MELO3C017010 (gene) Melon (DHL92) v4

Overview


Name	MELO3C017010
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2
Location	chr07: 442254 .. 443948 (-)
RNA-Seq Expression	MELO3C017010
Synteny	MELO3C017010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGCTTCCATCTTCTTCATTCGATCCTTTCTGCAGTCGGATTTTGGTGATCAATTGAAAGTGTAGAGGGCAATTATGGGAGGCGGTGGACATGGAGCTGGAACTACTTACAAGGGCGTGACCATACACCCACCAAAGCGATGGCACACCGTCACCGGCAAGGGGCTGTGCGCCATTATGTGGTATAAACCCTAGCTTCATTAGTTTCCGATCGAGCAATTCTATTGAAGGAACCTAATTTTGATTTTCCTGTTTCAGCCAAATTGCCTCATAGTTAATTTCTTTACTTTCTTTTTCTGTTTTACAAATCCTGCGTCTATTCCGATCTGTCCTCGTCGCATTATTCCAAATAAATGCATCGCGCTCGAGTGGAGTTACAAGTTTTAATAATATCTTGATGCCAGATGCTATATCCGAGTTCATCGTCTCGTATGCAATTTGATGTTGAGAATCAGTAGGATTGCTATTGAGAAATTGGCATCTGGGTATTGACCAAATTTTTTATGACTATCTTTCAGGTTTTGGGTGCTATACAGGGCGAAACAAGATGGACCTGTAGTACTGGTAAAAATCACTGTTTCCTTAATCGTAAATTATATTTCTACTTATTATTGGTTAAAATCTCTAAATTTTCTGGCTGAAGTTCTTGAGGATATATATGTTATAGGGCAATCTTTGGAGCGATTTAAAATCATTTGTTGTTTTTAAATTTAGTAGAAAAATGTTGCAATCATTCAAAATCCATTATATTTCTAATAGTATGGAAAATTCAATTAGAAGTGTAAAATTAAACATTAAATTGATTTTAAGTGATTAAAGCCTAACCTTGTGTTTGGAAGTTATTTTAAATATGACAAAAAGTGACGTTAACCATTTTCAAAACATTTTGTTGCCATTTTTAGCTTACACAGTATGTATTTTCTATTCCAGAAAATCTAACTTTTGTAATATTTGTTACGATCAGGGCTGGAGACATCCATGGGAAGGCCATGGTCATGGTGACCATGGTGACCATGGGCATGGGCACTAGGTATTGTTTTTATTATTTACCTCTCTTTCCAAATTTCCCCAATTAATTATCTGTTTTTATAGAGAAAAAAAAGTCAAAACAAAGTGTGTCCTAGCATTCTGATATAATTACAACACTGAACTATTAGCTATTTGACATCAGGTAATATGAGCGCTATCAGCTATGGGCACTTTTTTTTTTTTTTGGTTGGAGTGCATTTCTATTGATAAGCTTTCCAGTTTACTTGTAGTGGCTCGATGCTAATGGTGGGCGAAGGGGAAATGGCAAGGCCTCAGTTGCAGGTTATCTATTTGAACGTTAAGAGTACCATATTTGCTAAGTTCTTTTCAAATAAGGATATTGTGATAGCCAAATGGATATAAACATCACTTCATCATTTTTATTTTGTAATCATGAATTCTTCTGATGTGTTTTGAATATTTAATTTGTGTTCAATCACAGCTGTGGTTGAGTTGAAGCAAAGATCAATGCGCTATTTCTGAATATAGGTTGTTCTTTTATTTCATTATGTCTTTTGCATGGCGCATACCTTTCTTTTAAATTAAGGTTATTCCATTTGAATAATTTGATCTGCTTAAACTGAAATTCACGTACCCTTCAATCTAGTGTCACAACAATGGGATTTTATTTGCCATGAGACAGTTACAGGCATTGTATTTGCATAAT

