MELO3C017232.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C017232.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Unknown protein
Location	chr02: 22977297 .. 22978099 (-)
RNA-Seq Expression	MELO3C017232.jh1
Synteny	MELO3C017232.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAGATCTTTTTCCAGCTAATTACTTCTCAAAACACCAATCTCTCTCAGATCACACCACACTGATTTTGCAATGCAAATCTTGATCCCACAAAATTTACCAATTGGGTATGGCATGGAATACTCCCAATATCATAATACTTCAAAGCAACAAAAGAAAGACGACACCTCTAGAGAATCAAACCAAGTAGAAGAAGAGACCCAGAAACAAAACAAGAATCATCTGATTTCGAAGGCAAATACAGAACATTCAAAGTATCAGCAATTACTTATAATGGGAAAAAGAATCAAAGAGAAAACCGGTAATAGGAATTTTCTCCCGGCGTCCTACAATTGAATGTATTACTATAAGTGAATATAAAAACAGGTAGAAGAAAGCATGAATTGTATAACAATCAGAGAAGACTGGTCAACAAAATAAAACAATAACGAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGTAACTAGTGGGTCAGATCAAATGTGCCCCAATCTAATCGGCCATATCTGAGGCATCCATGTGGAATGCGGATGTGGGTGGGTCTCAAACTGTCCAAATGTCCATGTGACTTTGTCAAAAACTCAAAAGAAGAGAAAAGAATAAAGAACGTATCCCATTTAGTACTGAAAAACAGAGAAAATCAACAAGAAGAAGAAGAAGAAGAAGAAGAATATCCCTTTAACCTTCTCCTGGAGGTTCTTCAAACGGATCAGATTGTGGGTTTTTGAGGAGAATTCCAACAGTACAGTAAAGATCAGAGCTTTTGCTTTCCAT

mRNA sequence

ACAGATCTTTTTCCAGCTAATTACTTCTCAAAACACCAATCTCTCTCAGATCACACCACACTGATTTTGCAATGCAAATCTTGATCCCACAAAATTTACCAATTGGGTATGGCATGGAATACTCCCAATATCATAATACTTCAAAGCAACAAAAGAAAGACGACACCTCTAGAGAATCAAACCAAGTAGAAGAAGAGACCCAGAAACAAAACAAGAATCATCTGATTTCGAAGGCAAATACAGAACATTCAAAGTATCAGCAATTACTTATAATGGGAAAAAGAATCAAAGAGAAAACCGGTAATAGGAATTTTCTCCCGGCGTCCTACAATTGAATGTATTACTATAAGTGAATATAAAAACAGGTAGAAGAAAGCATGAATTGTATAACAATCAGAGAAGACTGGTCAACAAAATAAAACAATAACGAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGTAACTAGTGGGTCAGATCAAATGTGCCCCAATCTAATCGGCCATATCTGAGGCATCCATGTGGAATGCGGATGTGGGTGGGTCTCAAACTGTCCAAATGTCCATGTGACTTTGTCAAAAACTCAAAAGAAGAGAAAAGAATAAAGAACGTATCCCATTTAGTACTGAAAAACAGAGAAAATCAACAAGAAGAAGAAGAAGAAGAAGAAGAATATCCCTTTAACCTTCTCCTGGAGGTTCTTCAAACGGATCAGATTGTGGGTTTTTGAGGAGAATTCCAACAGTACAGTAAAGATCAGAGCTTTTGCTTTCCAT

Coding sequence (CDS)

ATGCAAATCTTGATCCCACAAAATTTACCAATTGGGTATGGCATGGAATACTCCCAATATCATAATACTTCAAAGCAACAAAAGAAAGACGACACCTCTAGAGAATCAAACCAAGTAGAAGAAGAGACCCAGAAACAAAACAAGAATCATCTGATTTCGAAGGCAAATACAGAACATTCAAAGTATCAGCAATTACTTATAATGGGAAAAAGAATCAAAGAGAAAACCGGTAATAGGAATTTTCTCCCGGCGTCCTACAATTGA

Protein sequence

MQILIPQNLPIGYGMEYSQYHNTSKQQKKDDTSRESNQVEEETQKQNKNHLISKANTEHSKYQQLLIMGKRIKEKTGNRNFLPASYN

Homology

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BLAST of MELO3C017232.jh1 vs. NCBI nr
Match: KAE8652436.1 (hypothetical protein Csa_013939 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 2.17e-17
Identity = 42/45 (93.33%), Postives = 42/45 (93.33%), Query Frame = 0


Query: 1  MQILIPQNLPIGYGMEYSQYHNTSKQQKKDDTSRESNQVEEETQK 45
          MQILIPQNLPIGY MEYSQYHNTSKQQ K DTSRESNQVEEETQK
Sbjct: 40 MQILIPQNLPIGYAMEYSQYHNTSKQQTKKDTSRESNQVEEETQK 84

The following BLAST results are available for this feature:

BLAST of MELO3C017232.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652436.1	2.17e-17	93.33	hypothetical protein Csa_013939 [Cucumis sativus]	[more]

BLAST of MELO3C017232.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C017232.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C017232.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 22..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C017232.jh1.t1	MELO3C017232.jh1.t1	mRNA