MELO3C017626.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C017626.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Mediator of RNA polymerase II transcription subunit 31
Location	chr07: 24384304 .. 24387444 (+)
RNA-Seq Expression	MELO3C017626.jh1
Synteny	MELO3C017626.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGGTTTTGATAGCATTGTTAGCGCGGGCTTATTTCATTGTTCTACGTCGGGTCATCGATTTCTATCGCTTGCTGCTCTAAGTTGAATGTAGCCTTTGTTGAGAGCTTTGAAGAATATCTCCATATCGCTCCACTACGAATCTCGTAACTTCTTCTTAATTTTTGGGTTCGATTTGAACTTCTATTGCGCGATATTTGAACTTCGACTGGCACCCAGATTCAATGGCGTCCAATCATGGATTAAACGAAGAAGCAGCTGATAACCCATCATCGTAAGTTTGTTTCTTATTTTCATTCTCCTGTTCTATCATTTTCCCTCCTTCTTCGTCTCCCTTTACCCAACTCTTCTTTCATTTTGTATATCGCTTTAATTCTTCATTTTTGCTCTGTTGCTGAGGGATTGATTTATCGGGCTCATCGTGAATCGATCAATTTTCCCTTTCTGTTTGGTCAATTATTACCAGGCCTACAAATGTTTACAAAGATCCCGATGACGGACGGCAGCGGTTCTTGCTTGAATTGGAGTTTGTTCAATGCCTTGCCAATCCTACCTACATTCATTGTAAGTTTTTGTAAAATTTAGGGTTTCTTTATAGGGGTTAGGCTTATTTCTTATGCTTGAAACTTCAGCTTGAAGGGTAGGCCAAGCTATTGGATGTTCGAAGTTTCGAAAATTCAGCGTTTATCCTAAGATTTGCTTTCGGACCATTTCAGTTGAATTTATATTCAATTTGGATTTCTAATGAGCTAACTATACATGAAAGTGTGCTTTACATGAAAAGCAACCAATACGAAAGTAAATTCTACGTATTTCTTCTAATGATAAAGTGGATTGAACTTATGTGTATAATAAATGTCATTGTAAAATTAAATAATCACTTTGGAGTGAGTTCAAGCTAGGACGAACGTTTACCAATGATTTAATACCGTATGAGTTTTCTTGATATCAATATCAATATAGTATTGTTATAGTTGTTCCATTCAATTAGTTGAGGTCTAACAAGCTAGCTTGAACATCCAGGGTGTGAAAGAAAAAGAACTGGTTGCTTGAATTTTTATCATATAATATCTCACGTGAACCATGTGTTTTATTTGAATTTTGAACATGATTTTCTCGGTTGCATTTTCCTGTGAAGGTGTGATTTTTTATTGACCAGTGTGAAGAAGGAAGTCACAATTAAAGATCAGATTTTGACATCTAGAACCAAAGTTCATTCTATTGCATGACATCTTCTTGAGTTAGAGTAGTGCCTAGATGAAACTTTTTCTTTTATGTTAACCGCCTGACTACTGCTGGTGCAGCGACCTACTGTTCCTACTACAAAATCAACTTATAAGTTACCAGAGATCAGTGCTCGTCTGATCTTTTTCTGCCTGTTAAGAAAAGCTGGCGTTGTACAATTCTTACATATAGTGAATTTCCTAGAATTTTATCCTTTTGATGATATGCTACATTATCTTACTGAAGTACATTTCCGAAGTTGGCACTTACATTTTTTATGATAGTCATCTTCACCTTCACGTACACATTTCTTCTTAACAAACGATGTATTTGCAAATTGATATTGAAATGTTGGAACAAATGCTTTTTGTGCTCTCAGTTTTGGTTGCTGATCATCTAGTTTTATACAGATCTGGCACAGAATCGTTACCTCGAGGATGAAGCTTTTATTGGTTACTTGAAGTACCTTCAATATTGGCAACGGCCAGAGTATATCAAGTTTATAATGTGAGTCGGTTCTTTCCCTGAACTGATGAATGAGAACTGATTGTTCTTTTGGTATTGACTTCAATGTTGTTTCTAGGTACCCCCATTGTCTTTTTTTTCTTGAACTTCTACAAAATTCAAACTTCCGAAATGCAATGGCTCATCCTGGCAACAAGGTTAGCTTCTGTTCTTTTTTGTTCAACTTCTCTTTCGAGATCGGAGAATAAATATTTAGTTGGATAGTGATTTTTTTCTGTGCTCGCGACTATGCACATCTCTGATAAATGCCCAGTAGACTCGTATGTTCGTTTCAGTTTATACTGAGATGAGAAAAATCTAAACTGTCTCTCATGTCCATCGATTCAAGAGAGATATCTGTTGCTTCTTTCCAAATGGTTTGCTCATATGCAGATAGCGATATTTCCCCTTTTTCTTTTTCTTAGTATTTTAACGCAGTTGCATCATTTGGAATTTCTTAGGAATTGGCACACAGACAACAATTTTACTTCTGGAAGAACTATAGGAATAATCGATTGAAACACATTTTGCCTCGACCTCTTCCCGAACCTGCAGCATTACCACCCCCAGTATCCGCCCCACCTCAAGCACCTGTACCGGCCCCAACCCCAGCCCCCACTGTGGCAGCTTCACCTGCTACAGCTGCACTTTCTCCCATGCAGTATGGTATTCCACCTGGTCCTGGACTTCCAAAGAACGACATGAAGGGCGCAGGAATTGATCGACGAAAGAGAAAACATGTAACGTGTCACATATCATTTGTTTTCTCAAGTTATCGATGTACTCTACTTATTAGGTTAGAAGACACACCTCTTCCTTAAACCTTCAAATTTTCATTTACTTCTTTTGTGTGTTTGACAGGAAAGAAGTATGACGTAGTTGGTTTCATTAGTCAAAACTAGGGTGGATGCTGGAGCAGCTCATGAGGTAAATATGCATACAGTGAAAATTAAAGTTCAAAGATGATGCCTTGCATAAGCTTTCCAAGAGTTATCCTTCACTTCGGGTTGTGCAAAATCTCTCTCTCGCATGTTCGCGAACAGAGCGACATGACCTCCACGTTCGTATAAAGTATTGCTAAGAATTCTTAAAATTTTTGGTTTATCTATATGTTTGGCTGTTATGGCTATCTATACATTGGTAAGCAGTTCCTTTGACTATCCTTTTATCTCCATCTATATTAGACAATTTTTTGTAGCAGCGTAAAATCCTATGAGTAGGCATGGTGAGAAGTGAGCAGTAATGTGGATATAGCCAGATATATCGTTTATAAATAGCGACATTTTGTTATATTTGTAAATATTTTTGCAATTTGTTATTTAAATTTTTTTTTTTTATGTTTTATTGATTATGATATGTAAGAATATGTATTAATAGTTCAAGTTTATGTCAATGTTGACGAAAATATAGAGATC

