

[Close]

BLAST of MELO3C017896 vs. ExPASy TrEMBL
Match: A0A5D3E1C7 (Peptide deformylase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001640 PE=3 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 3.5e-83
Identity = 162/192 (84.38%), Postives = 162/192 (84.38%), Query Frame = 0


Query: 1   MSLPSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKAPGVGLAAPQIGIPLR 60
           MSLPSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKAPGVGLAAPQIGIPLR
Sbjct: 76  MSLPSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKAPGVGLAAPQIGIPLR 135

Query: 61  ------------------------------VIINPKLKSKSNKTALFFEGCLSVDGFRAV 120
                                         VIINPKLKSKSNKTALFFEGCLSVDGFRAV
Sbjct: 136 IIVLEDTKEYISYAPKEEIKAQDRRPFDLLVIINPKLKSKSNKTALFFEGCLSVDGFRAV 195

Query: 121 VERYLDVEIAGFDRNGNPIKVDASGWQARILQHECDHLDGTLYVDKMVPRTFRTAENLTL 163
           VERYLDVEIAGFDRNGNPIKVDASGWQARILQHECDHLDGTLYVDKMVPRTFRTAENLTL
Sbjct: 196 VERYLDVEIAGFDRNGNPIKVDASGWQARILQHECDHLDGTLYVDKMVPRTFRTAENLTL 255

[Close]

BLAST of MELO3C017896 vs. ExPASy TrEMBL
Match: A0A1S3BY63 (Peptide deformylase OS=Cucumis melo OX=3656 GN=LOC103494711 PE=3 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 3.5e-83
Identity = 162/192 (84.38%), Postives = 162/192 (84.38%), Query Frame = 0


Query: 1   MSLPSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKAPGVGLAAPQIGIPLR 60
           MSLPSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKAPGVGLAAPQIGIPLR
Sbjct: 76  MSLPSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKAPGVGLAAPQIGIPLR 135

Query: 61  ------------------------------VIINPKLKSKSNKTALFFEGCLSVDGFRAV 120
                                         VIINPKLKSKSNKTALFFEGCLSVDGFRAV
Sbjct: 136 IIVLEDTKEYISYAPKEEIKAQDRRPFDLLVIINPKLKSKSNKTALFFEGCLSVDGFRAV 195

Query: 121 VERYLDVEIAGFDRNGNPIKVDASGWQARILQHECDHLDGTLYVDKMVPRTFRTAENLTL 163
           VERYLDVEIAGFDRNGNPIKVDASGWQARILQHECDHLDGTLYVDKMVPRTFRTAENLTL
Sbjct: 196 VERYLDVEIAGFDRNGNPIKVDASGWQARILQHECDHLDGTLYVDKMVPRTFRTAENLTL 255

[Close]

BLAST of MELO3C017896 vs. ExPASy TrEMBL
Match: A0A0A0KWR7 (Peptide deformylase OS=Cucumis sativus OX=3659 GN=Csa_4G004880 PE=3 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 2.5e-81
Identity = 156/192 (81.25%), Postives = 160/192 (83.33%), Query Frame = 0


Query: 1   MSLPSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKAPGVGLAAPQIGIPLR 60
           MSLPSIVKAGDPVLHEPAREVDPKEIGSEK+QKIIDDM+LTMRKAPGVGLAAPQIGIPLR
Sbjct: 76  MSLPSIVKAGDPVLHEPAREVDPKEIGSEKVQKIIDDMILTMRKAPGVGLAAPQIGIPLR 135

Query: 61  ------------------------------VIINPKLKSKSNKTALFFEGCLSVDGFRAV 120
                                         VIINPKLKSKSNKTALFFEGCLSVDGFRAV
Sbjct: 136 IIVLEDTKEYISYAPKEEIKAQDRRSFDLLVIINPKLKSKSNKTALFFEGCLSVDGFRAV 195

Query: 121 VERYLDVEIAGFDRNGNPIKVDASGWQARILQHECDHLDGTLYVDKMVPRTFRTAENLTL 163
           VERYLDVE+AGFDR+GNPIKVDASGWQARILQHECDHLDGTLYVDKMVPRTFRT ENLTL
Sbjct: 196 VERYLDVEVAGFDRDGNPIKVDASGWQARILQHECDHLDGTLYVDKMVPRTFRTTENLTL 255

[Close]

BLAST of MELO3C017896 vs. ExPASy TrEMBL
Match: A0A6J1DL13 (Peptide deformylase OS=Momordica charantia OX=3673 GN=LOC111021042 PE=3 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.3e-77
Identity = 150/192 (78.12%), Postives = 156/192 (81.25%), Query Frame = 0


Query: 1   MSLPSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKAPGVGLAAPQIGIPLR 60
           MSLP+IVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVL MRKAPGVGLAAPQIGIPLR
Sbjct: 78  MSLPTIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLAMRKAPGVGLAAPQIGIPLR 137

