MELO3C017893 (gene) Melon (DHL92) v4

Overview


Name	MELO3C017893
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	pentatricopeptide repeat-containing protein At1g52640, mitochondrial
Location	chr07: 25550434 .. 25550847 (+)
RNA-Seq Expression	MELO3C017893
Synteny	MELO3C017893

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGATTGATGAGGGAATACCTCCATATATCGCTACTGTTGAGTTGTTGAGGGACCGACTTCTGGGGATAGGGTTCAAGGATCAGGTTGCGATACTTGGTGACAAAATGAAACGAAGCACTTCTTGCTCCATACAAGAGCTTGCAAACGTGATGAGTGGTGGAAAATGTCGCGAGGCTCAGTCGACGTTAAAAAATGAAGAGACGGAGCTTGAAAGTGACTGAAGTATAGAGTGTCAGCCAGAGGCATCTTTGTATACAAAAGATTAAATTACATCAATCTTCCAAATACGGGCTTTTTGTAATTTAGTAACACCTAGAGTAGGGGAGGGATACAGATTTGGATGTTGTTCACCACATAATTTGATTGATTCACGGTGATTTTGCTAAAAATAAAACATTTTGTTTCAAAAG

mRNA sequence

ATGATGATTGATGAGGGAATACCTCCATATATCGCTACTGTTGAGTTGTTGAGGGACCGACTTCTGGGGATAGGGTTCAAGGATCAGGTTGCGATACTTGGTGACAAAATGAAACGAAGCACTTCTTGCTCCATACAAGAGCTTGCAAACGTGATGAGTGGTGGAAAATGTCGCGAGGCTCAGTCGACGTTAAAAAATGAAGAGACGGAGCTTGAAAGTGACTGAAGTATAGAGTGTCAGCCAGAGGCATCTTTGTATACAAAAGATTAAATTACATCAATCTTCCAAATACGGGCTTTTTGTAATTTAGTAACACCTAGAGTAGGGGAGGGATACAGATTTGGATGTTGTTCACCACATAATTTGATTGATTCACGGTGATTTTGCTAAAAATAAAACATTTTGTTTCAAAAG

Coding sequence (CDS)

ATGATGATTGATGAGGGAATACCTCCATATATCGCTACTGTTGAGTTGTTGAGGGACCGACTTCTGGGGATAGGGTTCAAGGATCAGGTTGCGATACTTGGTGACAAAATGAAACGAAGCACTTCTTGCTCCATACAAGAGCTTGCAAACGTGATGAGTGGTGGAAAATGTCGCGAGGCTCAGTCGACGTTAAAAAATGAAGAGACGGAGCTTGAAAGTGACTGA

Protein sequence

MMIDEGIPPYIATVELLRDRLLGIGFKDQVAILGDKMKRSTSCSIQELANVMSGGKCREAQSTLKNEETELESD

Homology

[Close]

BLAST of MELO3C017893 vs. NCBI nr
Match: XP_016901550.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g52640, mitochondrial [Cucumis melo] >KAA0044434.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK29561.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 145.6 bits (366), Expect = 1.7e-31
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1   MMIDEGIPPYIATVELLRDRLLGIGFKDQVAILGDKMKRSTSCSIQELANVMSGGKCREA 60
           MMIDEGIPPYIATVELLRDRLLGIGFKDQVAILGDKMKRSTSCSIQELANVMSGGKCREA
Sbjct: 456 MMIDEGIPPYIATVELLRDRLLGIGFKDQVAILGDKMKRSTSCSIQELANVMSGGKCREA 515

Query: 61  QSTLKNEETELESD 75
           QSTLKNEETELESD
Sbjct: 516 QSTLKNEETELESD 529

[Close]

BLAST of MELO3C017893 vs. NCBI nr
Match: XP_004152353.1 (pentatricopeptide repeat-containing protein At1g52640, mitochondrial [Cucumis sativus] >KGN52881.1 hypothetical protein Csa_015221 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 3.0e-28
Identity = 70/74 (94.59%), Postives = 71/74 (95.95%), Query Frame = 0


Query: 1   MMIDEGIPPYIATVELLRDRLLGIGFKDQVAILGDKMKRSTSCSIQELANVMSGGKCREA 60
           MMIDEGIPPYIATVELLRDRLLGIGFKDQVAILGDKMKRSTSCSIQELAN+MSGGK REA
Sbjct: 456 MMIDEGIPPYIATVELLRDRLLGIGFKDQVAILGDKMKRSTSCSIQELANLMSGGKRREA 515

Query: 61  QSTLKNEETELESD 75
           QS LKNEETE ESD
Sbjct: 516 QSMLKNEETEHESD 529

[Close]

BLAST of MELO3C017893 vs. NCBI nr
Match: XP_022153570.1 (pentatricopeptide repeat-containing protein At1g52640, mitochondrial [Momordica charantia])