mRNA sequence

AAGCTTCCATCTTCTTCATTCGATCCTTTCTGCAGTCGGATTTTGGTGATCAATTGAAAGTGTAGAGGGCAATTATGGGAGGCGGTGGACATGGAGCTGGAACTACTTACAAGGGCGTGACCATACACCCACCAAAGCGATGGCACACCGTCACCGGCAAGGGGCTGTGCGCCATTATGTGGTTTTGGGTGCTATACAGGGCGAAACAAGATGGACCTGTAGTACTGGGCTGGAGACATCCATGGGAAGGCCATGGTCATGGTGACCATGGTGACCATGGGCATGGGCACTAGAGAAAAAAAAGTCAAAACAAAGTGTGTCCTAGCATTCTGATATAATTACAACACTGAACTATTAGCTATTTGACATCAGTTTACTTGTAGTGGCTCGATGCTAATGGTGGGCGAAGGGGAAATGGCAAGGCCTCAGTTGCAGGTTATCTATTTGAACGTTAAGAGTACCATATTTGCTAAGTTCTTTTCAAATAAGGATATTGTGATAGCCAAATGGATATAAACATCACTTCATCATTTTTATTTTGTAATCATGAATTCTTCTGATGTGTTTTGAATATTTAATTTGTGTTCAATCACAGCTGTGGTTGAGTTGAAGCAAAGATCAATGCGCTATTTCTGAATATAGGTTGTTCTTTTATTTCATTATGTCTTTTGCATGGCGCATACCTTTCTTTTAAATTAAGGTTATTCCATTTGAATAATTTGATCTGCTTAAACTGAAATTCACGTACCCTTCAATCTAGTGTCACAACAATGGGATTTTATTTGCCATGAGACAGTTACAGGCATTGTATTTGCATAAT

Coding sequence (CDS)

ATGGGAGGCGGTGGACATGGAGCTGGAACTACTTACAAGGGCGTGACCATACACCCACCAAAGCGATGGCACACCGTCACCGGCAAGGGGCTGTGCGCCATTATGTGGTTTTGGGTGCTATACAGGGCGAAACAAGATGGACCTGTAGTACTGGGCTGGAGACATCCATGGGAAGGCCATGGTCATGGTGACCATGGTGACCATGGGCATGGGCACTAG

Protein sequence

MGGGGHGAGTTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWEGHGHGDHGDHGHGH

Homology

[Close]

BLAST of MELO3C017010 vs. NCBI nr
Match: XP_008452937.1 (PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucumis melo] >XP_008452938.1 PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucumis melo])

HSP 1 Score: 167.2 bits (422), Expect = 5.3e-38
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MGGGGHGAGTTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWEGH 60
          MGGGGHGAGTTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWEGH
Sbjct: 1  MGGGGHGAGTTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWEGH 60

Query: 61 GHGDHGDHGHGH 73
          GHGDHGDHGHGH
Sbjct: 61 GHGDHGDHGHGH 72

[Close]

BLAST of MELO3C017010 vs. NCBI nr
Match: XP_004145533.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucumis sativus] >XP_011654263.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucumis sativus] >KGN55485.1 hypothetical protein Csa_012149 [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 8.0e-34
Identity = 64/67 (95.52%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MGGGGHGAGTTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWEGH 60
          MGGGGHGAGTT+KGVTIHPPKRWHTVTGKGLCA+MWFWVLYRAKQDGPVVLGWRHPWEGH
Sbjct: 1  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGH 60

Query: 61 GHGDHGD 68
          GHGDHG+
Sbjct: 61 GHGDHGN 67

[Close]

BLAST of MELO3C017010 vs. NCBI nr
Match: PIA46969.1 (hypothetical protein AQUCO_01500480v1 [Aquilegia coerulea])

HSP 1 Score: 142.1 bits (357), Expect = 1.8e-30
Identity = 62/75 (82.67%), Postives = 66/75 (88.00%), Query Frame = 0


Query: 1  MGGG---GHGAGTTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPW 60
          MGGG   GHG  TTYKG T+H PKRWHTVTGKG+CA+MWFW+LYRAKQDGPVVLGWRHPW
Sbjct: 1  MGGGHGDGHGTSTTYKGFTVHQPKRWHTVTGKGMCALMWFWILYRAKQDGPVVLGWRHPW 60

Query: 61 EGHGHGDHGDHGHGH 73
          EGHGHGDH  HGHGH
Sbjct: 61 EGHGHGDH-SHGHGH 74

[Close]

