MELO3C017493.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C017493.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionLPS-induced tumor necrosis factor alpha factor
Locationchr02: 20442641 .. 20443042 (+)
RNA-Seq ExpressionMELO3C017493.jh1
SyntenyMELO3C017493.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATCTATAATATATACAAGAGAAAGAAAGAGAAGAGCTACATATATATATATACAAAAATGGGGGCTGTTTTGGGAGCTTTGAGGATGGCGGCTGGTTGTGTTGTGGCCGTGGCAAGGGGTGCATCAGTGATTATGATGGTGGCACCAACTCTGACCCCTGTTGTTGCTCCTCTCATGGCTGTAGCCACTGTTGCTACGTCGGTCAATGGTGTTACGGGGATTTTAGGAATTTGATGATTATATTAAAATTATGTGCTGTGGAAAACTTATGTTTATAATGAAATTGGCTTGAACTATTGCATCTCTTCTCTTCTCTCTCTAGTCTGTAGTGTTAATTATCTAGTTGTTCCGTGCTCTTAACCGATCTTGCATGAATGATGAACAAAATCAATTTATTGTA

mRNA sequence

AAATCTATAATATATACAAGAGAAAGAAAGAGAAGAGCTACATATATATATATACAAAAATGGGGGCTGTTTTGGGAGCTTTGAGGATGGCGGCTGGTTGTGTTGTGGCCGTGGCAAGGGGTGCATCAGTGATTATGATGGTGGCACCAACTCTGACCCCTGTTGTTGCTCCTCTCATGGCTGTAGCCACTGTTGCTACGTCGGTCAATGGTGTTACGGGGATTTTAGGAATTTGATGATTATATTAAAATTATGTGCTGTGGAAAACTTATGTTTATAATGAAATTGGCTTGAACTATTGCATCTCTTCTCTTCTCTCTCTAGTCTGTAGTGTTAATTATCTAGTTGTTCCGTGCTCTTAACCGATCTTGCATGAATGATGAACAAAATCAATTTATTGTA

Coding sequence (CDS)

ATGGGGGCTGTTTTGGGAGCTTTGAGGATGGCGGCTGGTTGTGTTGTGGCCGTGGCAAGGGGTGCATCAGTGATTATGATGGTGGCACCAACTCTGACCCCTGTTGTTGCTCCTCTCATGGCTGTAGCCACTGTTGCTACGTCGGTCAATGGTGTTACGGGGATTTTAGGAATTTGA

Protein sequence

MGAVLGALRMAAGCVVAVARGASVIMMVAPTLTPVVAPLMAVATVATSVNGVTGILGI
Homology
BLAST of MELO3C017493.jh1 vs. NCBI nr
Match: TYJ99647.1 (hypothetical protein E5676_scaffold562G00240 [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 6.13e-09
Identity = 38/57 (66.67%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 1  MGAVLGALRMAAGCVVAVARGASVIMMVAPTLTPVVAPLMAVATVATSVNGVTGILG 57
          MG V   L+MA  C  AVA GASV+M VAP LTPVVAP+MA  TVATSV GV  ILG
Sbjct: 1  MGDVSATLKMAIDCASAVAMGASVVMTVAPMLTPVVAPVMAATTVATSVTGVMEILG 57

BLAST of MELO3C017493.jh1 vs. NCBI nr
Match: KAA0054811.1 (hypothetical protein E6C27_scaffold437G00990 [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 1.24e-08
Identity = 38/57 (66.67%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 1  MGAVLGALRMAAGCVVAVARGASVIMMVAPTLTPVVAPLMAVATVATSVNGVTGILG 57
          MG V   L+MA  C  AVA GASV+M VAP LTPVVAP+MA  TVATSV GV  ILG
Sbjct: 1  MGDVSATLKMAIDCASAVAMGASVVMTVAPMLTPVVAPVMASTTVATSVTGVMEILG 57

BLAST of MELO3C017493.jh1 vs. NCBI nr
Match: KAA0068093.1 (LPS-induced tumor necrosis factor alpha factor [Cucumis melo var. makuwa] >TYK26075.1 LPS-induced tumor necrosis factor alpha factor [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 6.61e-07
Identity = 34/47 (72.34%), Postives = 37/47 (78.72%), Query Frame = 0

Query: 12  AGCVVAVARGASVIMMVAPTLTPVVAPLMAVATVATSVNGVTGILGI 58
           A C   VA GASV+M VAP LTPVVAP+MA ATVATS+ GV GILGI
Sbjct: 182 ADCAPVVATGASVVMTVAPMLTPVVAPVMAAATVATSITGVMGILGI 228

BLAST of MELO3C017493.jh1 vs. NCBI nr
Match: TYK09492.1 (hypothetical protein E5676_scaffold499G00920 [Cucumis melo var. makuwa])

HSP 1 Score: 50.4 bits (119), Expect = 1.68e-06
Identity = 35/57 (61.40%), Postives = 39/57 (68.42%), Query Frame = 0