mRNA sequence

GAGGTTTTGATAGCATTGTTAGCGCGGGCTTATTTCATTGTTCTACGTCGGGTCATCGATTTCTATCGCTTGCTGCTCTAAGTTGAATGTAGCCTTTGTTGAGAGCTTTGAAGAATATCTCCATATCGCTCCACTACGAATCTCGTAACTTCTTCTTAATTTTTGGGTTCGATTTGAACTTCTATTGCGCGATATTTGAACTTCGACTGGCACCCAGATTCAATGGCGTCCAATCATGGATTAAACGAAGAAGCAGCTGATAACCCATCATCGCCTACAAATGTTTACAAAGATCCCGATGACGGACGGCAGCGGTTCTTGCTTGAATTGGAGTTTGTTCAATGCCTTGCCAATCCTACCTACATTCATTATCTGGCACAGAATCGTTACCTCGAGGATGAAGCTTTTATTGGTTACTTGAAGTACCTTCAATATTGGCAACGGCCAGAGTATATCAAGTTTATAATGTACCCCCATTGTCTTTTTTTTCTTGAACTTCTACAAAATTCAAACTTCCGAAATGCAATGGCTCATCCTGGCAACAAGGAATTGGCACACAGACAACAATTTTACTTCTGGAAGAACTATAGGAATAATCGATTGAAACACATTTTGCCTCGACCTCTTCCCGAACCTGCAGCATTACCACCCCCAGTATCCGCCCCACCTCAAGCACCTGTACCGGCCCCAACCCCAGCCCCCACTGTGGCAGCTTCACCTGCTACAGCTGCACTTTCTCCCATGCAGTATGGTATTCCACCTGGTCCTGGACTTCCAAAGAACGACATGAAGGGCGCAGGAATTGATCGACGAAAGAGAAAACATGAAAGAAGTATGACGTAGTTGGTTTCATTAGTCAAAACTAGGGTGGATGCTGGAGCAGCTCATGAGGTAAATATGCATACAGTGAAAATTAAAGTTCAAAGATGATGCCTTGCATAAGCTTTCCAAGAGTTATCCTTCACTTCGGGTTGTGCAAAATCTCTCTCTCGCATGTTCGCGAACAGAGCGACATGACCTCCACGTTCGTATAAAGTATTGCTAAGAATTCTTAAAATTTTTGGTTTATCTATATGTTTGGCTGTTATGGCTATCTATACATTGGTAAGCAGTTCCTTTGACTATCCTTTTATCTCCATCTATATTAGACAATTTTTTGTAGCAGCGTAAAATCCTATGAGTAGGCATGGTGAGAAGTGAGCAGTAATGTGGATATAGCCAGATATATCGTTTATAAATAGCGACATTTTGTTATATTTGTAAATATTTTTGCAATTTGTTATTTAAATTTTTTTTTTTTATGTTTTATTGATTATGATATGTAAGAATATGTATTAATAGTTCAAGTTTATGTCAATGTTGACGAAAATATAGAGATC

