MELO3C017508 (gene) Melon (DHL92) v4

Overview


Name	MELO3C017508
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Glutamate receptor
Location	chr02: 22165578 .. 22165739 (-)
RNA-Seq Expression	MELO3C017508
Synteny	MELO3C017508

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACCTAATGCACAAACAACTCAATCTGGATCAGTGCGTTCTGTTTCTGAGATAGCAGAAGCTACTACACCCGACCATGATGATTCCATTGAAGAACCACACAAATTGGGCATAAGAATTCTAAGGCTCACTAAGCCAAGCATAATGCCCAATCCATGA

mRNA sequence

ATGGAACCTAATGCACAAACAACTCAATCTGGATCAGTGCGTTCTGTTTCTGAGATAGCAGAAGCTACTACACCCGACCATGATGATTCCATTGAAGAACCACACAAATTGGGCATAAGAATTCTAAGGCTCACTAAGCCAAGCATAATGCCCAATCCATGA

Coding sequence (CDS)

ATGGAACCTAATGCACAAACAACTCAATCTGGATCAGTGCGTTCTGTTTCTGAGATAGCAGAAGCTACTACACCCGACCATGATGATTCCATTGAAGAACCACACAAATTGGGCATAAGAATTCTAAGGCTCACTAAGCCAAGCATAATGCCCAATCCATGA

Protein sequence

MEPNAQTTQSGSVRSVSEIAEATTPDHDDSIEEPHKLGIRILRLTKPSIMPNP

Homology

[Close]

BLAST of MELO3C017508 vs. NCBI nr
Match: KAA0059725.1 (glutamate receptor 2.7-like [Cucumis melo var. makuwa])

HSP 1 Score: 107.1 bits (266), Expect = 4.8e-20
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1   MEPNAQTTQSGSVRSVSEIAEATTPDHDDSIEEPHKLGIRILRLTKPSIMPNP 54
           MEPNAQTTQSGSVRSVSEIAEATTPDHDDSIEEPHKLGIRILRLTKPSIMPNP
Sbjct: 911 MEPNAQTTQSGSVRSVSEIAEATTPDHDDSIEEPHKLGIRILRLTKPSIMPNP 963

[Close]

BLAST of MELO3C017508 vs. NCBI nr
Match: TYK09468.1 (glutamate receptor 2.7-like [Cucumis melo var. makuwa])

HSP 1 Score: 107.1 bits (266), Expect = 4.8e-20
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1   MEPNAQTTQSGSVRSVSEIAEATTPDHDDSIEEPHKLGIRILRLTKPSIMPNP 54
           MEPNAQTTQSGSVRSVSEIAEATTPDHDDSIEEPHKLGIRILRLTKPSIMPNP
Sbjct: 940 MEPNAQTTQSGSVRSVSEIAEATTPDHDDSIEEPHKLGIRILRLTKPSIMPNP 992

[Close]

BLAST of MELO3C017508 vs. ExPASy TrEMBL
Match: A0A5A7V1I8 (Glutamate receptor OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold551G00010 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.3e-20
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1   MEPNAQTTQSGSVRSVSEIAEATTPDHDDSIEEPHKLGIRILRLTKPSIMPNP 54
           MEPNAQTTQSGSVRSVSEIAEATTPDHDDSIEEPHKLGIRILRLTKPSIMPNP
Sbjct: 911 MEPNAQTTQSGSVRSVSEIAEATTPDHDDSIEEPHKLGIRILRLTKPSIMPNP 963

[Close]

BLAST of MELO3C017508 vs. ExPASy TrEMBL
Match: A0A5D3CE25 (Glutamate receptor 2.7-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G00640 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.3e-20
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1   MEPNAQTTQSGSVRSVSEIAEATTPDHDDSIEEPHKLGIRILRLTKPSIMPNP 54
           MEPNAQTTQSGSVRSVSEIAEATTPDHDDSIEEPHKLGIRILRLTKPSIMPNP
Sbjct: 940 MEPNAQTTQSGSVRSVSEIAEATTPDHDDSIEEPHKLGIRILRLTKPSIMPNP 992

[Close]

BLAST of MELO3C017508 vs. ExPASy TrEMBL
Match: A0A0A0LWR2 (PBPe domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G295160 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.5e-08
Identity = 34/41 (82.93%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 1   MEPNAQTTQSGSVRSVSEIAEATTPDHDDSIEEPHKLGIRI 42
           ME NAQTTQSGS  SVSEIAEATTP+H DS EEPH LGIRI
Sbjct: 186 MEHNAQTTQSGSEHSVSEIAEATTPNHGDSTEEPHNLGIRI 226

The following BLAST results are available for this feature:

BLAST of MELO3C017508 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0059725.1	4.8e-20	100.00	glutamate receptor 2.7-like [Cucumis melo var. makuwa]	[more]
TYK09468.1	4.8e-20	100.00	glutamate receptor 2.7-like [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C017508 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C017508 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V1I8	2.3e-20	100.00	Glutamate receptor OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold551G0...	[more]
A0A5D3CE25	2.3e-20	100.00	Glutamate receptor 2.7-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A0A0LWR2	3.5e-08	82.93	PBPe domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G295160 PE=4 S...	[more]

BLAST of MELO3C017508 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C017508.1	MELO3C017508.1	mRNA