BLAST of MELO3C017010 vs. NCBI nr
Match: PIA46970.1 (hypothetical protein AQUCO_01500480v1 [Aquilegia coerulea])

HSP 1 Score: 142.1 bits (357), Expect = 1.8e-30
Identity = 62/75 (82.67%), Postives = 66/75 (88.00%), Query Frame = 0


Query: 1  MGGG---GHGAGTTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPW 60
          MGGG   GHG  TTYKG T+H PKRWHTVTGKG+CA+MWFW+LYRAKQDGPVVLGWRHPW
Sbjct: 1  MGGGHGDGHGTSTTYKGFTVHQPKRWHTVTGKGMCALMWFWILYRAKQDGPVVLGWRHPW 60

Query: 61 EGHGHGDHGDHGHGH 73
          EGHGHGDH  HGHGH
Sbjct: 61 EGHGHGDH-SHGHGH 74

[Close]

BLAST of MELO3C017010 vs. NCBI nr
Match: XP_038897102.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Benincasa hispida] >XP_038897103.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Benincasa hispida] >XP_038897104.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Benincasa hispida])

HSP 1 Score: 141.7 bits (356), Expect = 2.4e-30
Identity = 62/72 (86.11%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 1  MGGGGHGAGTTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWEGH 60
          MGGGGHGAGTTYKG+T+H PKRWHTVTGKGLCA+MWFWVLYRAKQDGPVVLGWRHPWEG 
Sbjct: 1  MGGGGHGAGTTYKGMTLHQPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEG- 60

Query: 61 GHGDHGDHGHGH 73
              HGDHGH H
Sbjct: 61 ----HGDHGHEH 67

[Close]

BLAST of MELO3C017010 vs. ExPASy Swiss-Prot
Match: Q8LDK3 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 OS=Arabidopsis thaliana OX=3702 GN=At1g76200 PE=1 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 4.6e-32
Identity = 56/68 (82.35%), Postives = 61/68 (89.71%), Query Frame = 0


Query: 1  MGGGGHGAGTTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWEGH 60
          MGGGGHG G TYKGVT+H PK WHTVTGKGLCA+MWFW+LYRAKQDGPVV+GWRHPW+GH
Sbjct: 1  MGGGGHGGGITYKGVTVHTPKTWHTVTGKGLCAVMWFWILYRAKQDGPVVMGWRHPWDGH 60

Query: 61 GHGDHGDH 69
          G   HGDH
Sbjct: 61 GDHGHGDH 68

[Close]

BLAST of MELO3C017010 vs. ExPASy TrEMBL
Match: A0A1S3BV22 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 OS=Cucumis melo OX=3656 GN=LOC103493798 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 2.6e-38
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MGGGGHGAGTTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWEGH 60
          MGGGGHGAGTTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWEGH
Sbjct: 1  MGGGGHGAGTTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWEGH 60

Query: 61 GHGDHGDHGHGH 73
          GHGDHGDHGHGH
Sbjct: 61 GHGDHGDHGHGH 72

[Close]

BLAST of MELO3C017010 vs. ExPASy TrEMBL
Match: A0A0A0L0L4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G653460 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 3.9e-34
Identity = 64/67 (95.52%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MGGGGHGAGTTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWEGH 60
          MGGGGHGAGTT+KGVTIHPPKRWHTVTGKGLCA+MWFWVLYRAKQDGPVVLGWRHPWEGH
Sbjct: 1  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGH 60

Query: 61 GHGDHGD 68
          GHGDHG+
Sbjct: 61 GHGDHGN 67

[Close]

BLAST of MELO3C017010 vs. ExPASy TrEMBL
Match: A0A2G5DTY4 (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_01500480v1 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 8.9e-31
Identity = 62/75 (82.67%), Postives = 66/75 (88.00%), Query Frame = 0


Query: 1  MGGG---GHGAGTTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPW 60
          MGGG   GHG  TTYKG T+H PKRWHTVTGKG+CA+MWFW+LYRAKQDGPVVLGWRHPW
Sbjct: 1  MGGGHGDGHGTSTTYKGFTVHQPKRWHTVTGKGMCALMWFWILYRAKQDGPVVLGWRHPW 60