HSP 1 Score: 124.4 bits (311), Expect = 4.1e-25
Identity = 62/74 (83.78%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 1   MMIDEGIPPYIATVELLRDRLLGIGFKDQVAILGDKMKRSTSCSIQELANVMSGGKCREA 60
           MMIDEGIPPYI+TVELLR+RLLGIGFKD + ILG KM+RSTSCSIQELANVMSGGKC   
Sbjct: 457 MMIDEGIPPYISTVELLRNRLLGIGFKDHIEILGQKMRRSTSCSIQELANVMSGGKCHGV 516

Query: 61  QSTLKNEETELESD 75
            ST KNEETELESD
Sbjct: 517 HSTSKNEETELESD 530

[Close]

BLAST of MELO3C017893 vs. NCBI nr
Match: XP_038894916.1 (pentatricopeptide repeat-containing protein At1g52640, mitochondrial [Benincasa hispida])

HSP 1 Score: 121.7 bits (304), Expect = 2.6e-24
Identity = 60/74 (81.08%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 1   MMIDEGIPPYIATVELLRDRLLGIGFKDQVAILGDKMKRSTSCSIQELANVMSGGKCREA 60
           MMIDEGIPPYI+TVELLR+RLLGIGFKD V ILGDKM+RSTSCSIQELANVMSGGKC E 
Sbjct: 456 MMIDEGIPPYISTVELLRNRLLGIGFKDHVEILGDKMRRSTSCSIQELANVMSGGKCHEV 515

Query: 61  QSTLKNEETELESD 75
               +NE+TE ESD
Sbjct: 516 HRMSRNEDTEFESD 529

[Close]

BLAST of MELO3C017893 vs. NCBI nr
Match: XP_022980164.1 (pentatricopeptide repeat-containing protein At1g52640, mitochondrial [Cucurbita maxima] >XP_022980165.1 pentatricopeptide repeat-containing protein At1g52640, mitochondrial [Cucurbita maxima])

HSP 1 Score: 120.9 bits (302), Expect = 4.5e-24
Identity = 62/75 (82.67%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 1   MMIDEGIPPYIATVELLRDRLLGIGFKDQVAILGDKMKRSTSCSIQELANVMSGGKCREA 60
           MMIDEGIPPYIATVELL++RLLGIGFKDQV ILGDKM+RS+SCSIQELANVMSGGKC E 
Sbjct: 456 MMIDEGIPPYIATVELLKNRLLGIGFKDQVEILGDKMRRSSSCSIQELANVMSGGKCHEV 515

Query: 61  QS-TLKNEETELESD 75
            + + K+EETELESD
Sbjct: 516 HTMSSKSEETELESD 530

[Close]

BLAST of MELO3C017893 vs. ExPASy Swiss-Prot
Match: Q9SSR6 (Pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g52640 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.6e-11
Identity = 39/78 (50.00%), Postives = 53/78 (67.95%), Query Frame = 0


Query: 1   MMIDEGIPPYIATVELLRDRLLGIGFKDQVAILGDKMKRSTSCSIQELANVMSGGKCREA 60
           MMIDEGIPPY  TVE+LR+RL+G G  D V +L  KM+RS+SCS+Q++A  M G + R  
Sbjct: 444 MMIDEGIPPYSTTVEMLRNRLVGWGQMDVVDVLAGKMERSSSCSVQDMAVEMRGKRRRLG 503

Query: 61  QSTLKNEET----ELESD 75
           + +  +E+     ELE D
Sbjct: 504 RRSENSEDDDDDFELERD 521

[Close]

BLAST of MELO3C017893 vs. ExPASy TrEMBL
Match: A0A5D3E1T3 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001670 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 8.3e-32
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1   MMIDEGIPPYIATVELLRDRLLGIGFKDQVAILGDKMKRSTSCSIQELANVMSGGKCREA 60
           MMIDEGIPPYIATVELLRDRLLGIGFKDQVAILGDKMKRSTSCSIQELANVMSGGKCREA
Sbjct: 456 MMIDEGIPPYIATVELLRDRLLGIGFKDQVAILGDKMKRSTSCSIQELANVMSGGKCREA 515

Query: 61  QSTLKNEETELESD 75
           QSTLKNEETELESD
Sbjct: 516 QSTLKNEETELESD 529

[Close]

BLAST of MELO3C017893 vs. ExPASy TrEMBL
Match: A0A1S4E0Q1 (pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Cucumis melo OX=3656 GN=LOC107990307 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 8.3e-32
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1   MMIDEGIPPYIATVELLRDRLLGIGFKDQVAILGDKMKRSTSCSIQELANVMSGGKCREA 60
           MMIDEGIPPYIATVELLRDRLLGIGFKDQVAILGDKMKRSTSCSIQELANVMSGGKCREA
Sbjct: 456 MMIDEGIPPYIATVELLRDRLLGIGFKDQVAILGDKMKRSTSCSIQELANVMSGGKCREA 515

Query: 61  QSTLKNEETELESD 75
           QSTLKNEETELESD
Sbjct: 516 QSTLKNEETELESD 529

[Close]