Query: 61  ------------------------------VIINPKLKSKSNKTALFFEGCLSVDGFRAV 120
                                         VI+NPKLK KSNKTALFFEGCLSVDGFRAV
Sbjct: 138 IIVLEDTQEYISYAPKEEIKAQDRRPFDLLVIVNPKLKCKSNKTALFFEGCLSVDGFRAV 197

Query: 121 VERYLDVEIAGFDRNGNPIKVDASGWQARILQHECDHLDGTLYVDKMVPRTFRTAENLTL 163
           VER+LDVE+ G DR+GNPIKVDASGWQARILQHECDHLDGTLYVDKM+PRTFR AENLTL
Sbjct: 198 VERHLDVEVVGLDRDGNPIKVDASGWQARILQHECDHLDGTLYVDKMLPRTFRMAENLTL 257

[Close]

BLAST of MELO3C017896 vs. ExPASy TrEMBL
Match: A0A6A4MKW7 (Peptide deformylase (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_00325 PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 6.0e-75
Identity = 135/159 (84.91%), Postives = 147/159 (92.45%), Query Frame = 0


Query: 4   PSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKAPGVGLAAPQIGIPLRVII 63
           P  VKAGDPVLHEPAREV P+EIGSE+IQK+IDDMV  MRKAPGVGLAAPQIGIPL+VI+
Sbjct: 53  PETVKAGDPVLHEPAREVPPEEIGSERIQKVIDDMVEVMRKAPGVGLAAPQIGIPLKVIV 112

Query: 64  NPKLKSKSNKTALFFEGCLSVDGFRAVVERYLDVEIAGFDRNGNPIKVDASGWQARILQH 123
           NPK+K+KSNKTALFFEGCLSVDGFRAVVERYL+VE+ G DR G PIKVDASGWQARILQH
Sbjct: 113 NPKIKNKSNKTALFFEGCLSVDGFRAVVERYLEVEVTGLDRKGQPIKVDASGWQARILQH 172

Query: 124 ECDHLDGTLYVDKMVPRTFRTAENLTLPLAEGCPKLGVR 163
           ECDHL+GTLY+DKMVPRTFRT +NL LPLA GCPKLGVR
Sbjct: 173 ECDHLEGTLYIDKMVPRTFRTVDNLDLPLAIGCPKLGVR 211

[Close]

BLAST of MELO3C017896 vs. TAIR 10
Match: AT1G15390.1 (peptide deformylase 1A )

HSP 1 Score: 255.0 bits (650), Expect = 4.1e-68
Identity = 126/190 (66.32%), Postives = 140/190 (73.68%), Query Frame = 0


Query: 1   MSLPSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKAPGVGLAAPQIGIPLR 60
           + LP IV +GDPVLHE AREVDP EIGSE+IQKIIDDM+  MR APGVGLAAPQIG+PLR
Sbjct: 78  VDLPEIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAPGVGLAAPQIGVPLR 137

Query: 61  VI------------------------------INPKLKSKSNKTALFFEGCLSVDGFRAV 120
           +I                              +NP LK +SNK ALFFEGCLSVDGFRA 
Sbjct: 138 IIVLEDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGCLSVDGFRAA 197

Query: 121 VERYLDVEIAGFDRNGNPIKVDASGWQARILQHECDHLDGTLYVDKMVPRTFRTAENLTL 161
           VERYL+V + G+DR G  I+V+ASGWQARILQHECDHLDG LYVDKMVPRTFRT +NL L
Sbjct: 198 VERYLEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKMVPRTFRTVDNLDL 257

[Close]

BLAST of MELO3C017896 vs. TAIR 10
Match: AT5G14660.1 (peptide deformylase 1B )

HSP 1 Score: 95.5 bits (236), Expect = 4.1e-20
Identity = 54/148 (36.49%), Postives = 77/148 (52.03%), Query Frame = 0


Query: 6   IVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKAPGVGLAAPQIGIPLR----- 65
           IV+  DP+L    + +D   I  E ++ ++D M   M K  G+GL+APQ+G+ ++     
Sbjct: 83  IVEYPDPILRAKNKRID---IFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFN 142

Query: 66  -----------VIINPKLKSKSNKTALFFEGCLSVDGFRAVVERYLDVEIAGFDRNGNPI 125
                      V++NPK+K  S+K   F EGCLS  G  A V R   V+I   D  G   
Sbjct: 143 PAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERF 202

Query: 126 KVDASGWQARILQHECDHLDGTLYVDKM 138
            +  S   ARI QHE DHL+G L+ D+M
Sbjct: 203 SISLSRLPARIFQHEYDHLEGVLFFDRM 227

[Close]

BLAST of MELO3C017896 vs. TAIR 10
Match: AT5G14660.2 (peptide deformylase 1B )

HSP 1 Score: 95.5 bits (236), Expect = 4.1e-20
Identity = 54/148 (36.49%), Postives = 77/148 (52.03%), Query Frame = 0