Query: 61 EGHGHGDHGDHGHGH 73
          EGHGHGDH  HGHGH
Sbjct: 61 EGHGHGDH-SHGHGH 74

[Close]

BLAST of MELO3C017010 vs. ExPASy TrEMBL
Match: A0A2G5DTY5 (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_01500480v1 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 8.9e-31
Identity = 62/75 (82.67%), Postives = 66/75 (88.00%), Query Frame = 0


Query: 1  MGGG---GHGAGTTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPW 60
          MGGG   GHG  TTYKG T+H PKRWHTVTGKG+CA+MWFW+LYRAKQDGPVVLGWRHPW
Sbjct: 1  MGGGHGDGHGTSTTYKGFTVHQPKRWHTVTGKGMCALMWFWILYRAKQDGPVVLGWRHPW 60

Query: 61 EGHGHGDHGDHGHGH 73
          EGHGHGDH  HGHGH
Sbjct: 61 EGHGHGDH-SHGHGH 74

[Close]

BLAST of MELO3C017010 vs. ExPASy TrEMBL
Match: A0A6J1ILY9 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111476472 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.5e-30
Identity = 62/72 (86.11%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 1  MGGGGHGAGTTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWEGH 60
          MGGGGHGAGTT+KG+TIH PKRWHTVTGKGLCA+MWFWVLYRAKQDGPVVLGWRHPWEG 
Sbjct: 1  MGGGGHGAGTTFKGMTIHQPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEG- 60

Query: 61 GHGDHGDHGHGH 73
              HGDHGH H
Sbjct: 61 ----HGDHGHDH 67

[Close]

BLAST of MELO3C017010 vs. TAIR 10
Match: AT1G76200.1 (unknown protein; Has 96 Blast hits to 96 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 47; Plants - 38; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). )

HSP 1 Score: 137.9 bits (346), Expect = 3.2e-33
Identity = 56/68 (82.35%), Postives = 61/68 (89.71%), Query Frame = 0


Query: 1  MGGGGHGAGTTYKGVTIHPPKRWHTVTGKGLCAIMWFWVLYRAKQDGPVVLGWRHPWEGH 60
          MGGGGHG G TYKGVT+H PK WHTVTGKGLCA+MWFW+LYRAKQDGPVV+GWRHPW+GH
Sbjct: 1  MGGGGHGGGITYKGVTVHTPKTWHTVTGKGLCAVMWFWILYRAKQDGPVVMGWRHPWDGH 60

Query: 61 GHGDHGDH 69
          G   HGDH
Sbjct: 61 GDHGHGDH 68

The following BLAST results are available for this feature:

BLAST of MELO3C017010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008452937.1	5.3e-38	100.00	PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucumis ...	[more]
XP_004145533.1	8.0e-34	95.52	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucumis sativus] >X...	[more]
PIA46969.1	1.8e-30	82.67	hypothetical protein AQUCO_01500480v1 [Aquilegia coerulea]	[more]
PIA46970.1	1.8e-30	82.67	hypothetical protein AQUCO_01500480v1 [Aquilegia coerulea]	[more]
XP_038897102.1	2.4e-30	86.11	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Benincasa hispida] ...	[more]

BLAST of MELO3C017010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LDK3	4.6e-32	82.35	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 OS=Arabidopsis thali...	[more]

BLAST of MELO3C017010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BV22	2.6e-38	100.00	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 OS=Cucumis melo OX=3...	[more]
A0A0A0L0L4	3.9e-34	95.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G653460 PE=4 SV=1	[more]
A0A2G5DTY4	8.9e-31	82.67	Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_01500480v1 PE=4...	[more]
A0A2G5DTY5	8.9e-31	82.67	Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_01500480v1 PE=4...	[more]
A0A6J1ILY9	1.5e-30	86.11	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 OS=Cucurbita maxima ...	[more]

BLAST of MELO3C017010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G76200.1	3.2e-33	82.35	unknown protein; Has 96 Blast hits to 96 proteins in 48 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044980	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, plant/fungi	PANTHER	PTHR36987	NADH DEHYDROGENASE [UBIQUINONE] 1 BETA SUBCOMPLEX SUBUNIT 2-LIKE	coord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C017010.1	MELO3C017010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0005747	mitochondrial respiratory chain complex I