BLAST of MELO3C017893 vs. ExPASy TrEMBL
Match: A0A0A0KYE8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G004910 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.5e-28
Identity = 70/74 (94.59%), Postives = 71/74 (95.95%), Query Frame = 0


Query: 1   MMIDEGIPPYIATVELLRDRLLGIGFKDQVAILGDKMKRSTSCSIQELANVMSGGKCREA 60
           MMIDEGIPPYIATVELLRDRLLGIGFKDQVAILGDKMKRSTSCSIQELAN+MSGGK REA
Sbjct: 456 MMIDEGIPPYIATVELLRDRLLGIGFKDQVAILGDKMKRSTSCSIQELANLMSGGKRREA 515

Query: 61  QSTLKNEETELESD 75
           QS LKNEETE ESD
Sbjct: 516 QSMLKNEETEHESD 529

[Close]

BLAST of MELO3C017893 vs. ExPASy TrEMBL
Match: A0A6J1DH63 (pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111021041 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.0e-25
Identity = 62/74 (83.78%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 1   MMIDEGIPPYIATVELLRDRLLGIGFKDQVAILGDKMKRSTSCSIQELANVMSGGKCREA 60
           MMIDEGIPPYI+TVELLR+RLLGIGFKD + ILG KM+RSTSCSIQELANVMSGGKC   
Sbjct: 457 MMIDEGIPPYISTVELLRNRLLGIGFKDHIEILGQKMRRSTSCSIQELANVMSGGKCHGV 516

Query: 61  QSTLKNEETELESD 75
            ST KNEETELESD
Sbjct: 517 HSTSKNEETELESD 530

[Close]

BLAST of MELO3C017893 vs. ExPASy TrEMBL
Match: A0A6J1IYJ0 (pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111479635 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.2e-24
Identity = 62/75 (82.67%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 1   MMIDEGIPPYIATVELLRDRLLGIGFKDQVAILGDKMKRSTSCSIQELANVMSGGKCREA 60
           MMIDEGIPPYIATVELL++RLLGIGFKDQV ILGDKM+RS+SCSIQELANVMSGGKC E 
Sbjct: 456 MMIDEGIPPYIATVELLKNRLLGIGFKDQVEILGDKMRRSSSCSIQELANVMSGGKCHEV 515

Query: 61  QS-TLKNEETELESD 75
            + + K+EETELESD
Sbjct: 516 HTMSSKSEETELESD 530

[Close]

BLAST of MELO3C017893 vs. TAIR 10
Match: AT1G52640.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 69.7 bits (169), Expect = 1.1e-12
Identity = 39/78 (50.00%), Postives = 53/78 (67.95%), Query Frame = 0


Query: 1   MMIDEGIPPYIATVELLRDRLLGIGFKDQVAILGDKMKRSTSCSIQELANVMSGGKCREA 60
           MMIDEGIPPY  TVE+LR+RL+G G  D V +L  KM+RS+SCS+Q++A  M G + R  
Sbjct: 444 MMIDEGIPPYSTTVEMLRNRLVGWGQMDVVDVLAGKMERSSSCSVQDMAVEMRGKRRRLG 503

Query: 61  QSTLKNEET----ELESD 75
           + +  +E+     ELE D
Sbjct: 504 RRSENSEDDDDDFELERD 521

The following BLAST results are available for this feature:

BLAST of MELO3C017893 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016901550.1	1.7e-31	100.00	PREDICTED: pentatricopeptide repeat-containing protein At1g52640, mitochondrial ...	[more]
XP_004152353.1	3.0e-28	94.59	pentatricopeptide repeat-containing protein At1g52640, mitochondrial [Cucumis sa...	[more]
XP_022153570.1	4.1e-25	83.78	pentatricopeptide repeat-containing protein At1g52640, mitochondrial [Momordica ...	[more]
XP_038894916.1	2.6e-24	81.08	pentatricopeptide repeat-containing protein At1g52640, mitochondrial [Benincasa ...	[more]
XP_022980164.1	4.5e-24	82.67	pentatricopeptide repeat-containing protein At1g52640, mitochondrial [Cucurbita ...	[more]

BLAST of MELO3C017893 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SSR6	1.6e-11	50.00	Pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Arabidop...	[more]

BLAST of MELO3C017893 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E1T3	8.3e-32	100.00	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S4E0Q1	8.3e-32	100.00	pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Cucumis ...	[more]
A0A0A0KYE8	1.5e-28	94.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G004910 PE=4 SV=1	[more]
A0A6J1DH63	2.0e-25	83.78	pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Momordic...	[more]
A0A6J1IYJ0	2.2e-24	82.67	pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Cucurbit...	[more]

BLAST of MELO3C017893 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52640.1	1.1e-12	50.00	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47938:SF13	TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN	coord: 1..71
None	No IPR available	PANTHER	PTHR47938	RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED	coord: 1..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C017893.1	MELO3C017893.1	mRNA