Coding sequence (CDS)

ATGGCGTCCAATCATGGATTAAACGAAGAAGCAGCTGATAACCCATCATCGCCTACAAATGTTTACAAAGATCCCGATGACGGACGGCAGCGGTTCTTGCTTGAATTGGAGTTTGTTCAATGCCTTGCCAATCCTACCTACATTCATTATCTGGCACAGAATCGTTACCTCGAGGATGAAGCTTTTATTGGTTACTTGAAGTACCTTCAATATTGGCAACGGCCAGAGTATATCAAGTTTATAATGTACCCCCATTGTCTTTTTTTTCTTGAACTTCTACAAAATTCAAACTTCCGAAATGCAATGGCTCATCCTGGCAACAAGGAATTGGCACACAGACAACAATTTTACTTCTGGAAGAACTATAGGAATAATCGATTGAAACACATTTTGCCTCGACCTCTTCCCGAACCTGCAGCATTACCACCCCCAGTATCCGCCCCACCTCAAGCACCTGTACCGGCCCCAACCCCAGCCCCCACTGTGGCAGCTTCACCTGCTACAGCTGCACTTTCTCCCATGCAGTATGGTATTCCACCTGGTCCTGGACTTCCAAAGAACGACATGAAGGGCGCAGGAATTGATCGACGAAAGAGAAAACATGAAAGAAGTATGACGTAG

Protein sequence

MASNHGLNEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWKNYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPTPAPTVAASPATAALSPMQYGIPPGPGLPKNDMKGAGIDRRKRKHERSMT

Homology

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BLAST of MELO3C017626.jh1 vs. NCBI nr
Match: XP_008453845.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 31 [Cucumis melo] >KAA0044690.1 mediator of RNA polymerase II transcription subunit 31 [Cucumis melo var. makuwa] >TYK16894.1 mediator of RNA polymerase II transcription subunit 31 [Cucumis melo var. makuwa])

HSP 1 Score: 414 bits (1064), Expect = 6.63e-146
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 1   MASNHGLNEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60
           MASNHGLNEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE
Sbjct: 1   MASNHGLNEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60

Query: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK 120
           AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK 120

Query: 121 NYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPTPAPTVAASPATAALSPMQYGIPP 180
           NYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPTPAPTVAASPATAALSPMQYGIPP
Sbjct: 121 NYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPTPAPTVAASPATAALSPMQYGIPP 180

Query: 181 GPGLPKNDMKGAGIDRRKRKHERSMT 206
           GPGLPKNDMKGAGIDRRKRKHERSMT
Sbjct: 181 GPGLPKNDMKGAGIDRRKRKHERSMT 206

[Close]

BLAST of MELO3C017626.jh1 vs. NCBI nr
Match: XP_004146891.1 (mediator of RNA polymerase II transcription subunit 31 [Cucumis sativus] >KGN53186.1 hypothetical protein Csa_014598 [Cucumis sativus])

HSP 1 Score: 394 bits (1012), Expect = 5.63e-138
Identity = 196/206 (95.15%), Postives = 199/206 (96.60%), Query Frame = 0


Query: 1   MASNHGLNEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60
           MASNHGL EE ADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE
Sbjct: 1   MASNHGLKEEEADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60

Query: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK 120
           AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK 120

