MELO3C017608.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C017608.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionTetratricopeptide-like helical
Locationchr07: 24272636 .. 24273026 (-)
RNA-Seq ExpressionMELO3C017608.jh1
SyntenyMELO3C017608.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGGTATGGACGCTCAAGAATGGGAAAGAAACGAGATCGACGTTGTTCCACCACATTTATTAGCCGATGAAGAAGATGACGAGGATGGTGAATATGTAACGAGTACTATTAGTAACTATTGCTTTCGCGTTGATGGGTCCTTCGGGGGATGGCGTCGGAGAGATTGGAAAGCTGATGGCGCCCATCGCATTTTGGGGATTTTTTATAGTCTAAGCAAAGTCATAGAGAAAAGGGCTTCTAATGGGATGAATTCAGTGAGAATAATAGTTAGAACTATTTTAGGGTTTTTGATGGTGATGACCAATGAAGATAATTAGTGCACAAAGATCCAAGATGTAG

mRNA sequence

ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGGTATGGACGCTCAAGAATGGGAAAGAAACGAGATCGACGTTGTTCCACCACATTTATTAGCCGATGAAGAAGATGACGAGGATGGTGAATATGTAACGAGTACTATTAGTAACTATTGCTTTCGCGTTGATGGGTCCTTCGGGGGATGGCGTCGGAGAGATTGGAAAGCTGATGGCGCCCATCGCATTTTGGGGATTTTTTATAGTCTAAGCAAAGTCATAGAGAAAAGGGCTTCTAATGGGATGAATTCAGTGAGAATAATAGTTAGAACTATTTTAGGGTTTTTGATGGTGATGACCAATGAAGATAATTAGTGCACAAAGATCCAAGATGTAG

Coding sequence (CDS)

ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGGTATGGACGCTCAAGAATGGGAAAGAAACGAGATCGACGTTGTTCCACCACATTTATTAGCCGATGAAGAAGATGACGAGGATGGTGAATATGTAACGAGTACTATTAGTAACTATTGCTTTCGCGTTGATGGGTCCTTCGGGGGATGGCGTCGGAGAGATTGGAAAGCTGATGGCGCCCATCGCATTTTGGGGATTTTTTATAGTCTAAGCAAAGTCATAGAGAAAAGGGCTTCTAATGGGATGAATTCAGTGAGAATAATAGTTAGAACTATTTTAGGGTTTTTGATGGTGATGACCAATGAAGATAATTAG

Protein sequence

MSVSLEALAMAGIDSNEWGMDAQEWERNEIDVVPPHLLADEEDDEDGEYVTSTISNYCFRVDGSFGGWRRRDWKADGAHRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMTNEDN
Homology
BLAST of MELO3C017608.jh1 vs. NCBI nr
Match: KAA0044707.1 (Tetratricopeptide-like helical [Cucumis melo var. makuwa])

HSP 1 Score: 249 bits (635), Expect = 3.07e-83
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0

Query: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEIDVVPPHLLADEEDDEDGEYVTSTISNYCFR 60
           MSVSLEALAMAGIDSNEWGMDAQEWERNEIDVVPPHLLADEEDDEDGEYVTSTISNYCFR
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEIDVVPPHLLADEEDDEDGEYVTSTISNYCFR 60

Query: 61  VDGSFGGWRRRDWKADGAHRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMTNE 120
           VDGSFGGWRRRDWKADGAHRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMTNE
Sbjct: 61  VDGSFGGWRRRDWKADGAHRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMTNE 120

Query: 121 DN 122
           DN
Sbjct: 121 DN 122

BLAST of MELO3C017608.jh1 vs. NCBI nr
Match: TYK16880.1 (Tetratricopeptide-like helical [Cucumis melo var. makuwa])

HSP 1 Score: 235 bits (599), Expect = 1.20e-77
Identity = 117/118 (99.15%), Postives = 117/118 (99.15%), Query Frame = 0

Query: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEIDVVPPHLLADEEDDEDGEYVTSTISNYCFR 60
           MSVSLEALAMAGIDSNEWGMDAQEWERNEIDVVPPHLLADEEDDEDGEYVTSTISNYCFR
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEIDVVPPHLLADEEDDEDGEYVTSTISNYCFR 60