Query: 6   IVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKAPGVGLAAPQIGIPLR----- 65
           IV+  DP+L    + +D   I  E ++ ++D M   M K  G+GL+APQ+G+ ++     
Sbjct: 83  IVEYPDPILRAKNKRID---IFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFN 142

Query: 66  -----------VIINPKLKSKSNKTALFFEGCLSVDGFRAVVERYLDVEIAGFDRNGNPI 125
                      V++NPK+K  S+K   F EGCLS  G  A V R   V+I   D  G   
Sbjct: 143 PAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERF 202

Query: 126 KVDASGWQARILQHECDHLDGTLYVDKM 138
            +  S   ARI QHE DHL+G L+ D+M
Sbjct: 203 SISLSRLPARIFQHEYDHLEGVLFFDRM 227

The following BLAST results are available for this feature:

BLAST of MELO3C017896 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008454248.1	7.2e-83	84.38	PREDICTED: LOW QUALITY PROTEIN: peptide deformylase 1A, chloroplastic/mitochondr...	[more]
KAA0044431.1	7.2e-83	84.38	peptide deformylase 1A [Cucumis melo var. makuwa] >TYK29558.1 peptide deformylas...	[more]
XP_004152208.2	5.2e-81	81.25	peptide deformylase 1A, chloroplastic/mitochondrial [Cucumis sativus] >KGN52877....	[more]
XP_038878019.1	2.4e-78	78.65	peptide deformylase 1A, chloroplastic/mitochondrial [Benincasa hispida]	[more]
XP_022153571.1	2.6e-77	78.13	peptide deformylase 1A, chloroplastic/mitochondrial [Momordica charantia]	[more]

BLAST of MELO3C017896 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FUZ0	8.9e-68	67.89	Peptide deformylase 1A, chloroplastic OS=Solanum lycopersicum OX=4081 GN=PDF1A P...	[more]
Q9FV53	5.8e-67	66.32	Peptide deformylase 1A, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3...	[more]
B6RGY0	7.8e-64	63.49	Peptide deformylase 1A, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
Q7NJV3	3.0e-31	42.44	Peptide deformylase 1 OS=Gloeobacter violaceus (strain ATCC 29082 / PCC 7421) OX...	[more]
Q825U9	4.0e-28	37.43	Peptide deformylase 3 OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492...	[more]

BLAST of MELO3C017896 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E1C7	3.5e-83	84.38	Peptide deformylase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G...	[more]
A0A1S3BY63	3.5e-83	84.38	Peptide deformylase OS=Cucumis melo OX=3656 GN=LOC103494711 PE=3 SV=1	[more]
A0A0A0KWR7	2.5e-81	81.25	Peptide deformylase OS=Cucumis sativus OX=3659 GN=Csa_4G004880 PE=3 SV=1	[more]
A0A6J1DL13	1.3e-77	78.13	Peptide deformylase OS=Momordica charantia OX=3673 GN=LOC111021042 PE=3 SV=1	[more]
A0A6A4MKW7	6.0e-75	84.91	Peptide deformylase (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_...	[more]

BLAST of MELO3C017896 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15390.1	4.1e-68	66.32	peptide deformylase 1A	[more]
AT5G14660.1	4.1e-20	36.49	peptide deformylase 1B	[more]
AT5G14660.2	4.1e-20	36.49	peptide deformylase 1B	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023635	Peptide deformylase	PRINTS	PR01576	PDEFORMYLASE	coord: 79..90 score: 58.95 coord: 91..109 score: 32.46 coord: 36..65 score: 46.67 coord: 110..139 score: 45.74
IPR023635	Peptide deformylase	PIRSF	PIRSF004749	Pep_def	coord: 1..158 e-value: 4.1E-44 score: 148.4
IPR023635	Peptide deformylase	PFAM	PF01327	Pep_deformylase	coord: 5..140 e-value: 3.5E-41 score: 140.5
IPR023635	Peptide deformylase	TIGRFAM	TIGR00079	TIGR00079	coord: 6..141 e-value: 3.2E-33 score: 112.5
IPR023635	Peptide deformylase	PANTHER	PTHR10458	PEPTIDE DEFORMYLASE	coord: 59..162 coord: 2..63
IPR023635	Peptide deformylase	HAMAP	MF_00163	Pep_deformylase	coord: 2..148 score: 24.199497
IPR023635	Peptide deformylase	CDD	cd00487	Pep_deformylase	coord: 6..133 e-value: 2.63191E-64 score: 191.545
IPR036821	Peptide deformylase superfamily	GENE3D	3.90.45.10	Peptide deformylase	coord: 62..161 e-value: 3.5E-35 score: 122.8 coord: 1..61 e-value: 1.6E-21 score: 78.2
IPR036821	Peptide deformylase superfamily	SUPERFAMILY	56420	Peptide deformylase	coord: 5..145
None	No IPR available	PANTHER	PTHR10458:SF17	PEPTIDE DEFORMYLASE	coord: 59..162 coord: 2..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C017896.1	MELO3C017896.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0042586	peptide deformylase activity