Query: 121 NYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPTPAPTVAASPATAALSPMQYGIPP 180
           NYRNNRLKHILPRPLPEPAALPPPV+APPQA VPAPT AP +AASPA  ALSP+QYGIPP
Sbjct: 121 NYRNNRLKHILPRPLPEPAALPPPVTAPPQAAVPAPTSAPNMAASPAAPALSPIQYGIPP 180

Query: 181 GPGLPKNDMKGAGIDRRKRKHERSMT 206
           GPGLPKNDMKGAGIDRRKRKHERSMT
Sbjct: 181 GPGLPKNDMKGAGIDRRKRKHERSMT 206

[Close]

BLAST of MELO3C017626.jh1 vs. NCBI nr
Match: XP_038880162.1 (mediator of RNA polymerase II transcription subunit 31 [Benincasa hispida])

HSP 1 Score: 380 bits (976), Expect = 1.67e-132
Identity = 195/206 (94.66%), Postives = 197/206 (95.63%), Query Frame = 0


Query: 1   MASNHGLNEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60
           MASN GLNEEAA NPSSPT+VYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE
Sbjct: 1   MASNPGLNEEAAGNPSSPTSVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60

Query: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK 120
           AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK 120

Query: 121 NYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPTPAPTVAASPA-TAALSPMQYGIP 180
           NYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAP PA  +AASPA T ALSPMQYGIP
Sbjct: 121 NYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPAPA--MAASPAGTPALSPMQYGIP 180

Query: 181 PGPGLPKNDMKGAGIDRRKRKHERSM 205
           PG GLPKNDMK AGIDRRKRKHERSM
Sbjct: 181 PGSGLPKNDMKSAGIDRRKRKHERSM 204

[Close]

BLAST of MELO3C017626.jh1 vs. NCBI nr
Match: XP_022141008.1 (mediator of RNA polymerase II transcription subunit 31 [Momordica charantia])

HSP 1 Score: 364 bits (935), Expect = 3.19e-126
Identity = 189/208 (90.87%), Postives = 193/208 (92.79%), Query Frame = 0


Query: 1   MASNHGLNEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60
           MASNHGLNEEA+DNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRY EDE
Sbjct: 1   MASNHGLNEEASDNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDE 60

Query: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK 120
           AFIGYLKYLQYWQRPEYIKFIMYPH LFFLELLQN+NFRNAMAHP NKEL+HRQQFYFWK
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHSLFFLELLQNANFRNAMAHPANKELSHRQQFYFWK 120

Query: 121 NYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPTPAPTVAASPATA-ALSPMQYGIP 180
           NYRNNRLKHILPRPLPEPAALPPPVS PPQAPVPA T AP +AASP  A ALSPMQYGIP
Sbjct: 121 NYRNNRLKHILPRPLPEPAALPPPVSVPPQAPVPAAT-APGMAASPVGAPALSPMQYGIP 180

Query: 181 PGPGLPKNDMKGAGIDRRKRK-HERSMT 206
           PG GL KNDMK  GIDRRKRK HERSMT
Sbjct: 181 PGSGLAKNDMKSGGIDRRKRKQHERSMT 207

[Close]

BLAST of MELO3C017626.jh1 vs. NCBI nr
Match: XP_022984406.1 (mediator of RNA polymerase II transcription subunit 31-like [Cucurbita maxima])

HSP 1 Score: 362 bits (928), Expect = 3.35e-125
Identity = 182/205 (88.78%), Postives = 188/205 (91.71%), Query Frame = 0


Query: 1   MASNHGLNEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60
           MASNH LNEEA DNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE
Sbjct: 1   MASNHELNEEADDNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60

Query: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK 120
           AFIGYLKYLQYWQ+PEYIK+IMYPHCLFFLELLQN+NFRNAMAHP NKEL HRQQFYFWK
Sbjct: 61  AFIGYLKYLQYWQQPEYIKYIMYPHCLFFLELLQNANFRNAMAHPANKELTHRQQFYFWK 120

Query: 121 NYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPTPAPTVAASPATAALSPMQYGIPP 180
           NYRNNRLKHILPRPLPEPAA PP VS PPQAPV AP PA  +AASPA   LSPMQYG+PP
Sbjct: 121 NYRNNRLKHILPRPLPEPAAQPPAVSGPPQAPVSAPAPA--MAASPAGTPLSPMQYGVPP 180

Query: 181 GPGLPKNDMKGAGIDRRKRKHERSM 205
           G G+ KNDMK AGIDRRKRKHERSM
Sbjct: 181 GSGISKNDMKNAGIDRRKRKHERSM 203

[Close]