Query: 61  VDGSFGGWRRRDWKADGAHRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMT 118
           VDGSFGGWRRRDWKADGA RILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMT
Sbjct: 61  VDGSFGGWRRRDWKADGALRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMT 118

BLAST of MELO3C017608.jh1 vs. NCBI nr
Match: KAG7015383.1 (hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149 bits (375), Expect = 1.73e-43
Identity = 83/117 (70.94%), Postives = 91/117 (77.78%), Query Frame = 0

Query: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEIDV-VPPHLLADEEDDEDGEYVTSTISNYCF 60
           MSVSLEALAMAGI SNEW MDA+EWERNEI+  VPPHLLADE+DD+D   VTST+SNY F
Sbjct: 1   MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDN--VTSTVSNYSF 60

Query: 61  RVDGSFGGWRRRDWKADGAHRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMV 116
            V G F    R D  AD  H   GI  SLSK +EKRASNGM+SVRIIVRTILGFL+V
Sbjct: 61  PVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNGMSSVRIIVRTILGFLLV 115

BLAST of MELO3C017608.jh1 vs. NCBI nr
Match: KAG6577295.1 (hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 148 bits (373), Expect = 3.49e-43
Identity = 83/117 (70.94%), Postives = 91/117 (77.78%), Query Frame = 0

Query: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEIDV-VPPHLLADEEDDEDGEYVTSTISNYCF 60
           MSVSLEALAMAGI SNEW MDA+EWERNEI+  VPPHLLADE+DD+D   VTST+SNY F
Sbjct: 1   MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDN--VTSTVSNYSF 60

Query: 61  RVDGSFGGWRRRDWKADGAHRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMV 116
            V G F   RR D  A   H   GI  SLSK +EKRASNGM+SVRIIVRTILGFL+V
Sbjct: 61  PVAGFFDSLRREDGGAHDIHCFWGILCSLSKSLEKRASNGMSSVRIIVRTILGFLLV 115

BLAST of MELO3C017608.jh1 vs. NCBI nr
Match: XP_022943015.1 (uncharacterized protein LOC111447880 [Cucurbita moschata])

HSP 1 Score: 99.4 bits (246), Expect = 5.01e-24
Identity = 59/119 (49.58%), Postives = 75/119 (63.03%), Query Frame = 0

Query: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEIDV-VPPHLLADEEDDEDGEYVTSTISNYCF 60
           MSVSLEALAMAGIDSNEW MDA+EWERNE++  +PPHLLADE+D+ED E  T   +  C 
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEMEKDIPPHLLADEDDEED-EMSTKFPATRCS 60

Query: 61  RVDGSFGGWRRRDWKADGAHRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMT 118
                     R+D    G      I + L K+ EKR  N ++S+ I+   ++GFLM MT
Sbjct: 61  CC--------RKDDGVGGVSCSPTIMWHLRKITEKRDLNCLSSMEIVTSAVVGFLMFMT 110

BLAST of MELO3C017608.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TS68 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G004640 PE=4 SV=1)

HSP 1 Score: 249 bits (635), Expect = 1.48e-83
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0

Query: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEIDVVPPHLLADEEDDEDGEYVTSTISNYCFR 60
           MSVSLEALAMAGIDSNEWGMDAQEWERNEIDVVPPHLLADEEDDEDGEYVTSTISNYCFR
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEIDVVPPHLLADEEDDEDGEYVTSTISNYCFR 60

Query: 61  VDGSFGGWRRRDWKADGAHRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMTNE 120
           VDGSFGGWRRRDWKADGAHRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMTNE
Sbjct: 61  VDGSFGGWRRRDWKADGAHRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMTNE 120

Query: 121 DN 122
           DN
Sbjct: 121 DN 122

BLAST of MELO3C017608.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CZU0 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00110 PE=4 SV=1)

HSP 1 Score: 235 bits (599), Expect = 5.81e-78
Identity = 117/118 (99.15%), Postives = 117/118 (99.15%), Query Frame = 0

Query: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEIDVVPPHLLADEEDDEDGEYVTSTISNYCFR 60
           MSVSLEALAMAGIDSNEWGMDAQEWERNEIDVVPPHLLADEEDDEDGEYVTSTISNYCFR
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEIDVVPPHLLADEEDDEDGEYVTSTISNYCFR 60

