MELO3C016982.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C016982.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Unknown protein
Location	chr07: 687144 .. 687437 (+)
RNA-Seq Expression	MELO3C016982.jh1
Synteny	MELO3C016982.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATTCACTCAAAGCAAGTTCGTCGTTGTCCACAAAATGGTACTATCAACGCCAAATCTTACAGACCTCCACACAAACAAAAACGAAGTCTAAACAAGGACAGGGGGGTTACGCTTCAAGTGACAAGTTCACTCTGTAATACAAACGAGCGATTATTCTACGCCGGAACCTCTACCTTTGCTGTCTCACCACCACCAAGTTCTATACCTCTACCCACTTTTGTAATGAAGCCTGGTCTGTTTAGATCAACTACAGATGGAAGTACTCGGAACTCACGGACACAAAAGTAG

mRNA sequence

ATGGAAATTCACTCAAAGCAAGTTCGTCGTTGTCCACAAAATGGTACTATCAACGCCAAATCTTACAGACCTCCACACAAACAAAAACGAAGTCTAAACAAGGACAGGGGGGTTACGCTTCAAGTGACAAGTTCACTCTGTAATACAAACGAGCGATTATTCTACGCCGGAACCTCTACCTTTGCTGTCTCACCACCACCAAGTTCTATACCTCTACCCACTTTTGTAATGAAGCCTGGTCTGTTTAGATCAACTACAGATGGAAGTACTCGGAACTCACGGACACAAAAGTAG

Coding sequence (CDS)

ATGGAAATTCACTCAAAGCAAGTTCGTCGTTGTCCACAAAATGGTACTATCAACGCCAAATCTTACAGACCTCCACACAAACAAAAACGAAGTCTAAACAAGGACAGGGGGGTTACGCTTCAAGTGACAAGTTCACTCTGTAATACAAACGAGCGATTATTCTACGCCGGAACCTCTACCTTTGCTGTCTCACCACCACCAAGTTCTATACCTCTACCCACTTTTGTAATGAAGCCTGGTCTGTTTAGATCAACTACAGATGGAAGTACTCGGAACTCACGGACACAAAAGTAG

Protein sequence

MEIHSKQVRRCPQNGTINAKSYRPPHKQKRSLNKDRGVTLQVTSSLCNTNERLFYAGTSTFAVSPPPSSIPLPTFVMKPGLFRSTTDGSTRNSRTQK

Homology

[Close]

BLAST of MELO3C016982.jh1 vs. NCBI nr
Match: KAA0064603.1 (hypothetical protein E6C27_scaffold255G003250 [Cucumis melo var. makuwa] >TYK19987.1 hypothetical protein E5676_scaffold134G001030 [Cucumis melo var. makuwa])

HSP 1 Score: 192 bits (487), Expect = 1.85e-61
Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MEIHSKQVRRCPQNGTINAKSYRPPHKQKRSLNKDRGVTLQVTSSLCNTNERLFYAGTST 60
          MEIHSKQVRRCPQNGTINA SYRPPHKQKRSLNKDRGVTLQVTSSLCNTNERLFYAGTST
Sbjct: 1  MEIHSKQVRRCPQNGTINAISYRPPHKQKRSLNKDRGVTLQVTSSLCNTNERLFYAGTST 60

Query: 61 FAVSPPPSSIPLPTFVMKPGLFRSTTDGSTRNSRTQK 97
          FAVSPPPSSIPLPTFVMKPGLFRSTTDGSTRNSRTQK
Sbjct: 61 FAVSPPPSSIPLPTFVMKPGLFRSTTDGSTRNSRTQK 97

[Close]

BLAST of MELO3C016982.jh1 vs. NCBI nr
Match: KGN55453.1 (hypothetical protein Csa_012035 [Cucumis sativus])

HSP 1 Score: 135 bits (341), Expect = 3.86e-39
Identity = 72/99 (72.73%), Postives = 81/99 (81.82%), Query Frame = 0


Query: 1  MEIHSKQ----VRRCPQNGTINAKSYRPPHKQKRSLNKDRGVTLQVTSSLCNTNERLFYA 60
          MEI+SK     V RCPQ+G+ NA   RPP+KQK+SLNK + V  QVTSSLCNT ER+FYA
Sbjct: 1  MEINSKDSSIHVLRCPQDGSKNAIPCRPPNKQKQSLNKAKVVKFQVTSSLCNTKERIFYA 60

Query: 61 GTSTFAVSPPPSSIPLPTFVMKPGLFRSTTDGSTRNSRT 95
          GTSTF +SPPPSSIPLPTFVMK GLFRST DGST+NSRT
Sbjct: 61 GTSTFGISPPPSSIPLPTFVMKTGLFRSTIDGSTQNSRT 99

[Close]

BLAST of MELO3C016982.jh1 vs. ExPASy TrEMBL
Match: A0A5D3D8T1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G001030 PE=4 SV=1)

HSP 1 Score: 192 bits (487), Expect = 8.95e-62
Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MEIHSKQVRRCPQNGTINAKSYRPPHKQKRSLNKDRGVTLQVTSSLCNTNERLFYAGTST 60
          MEIHSKQVRRCPQNGTINA SYRPPHKQKRSLNKDRGVTLQVTSSLCNTNERLFYAGTST
Sbjct: 1  MEIHSKQVRRCPQNGTINAISYRPPHKQKRSLNKDRGVTLQVTSSLCNTNERLFYAGTST 60

Query: 61 FAVSPPPSSIPLPTFVMKPGLFRSTTDGSTRNSRTQK 97
          FAVSPPPSSIPLPTFVMKPGLFRSTTDGSTRNSRTQK
Sbjct: 61 FAVSPPPSSIPLPTFVMKPGLFRSTTDGSTRNSRTQK 97

[Close]

BLAST of MELO3C016982.jh1 vs. ExPASy TrEMBL
Match: A0A0A0L158 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652660 PE=4 SV=1)

HSP 1 Score: 135 bits (341), Expect = 1.87e-39
Identity = 72/99 (72.73%), Postives = 81/99 (81.82%), Query Frame = 0


Query: 1  MEIHSKQ----VRRCPQNGTINAKSYRPPHKQKRSLNKDRGVTLQVTSSLCNTNERLFYA 60
          MEI+SK     V RCPQ+G+ NA   RPP+KQK+SLNK + V  QVTSSLCNT ER+FYA
Sbjct: 1  MEINSKDSSIHVLRCPQDGSKNAIPCRPPNKQKQSLNKAKVVKFQVTSSLCNTKERIFYA 60

Query: 61 GTSTFAVSPPPSSIPLPTFVMKPGLFRSTTDGSTRNSRT 95
          GTSTF +SPPPSSIPLPTFVMK GLFRST DGST+NSRT
Sbjct: 61 GTSTFGISPPPSSIPLPTFVMKTGLFRSTIDGSTQNSRT 99

The following BLAST results are available for this feature:

BLAST of MELO3C016982.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0064603.1	1.85e-61	98.97	hypothetical protein E6C27_scaffold255G003250 [Cucumis melo var. makuwa] >TYK199...	[more]
KGN55453.1	3.86e-39	72.73	hypothetical protein Csa_012035 [Cucumis sativus]	[more]

BLAST of MELO3C016982.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C016982.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D8T1	8.95e-62	98.97	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0L158	1.87e-39	72.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652660 PE=4 SV=1	[more]

BLAST of MELO3C016982.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C016982.jh1.t1	MELO3C016982.jh1.t1	mRNA