BLAST of MELO3C017626.jh1 vs. ExPASy Swiss-Prot
Match: Q8VYB1 (Mediator of RNA polymerase II transcription subunit 31 OS=Arabidopsis thaliana OX=3702 GN=MED31 PE=1 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 8.9e-73
Identity = 148/203 (72.91%), Postives = 159/203 (78.33%), Query Frame = 0


Query: 1   MASNHGLNEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60
           MAS   + ++A++ PS P N YKDPD GRQRFLLELEF+QCLANPTYIHYLAQNRY EDE
Sbjct: 1   MASPEEMGDDASEIPSPPKNTYKDPDGGRQRFLLELEFIQCLANPTYIHYLAQNRYFEDE 60

Query: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK 120
           AFIGYLKYLQYWQRPEYIKFIMYPHCL+FLELLQN NFR AMAHP NKELAHRQQFY+WK
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNPNFRTAMAHPANKELAHRQQFYYWK 120

Query: 121 NYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPTPAPTVAASPATAALSPMQYGIPP 180
           NYRNNRLKHILPRPLPEP    PPV+  P   +P P P+ T A SP   ALSPMQY    
Sbjct: 121 NYRNNRLKHILPRPLPEPVPPQPPVA--PSTSLP-PAPSATAALSP---ALSPMQY---- 180

Query: 181 GPGLPKND---MKGAGIDRRKRK 201
              L KND   M   GIDRRKRK
Sbjct: 181 NNMLSKNDTRNMGATGIDRRKRK 193

[Close]

BLAST of MELO3C017626.jh1 vs. ExPASy Swiss-Prot
Match: Q54NI7 (Putative mediator of RNA polymerase II transcription subunit 31 OS=Dictyostelium discoideum OX=44689 GN=med31 PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.3e-31
Identity = 57/97 (58.76%), Postives = 76/97 (78.35%), Query Frame = 0


Query: 31  RFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLFFL 90
           RF++ELEF+QCL+NP Y++YLAQNRY +D+AF+ YL YLQYW++PEY KFI+YP  L+FL
Sbjct: 55  RFIMELEFIQCLSNPRYLNYLAQNRYFQDKAFVNYLVYLQYWKKPEYAKFIVYPQSLYFL 114

Query: 91  ELLQNSNFRNAMAHPGNKELAHRQQFYFWKNYRNNRL 128
           +LLQ   FR  + H  + +  H QQFY W+ YRNNR+
Sbjct: 115 DLLQEERFRQELNHSQSTDFIHEQQFYHWQYYRNNRM 151

[Close]

BLAST of MELO3C017626.jh1 vs. ExPASy Swiss-Prot
Match: A0JNN3 (Mediator of RNA polymerase II transcription subunit 31 OS=Bos taurus OX=9913 GN=MED31 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.4e-24
Identity = 51/105 (48.57%), Postives = 68/105 (64.76%), Query Frame = 0


Query: 24  DPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLKYLQYWQRPEYIKFIMY 83
           D    R RF LELEFVQCLANP Y+++LAQ  Y +D+AF+ YLKYL YW+ PEY K++ Y
Sbjct: 10  DDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKEPEYAKYLKY 69

Query: 84  PHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWKNYRNNRLK 129
           P CL  LELLQ  +FR  + +    +    QQ   W++Y   R++
Sbjct: 70  PQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRMR 114

[Close]

BLAST of MELO3C017626.jh1 vs. ExPASy Swiss-Prot
Match: Q9CXU1 (Mediator of RNA polymerase II transcription subunit 31 OS=Mus musculus OX=10090 GN=Med31 PE=1 SV=2)

HSP 1 Score: 112.8 bits (281), Expect = 4.5e-24
Identity = 51/105 (48.57%), Postives = 68/105 (64.76%), Query Frame = 0


Query: 24  DPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLKYLQYWQRPEYIKFIMY 83
           D    R RF LELEFVQCLANP Y+++LAQ  Y +D+AF+ YLKYL YW+ PEY K++ Y
Sbjct: 10  DDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKEPEYAKYLKY 69

Query: 84  PHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWKNYRNNRLK 129
           P CL  LELLQ  +FR  + +    +    QQ   W++Y   R++
Sbjct: 70  PQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRVR 114

[Close]

BLAST of MELO3C017626.jh1 vs. ExPASy Swiss-Prot
Match: Q9Y3C7 (Mediator of RNA polymerase II transcription subunit 31 OS=Homo sapiens OX=9606 GN=MED31 PE=1 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.9e-24
Identity = 51/105 (48.57%), Postives = 68/105 (64.76%), Query Frame = 0