Query: 1  MGAVLGALRMAAGCVVAVARGASVIMMVAPTLTPVVAPLMAVATVATSVNGVTGILG 57
          M  V  AL+MAA C  AVA GASV+M VAP LTPVVAP+M  A V TSV  V  +LG
Sbjct: 1  MADVSAALKMAADCAPAVATGASVVMTVAPMLTPVVAPVMVAANVVTSVTVVLRVLG 57

BLAST of MELO3C017493.jh1 vs. NCBI nr
Match: KGN65426.1 (hypothetical protein Csa_019847 [Cucumis sativus])

HSP 1 Score: 47.0 bits (110), Expect = 5.90e-05
Identity = 31/52 (59.62%), Postives = 37/52 (71.15%), Query Frame = 0

Query: 7  ALRMAAGCVVAVARGASVIMMVAPTLTPVVAPLMAVATVATSVNGVTGILGI 58
          AL++AA C  AVA  ++V+M VAP L PVVAP+M  ATV TSV GV  I GI
Sbjct: 25 ALKLAADCAPAVATASNVVMTVAPFLAPVVAPVMVAATVVTSVTGVLKIFGI 76

BLAST of MELO3C017493.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BKI7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00240 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.97e-09
Identity = 38/57 (66.67%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 1  MGAVLGALRMAAGCVVAVARGASVIMMVAPTLTPVVAPLMAVATVATSVNGVTGILG 57
          MG V   L+MA  C  AVA GASV+M VAP LTPVVAP+MA  TVATSV GV  ILG
Sbjct: 1  MGDVSATLKMAIDCASAVAMGASVVMTVAPMLTPVVAPVMAATTVATSVTGVMEILG 57

BLAST of MELO3C017493.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UMM6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold437G00990 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 5.99e-09
Identity = 38/57 (66.67%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 1  MGAVLGALRMAAGCVVAVARGASVIMMVAPTLTPVVAPLMAVATVATSVNGVTGILG 57
          MG V   L+MA  C  AVA GASV+M VAP LTPVVAP+MA  TVATSV GV  ILG
Sbjct: 1  MGDVSATLKMAIDCASAVAMGASVVMTVAPMLTPVVAPVMASTTVATSVTGVMEILG 57

BLAST of MELO3C017493.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DRF6 (LPS-induced tumor necrosis factor alpha factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1185G00340 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.20e-07
Identity = 34/47 (72.34%), Postives = 37/47 (78.72%), Query Frame = 0

Query: 12  AGCVVAVARGASVIMMVAPTLTPVVAPLMAVATVATSVNGVTGILGI 58
           A C   VA GASV+M VAP LTPVVAP+MA ATVATS+ GV GILGI
Sbjct: 182 ADCAPVVATGASVVMTVAPMLTPVVAPVMAAATVATSITGVMGILGI 228

BLAST of MELO3C017493.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CE01 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G00920 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 8.13e-07
Identity = 35/57 (61.40%), Postives = 39/57 (68.42%), Query Frame = 0

Query: 1  MGAVLGALRMAAGCVVAVARGASVIMMVAPTLTPVVAPLMAVATVATSVNGVTGILG 57
          M  V  AL+MAA C  AVA GASV+M VAP LTPVVAP+M  A V TSV  V  +LG
Sbjct: 1  MADVSAALKMAADCAPAVATGASVVMTVAPMLTPVVAPVMVAANVVTSVTVVLRVLG 57

BLAST of MELO3C017493.jh1 vs. ExPASy TrEMBL
Match: A0A0A0LZP7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G420870 PE=4 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.86e-05
Identity = 31/52 (59.62%), Postives = 37/52 (71.15%), Query Frame = 0

Query: 7  ALRMAAGCVVAVARGASVIMMVAPTLTPVVAPLMAVATVATSVNGVTGILGI 58
          AL++AA C  AVA  ++V+M VAP L PVVAP+M  ATV TSV GV  I GI
Sbjct: 25 ALKLAADCAPAVATASNVVMTVAPFLAPVVAPVMVAATVVTSVTGVLKIFGI 76

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYJ99647.16.13e-0966.67hypothetical protein E5676_scaffold562G00240 [Cucumis melo var. makuwa][more]
KAA0054811.11.24e-0866.67hypothetical protein E6C27_scaffold437G00990 [Cucumis melo var. makuwa][more]
KAA0068093.16.61e-0772.34LPS-induced tumor necrosis factor alpha factor [Cucumis melo var. makuwa] >TYK26... [more]
TYK09492.11.68e-0661.40hypothetical protein E5676_scaffold499G00920 [Cucumis melo var. makuwa][more]
KGN65426.15.90e-0559.62hypothetical protein Csa_019847 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BKI72.97e-0966.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UMM65.99e-0966.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DRF63.20e-0772.34LPS-induced tumor necrosis factor alpha factor OS=Cucumis melo var. makuwa OX=11... [more]
A0A5D3CE018.13e-0761.40Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LZP72.86e-0559.62Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G420870 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C017493.jh1.t1MELO3C017493.jh1.t1mRNA