Query: 61  VDGSFGGWRRRDWKADGAHRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMT 118
           VDGSFGGWRRRDWKADGA RILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMT
Sbjct: 61  VDGSFGGWRRRDWKADGALRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMT 118

BLAST of MELO3C017608.jh1 vs. ExPASy TrEMBL
Match: A0A0A0KWE7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1)

HSP 1 Score: 197 bits (500), Expect = 8.23e-63
Identity = 105/122 (86.07%), Postives = 108/122 (88.52%), Query Frame = 0

Query: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEIDVVPPHLLADEEDDEDGE--YVTSTISNYC 60
           MSVSLEALAMAGIDSNEW MDA+EWERNEIDVVPPHLLADEEDDEDG+    TSTISNYC
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDEDGDEHVTTSTISNYC 60

Query: 61  FRVDGSFGGWRRRDWKADGAHR--ILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMV 118
           F VDGSF GWR RD KADG H   ILGIF SLSKVIEKRASNGM+SVRIIVRTILGFLMV
Sbjct: 61  FPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGFLMV 120

BLAST of MELO3C017608.jh1 vs. ExPASy TrEMBL
Match: A0A6J1FX98 (uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC111447880 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.43e-24
Identity = 59/119 (49.58%), Postives = 75/119 (63.03%), Query Frame = 0

Query: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEIDV-VPPHLLADEEDDEDGEYVTSTISNYCF 60
           MSVSLEALAMAGIDSNEW MDA+EWERNE++  +PPHLLADE+D+ED E  T   +  C 
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEMEKDIPPHLLADEDDEED-EMSTKFPATRCS 60

Query: 61  RVDGSFGGWRRRDWKADGAHRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMT 118
                     R+D    G      I + L K+ EKR  N ++S+ I+   ++GFLM MT
Sbjct: 61  CC--------RKDDGVGGVSCSPTIMWHLRKITEKRDLNCLSSMEIVTSAVVGFLMFMT 110

BLAST of MELO3C017608.jh1 vs. ExPASy TrEMBL
Match: A0A1Q3CWR7 (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_28116 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.37e-13
Identity = 33/59 (55.93%), Postives = 45/59 (76.27%), Query Frame = 0

Query: 1  MSVSLEALAMAGIDSNEWGMDAQEWERNEIDVVPP-HLLADEEDDEDGEYVTSTISNYC 58
          MSVSLEALAMAG+D NEWG+D +EWER +++ +PP HLLA+EE+    +Y    +S +C
Sbjct: 1  MSVSLEALAMAGLDYNEWGLDTEEWERKDLETMPPPHLLAEEEEIVKRDYSFHFMSRFC 59

BLAST of MELO3C017608.jh1 vs. TAIR 10
Match: AT2G22320.1 (unknown protein; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 51.2 bits (121), Expect = 6.7e-07
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 0

Query: 5  LEALAMAGIDSNEWGMDAQEWERNEIDVVPPHLLADEEDDEDGE 49
          +EALAMAG+D  EWG+  +EWE  E  VVP HLLAD+  +E+ E
Sbjct: 1  MEALAMAGVDYQEWGLSIEEWELQE-SVVPLHLLADDFKEEEQE 43

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0044707.13.07e-83100.00Tetratricopeptide-like helical [Cucumis melo var. makuwa][more]
TYK16880.11.20e-7799.15Tetratricopeptide-like helical [Cucumis melo var. makuwa][more]
KAG7015383.11.73e-4370.94hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6577295.13.49e-4370.94hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022943015.15.01e-2449.58uncharacterized protein LOC111447880 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TS681.48e-83100.00Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A5D3CZU05.81e-7899.15Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A0A0KWE78.23e-6386.07Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1[more]
A0A6J1FX982.43e-2449.58uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC1114478... [more]
A0A1Q3CWR73.37e-1355.93Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_28116 PE=4... [more]
Match NameE-valueIdentityDescription
AT2G22320.16.7e-0756.82unknown protein; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacter... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C017608.jh1.t1MELO3C017608.jh1.t1mRNA