Query: 24  DPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLKYLQYWQRPEYIKFIMY 83
           D    R RF LELEFVQCLANP Y+++LAQ  Y +D+AF+ YLKYL YW+ PEY K++ Y
Sbjct: 10  DDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKDPEYAKYLKY 69

Query: 84  PHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWKNYRNNRLK 129
           P CL  LELLQ  +FR  + +    +    QQ   W++Y   R++
Sbjct: 70  PQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRMR 114

[Close]

BLAST of MELO3C017626.jh1 vs. ExPASy TrEMBL
Match: A0A5D3D0Y1 (Mediator of RNA polymerase II transcription subunit 31 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00280 PE=3 SV=1)

HSP 1 Score: 414 bits (1064), Expect = 3.21e-146
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 1   MASNHGLNEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60
           MASNHGLNEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE
Sbjct: 1   MASNHGLNEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60

Query: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK 120
           AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK 120

Query: 121 NYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPTPAPTVAASPATAALSPMQYGIPP 180
           NYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPTPAPTVAASPATAALSPMQYGIPP
Sbjct: 121 NYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPTPAPTVAASPATAALSPMQYGIPP 180

Query: 181 GPGLPKNDMKGAGIDRRKRKHERSMT 206
           GPGLPKNDMKGAGIDRRKRKHERSMT
Sbjct: 181 GPGLPKNDMKGAGIDRRKRKHERSMT 206

[Close]

BLAST of MELO3C017626.jh1 vs. ExPASy TrEMBL
Match: A0A1S3BY12 (Mediator of RNA polymerase II transcription subunit 31 OS=Cucumis melo OX=3656 GN=LOC103494449 PE=3 SV=1)

HSP 1 Score: 414 bits (1064), Expect = 3.21e-146
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 1   MASNHGLNEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60
           MASNHGLNEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE
Sbjct: 1   MASNHGLNEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60

Query: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK 120
           AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK 120

Query: 121 NYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPTPAPTVAASPATAALSPMQYGIPP 180
           NYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPTPAPTVAASPATAALSPMQYGIPP
Sbjct: 121 NYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPTPAPTVAASPATAALSPMQYGIPP 180

Query: 181 GPGLPKNDMKGAGIDRRKRKHERSMT 206
           GPGLPKNDMKGAGIDRRKRKHERSMT
Sbjct: 181 GPGLPKNDMKGAGIDRRKRKHERSMT 206

[Close]

BLAST of MELO3C017626.jh1 vs. ExPASy TrEMBL
Match: A0A0A0KZ88 (Mediator of RNA polymerase II transcription subunit 31 OS=Cucumis sativus OX=3659 GN=Csa_4G025160 PE=3 SV=1)

HSP 1 Score: 394 bits (1012), Expect = 2.73e-138
Identity = 196/206 (95.15%), Postives = 199/206 (96.60%), Query Frame = 0


Query: 1   MASNHGLNEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60
           MASNHGL EE ADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE
Sbjct: 1   MASNHGLKEEEADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60

Query: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK 120
           AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK 120

Query: 121 NYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPTPAPTVAASPATAALSPMQYGIPP 180
           NYRNNRLKHILPRPLPEPAALPPPV+APPQA VPAPT AP +AASPA  ALSP+QYGIPP
Sbjct: 121 NYRNNRLKHILPRPLPEPAALPPPVTAPPQAAVPAPTSAPNMAASPAAPALSPIQYGIPP 180

Query: 181 GPGLPKNDMKGAGIDRRKRKHERSMT 206
           GPGLPKNDMKGAGIDRRKRKHERSMT
Sbjct: 181 GPGLPKNDMKGAGIDRRKRKHERSMT 206

[Close]

BLAST of MELO3C017626.jh1 vs. ExPASy TrEMBL
Match: A0A6J1CJB2 (Mediator of RNA polymerase II transcription subunit 31 OS=Momordica charantia OX=3673 GN=LOC111011520 PE=3 SV=1)

HSP 1 Score: 364 bits (935), Expect = 1.54e-126
Identity = 189/208 (90.87%), Postives = 193/208 (92.79%), Query Frame = 0


Query: 1   MASNHGLNEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60
           MASNHGLNEEA+DNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRY EDE
Sbjct: 1   MASNHGLNEEASDNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDE 60

Query: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK 120
           AFIGYLKYLQYWQRPEYIKFIMYPH LFFLELLQN+NFRNAMAHP NKEL+HRQQFYFWK
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHSLFFLELLQNANFRNAMAHPANKELSHRQQFYFWK 120

Query: 121 NYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPTPAPTVAASPATA-ALSPMQYGIP 180
           NYRNNRLKHILPRPLPEPAALPPPVS PPQAPVPA T AP +AASP  A ALSPMQYGIP
Sbjct: 121 NYRNNRLKHILPRPLPEPAALPPPVSVPPQAPVPAAT-APGMAASPVGAPALSPMQYGIP 180

Query: 181 PGPGLPKNDMKGAGIDRRKRK-HERSMT 206
           PG GL KNDMK  GIDRRKRK HERSMT
Sbjct: 181 PGSGLAKNDMKSGGIDRRKRKQHERSMT 207

[Close]

BLAST of MELO3C017626.jh1 vs. ExPASy TrEMBL
Match: A0A6J1J551 (Mediator of RNA polymerase II transcription subunit 31 OS=Cucurbita maxima OX=3661 GN=LOC111482713 PE=3 SV=1)

HSP 1 Score: 362 bits (928), Expect = 1.62e-125
Identity = 182/205 (88.78%), Postives = 188/205 (91.71%), Query Frame = 0


Query: 1   MASNHGLNEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60
           MASNH LNEEA DNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE
Sbjct: 1   MASNHELNEEADDNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60

Query: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK 120
           AFIGYLKYLQYWQ+PEYIK+IMYPHCLFFLELLQN+NFRNAMAHP NKEL HRQQFYFWK
Sbjct: 61  AFIGYLKYLQYWQQPEYIKYIMYPHCLFFLELLQNANFRNAMAHPANKELTHRQQFYFWK 120

Query: 121 NYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPTPAPTVAASPATAALSPMQYGIPP 180
           NYRNNRLKHILPRPLPEPAA PP VS PPQAPV AP PA  +AASPA   LSPMQYG+PP
Sbjct: 121 NYRNNRLKHILPRPLPEPAAQPPAVSGPPQAPVSAPAPA--MAASPAGTPLSPMQYGVPP 180

Query: 181 GPGLPKNDMKGAGIDRRKRKHERSM 205
           G G+ KNDMK AGIDRRKRKHERSM
Sbjct: 181 GSGISKNDMKNAGIDRRKRKHERSM 203

[Close]

BLAST of MELO3C017626.jh1 vs. TAIR 10
Match: AT5G19910.1 (SOH1 family protein )

HSP 1 Score: 274.6 bits (701), Expect = 6.3e-74
Identity = 148/203 (72.91%), Postives = 159/203 (78.33%), Query Frame = 0


Query: 1   MASNHGLNEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60
           MAS   + ++A++ PS P N YKDPD GRQRFLLELEF+QCLANPTYIHYLAQNRY EDE
Sbjct: 1   MASPEEMGDDASEIPSPPKNTYKDPDGGRQRFLLELEFIQCLANPTYIHYLAQNRYFEDE 60

Query: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNKELAHRQQFYFWK 120
           AFIGYLKYLQYWQRPEYIKFIMYPHCL+FLELLQN NFR AMAHP NKELAHRQQFY+WK
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNPNFRTAMAHPANKELAHRQQFYYWK 120

Query: 121 NYRNNRLKHILPRPLPEPAALPPPVSAPPQAPVPAPTPAPTVAASPATAALSPMQYGIPP 180
           NYRNNRLKHILPRPLPEP    PPV+  P   +P P P+ T A SP   ALSPMQY    
Sbjct: 121 NYRNNRLKHILPRPLPEPVPPQPPVA--PSTSLP-PAPSATAALSP---ALSPMQY---- 180

Query: 181 GPGLPKND---MKGAGIDRRKRK 201
              L KND   M   GIDRRKRK
Sbjct: 181 NNMLSKNDTRNMGATGIDRRKRK 193

[Close]

BLAST of MELO3C017626.jh1 vs. TAIR 10
Match: AT5G19910.2 (SOH1 family protein )

HSP 1 Score: 258.8 bits (660), Expect = 3.6e-69
Identity = 148/233 (63.52%), Postives = 159/233 (68.24%), Query Frame = 0


Query: 1   MASNHGLNEEAADNPSSPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDE 60
           MAS   + ++A++ PS P N YKDPD GRQRFLLELEF+QCLANPTYIHYLAQNRY EDE
Sbjct: 1   MASPEEMGDDASEIPSPPKNTYKDPDGGRQRFLLELEFIQCLANPTYIHYLAQNRYFEDE 60

Query: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNSNFRNAMAHPGNK------------ 120
           AFIGYLKYLQYWQRPEYIKFIMYPHCL+FLELLQN NFR AMAHP NK            
Sbjct: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNPNFRTAMAHPANKWFKMLGYWCFWN 120

Query: 121 ------------------ELAHRQQFYFWKNYRNNRLKHILPRPLPEPAALPPPVSAPPQ 180
                             ELAHRQQFY+WKNYRNNRLKHILPRPLPEP    PPV+  P 
Sbjct: 121 VFWGLVEFRVSLVQNLAYELAHRQQFYYWKNYRNNRLKHILPRPLPEPVPPQPPVA--PS 180

Query: 181 APVPAPTPAPTVAASPATAALSPMQYGIPPGPGLPKND---MKGAGIDRRKRK 201
             +P P P+ T A SP   ALSPMQY       L KND   M   GIDRRKRK
Sbjct: 181 TSLP-PAPSATAALSP---ALSPMQY----NNMLSKNDTRNMGATGIDRRKRK 223

The following BLAST results are available for this feature:

BLAST of MELO3C017626.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008453845.1	6.63e-146	100.00	PREDICTED: mediator of RNA polymerase II transcription subunit 31 [Cucumis melo]...	[more]
XP_004146891.1	5.63e-138	95.15	mediator of RNA polymerase II transcription subunit 31 [Cucumis sativus] >KGN531...	[more]
XP_038880162.1	1.67e-132	94.66	mediator of RNA polymerase II transcription subunit 31 [Benincasa hispida]	[more]
XP_022141008.1	3.19e-126	90.87	mediator of RNA polymerase II transcription subunit 31 [Momordica charantia]	[more]
XP_022984406.1	3.35e-125	88.78	mediator of RNA polymerase II transcription subunit 31-like [Cucurbita maxima]	[more]

BLAST of MELO3C017626.jh1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VYB1	8.9e-73	72.91	Mediator of RNA polymerase II transcription subunit 31 OS=Arabidopsis thaliana O...	[more]
Q54NI7	1.3e-31	58.76	Putative mediator of RNA polymerase II transcription subunit 31 OS=Dictyostelium...	[more]
A0JNN3	3.4e-24	48.57	Mediator of RNA polymerase II transcription subunit 31 OS=Bos taurus OX=9913 GN=...	[more]
Q9CXU1	4.5e-24	48.57	Mediator of RNA polymerase II transcription subunit 31 OS=Mus musculus OX=10090 ...	[more]
Q9Y3C7	5.9e-24	48.57	Mediator of RNA polymerase II transcription subunit 31 OS=Homo sapiens OX=9606 G...	[more]

BLAST of MELO3C017626.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D0Y1	3.21e-146	100.00	Mediator of RNA polymerase II transcription subunit 31 OS=Cucumis melo var. maku...	[more]
A0A1S3BY12	3.21e-146	100.00	Mediator of RNA polymerase II transcription subunit 31 OS=Cucumis melo OX=3656 G...	[more]
A0A0A0KZ88	2.73e-138	95.15	Mediator of RNA polymerase II transcription subunit 31 OS=Cucumis sativus OX=365...	[more]
A0A6J1CJB2	1.54e-126	90.87	Mediator of RNA polymerase II transcription subunit 31 OS=Momordica charantia OX...	[more]
A0A6J1J551	1.62e-125	88.78	Mediator of RNA polymerase II transcription subunit 31 OS=Cucurbita maxima OX=36...	[more]

BLAST of MELO3C017626.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19910.1	6.3e-74	72.91	SOH1 family protein	[more]
AT5G19910.2	3.6e-69	63.52	SOH1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008831	Mediator complex, subunit Med31	PFAM	PF05669	Med31	coord: 30..122 e-value: 2.4E-35 score: 120.4
IPR008831	Mediator complex, subunit Med31	PANTHER	PTHR13186	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31	coord: 9..202
IPR038089	Mediator of RNA polymerase II, subunit Med31 superfamily	GENE3D	1.10.10.1340	Mediator of RNA polymerase II, submodule Med31 (Soh1)	coord: 17..119 e-value: 4.2E-41 score: 140.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 141..161
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 141..206
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 190..206
None	No IPR available	PANTHER	PTHR13186:SF1	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31	coord: 9..202

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C017626.jh1.t1	MELO3C017626.jh1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003712	transcription coregulator activity