MELO3C016791.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C016791.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	F-box protein GID2-like
Location	chr07: 2172136 .. 2173369 (+)
RNA-Seq Expression	MELO3C016791.jh1
Synteny	MELO3C016791.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTTCATCCTCAATCCTCAATCTTCATTACCCAATTCCCGTTTCTTTCCTTATCAATTCCATCCTTATTAAACCTCACCCACTATGGTTTCTCTCAATTTTTCCATTTCTTTTCACTAAAACCGGATTTTGCGATTTGTTTTTGTGATGAAGCGAGTCGTTTCAGATGGGGTTGGGGATCGGAAGATGGGGAAGAAACCTAAGGCGGAAACCCAAGATTTTACCCGTGGAGGAGGAGGACGAGAAGACTGCTCCGACAAGACCGGATTTATGAATTTGGATGATAATTTGTTGTTTGAGGTTTTTAAACATGTGGATGCTAGGACTTTGGCTATGGCGGCGTGTGTGAGCAAGCAATGGCATAAAACCGCCGAAGATGAGCGGCTTTGGGAGCTGATCTGCACCAGACACTGGGCTAACACCGGCTGCGGCAACCAACAACTCCGATCTGTAGTTCTCGCCCTCGGTGGCTTCCGTCGACTTCACTCCCTCTTCATCTGGCCTCTTACCAAGCCCCAATCCTCATCCTCCTCCTCTTCCTCCTCCTCACCTTCCTCCACATCTTCATCCGCATCCTCTTCCTCATCGGCATCTTGGTCTCCGTTTCCGGCAATGATTGGATCGAAACCGCCGGCCCGGTGGGGGAAAGATGAGGTCCATCTCTCACTTTCCCTTCTCTCAATTCGTTACTACGAGAAGATGAATTTCAGCAACAGAGGCAGATGAGTGGCTTGGCTTCCATATTCAGTCCATTTAACCATTTTCCTTTCAAATTTGGCAATTGAAATTTCCCTTTCAATGTGTTTTGGATTTGATCTGGGGTTTGTTCTTTTTTTTTTTTTTTTTTCTTTCTTTCTTTCTCTTCTCTTTCCTTTTGTTTAATTAGATCTGTATCTGATTTGGGTGTGTAGTTTATAAAACAACATAAATTAAATCTCTAACTTTGTTTATCTATCCATCTGATCACATCTATAATTACATATGAAAAAGAAAAGAATTGCAGGAGAGAAAGAAGATGAACCAATAAATGGAAAAAAGCTGTAATGATAAAAAAAGAAAAAGAAAAAAGAAGAAGAAGAAGAAGAAAGAGACGACAGATGTAAAAAGAGGATGGGGATTGAGAAGTTGGAGAATTGAGGTTAATGAAAGAAGAAGGAAATGGAAATGCCCCCGTAAGCTTGTAGACAAATAGCATAAGACAAATAGAGGAGTTGGCTTTTCGAAATTACAGAA

mRNA sequence

TTTTTTCATCCTCAATCCTCAATCTTCATTACCCAATTCCCGTTTCTTTCCTTATCAATTCCATCCTTATTAAACCTCACCCACTATGGTTTCTCTCAATTTTTCCATTTCTTTTCACTAAAACCGGATTTTGCGATTTGTTTTTGTGATGAAGCGAGTCGTTTCAGATGGGGTTGGGGATCGGAAGATGGGGAAGAAACCTAAGGCGGAAACCCAAGATTTTACCCGTGGAGGAGGAGGACGAGAAGACTGCTCCGACAAGACCGGATTTATGAATTTGGATGATAATTTGTTGTTTGAGGTTTTTAAACATGTGGATGCTAGGACTTTGGCTATGGCGGCGTGTGTGAGCAAGCAATGGCATAAAACCGCCGAAGATGAGCGGCTTTGGGAGCTGATCTGCACCAGACACTGGGCTAACACCGGCTGCGGCAACCAACAACTCCGATCTGTAGTTCTCGCCCTCGGTGGCTTCCGTCGACTTCACTCCCTCTTCATCTGGCCTCTTACCAAGCCCCAATCCTCATCCTCCTCCTCTTCCTCCTCCTCACCTTCCTCCACATCTTCATCCGCATCCTCTTCCTCATCGGCATCTTGGTCTCCGTTTCCGGCAATGATTGGATCGAAACCGCCGGCCCGGTGGGGGAAAGATGAGGTCCATCTCTCACTTTCCCTTCTCTCAATTCGTTACTACGAGAAGATGAATTTCAGCAACAGAGGCAGATGAGTGGCTTGGCTTCCATATTCAGTCCATTTAACCATTTTCCTTTCAAATTTGGCAATTGAAATTTCCCTTTCAATGTGTTTTGGATTTGATCTGGGGTTTGTTCTTTTTTTTTTTTTTTTTTCTTTCTTTCTTTCTCTTCTCTTTCCTTTTGTTTAATTAGATCTGTATCTGATTTGGGTGTGTAGTTTATAAAACAACATAAATTAAATCTCTAACTTTGTTTATCTATCCATCTGATCACATCTATAATTACATATGAAAAAGAAAAGAATTGCAGGAGAGAAAGAAGATGAACCAATAAATGGAAAAAAGCTGTAATGATAAAAAAAGAAAAAGAAAAAAGAAGAAGAAGAAGAAGAAAGAGACGACAGATGTAAAAAGAGGATGGGGATTGAGAAGTTGGAGAATTGAGGTTAATGAAAGAAGAAGGAAATGGAAATGCCCCCGTAAGCTTGTAGACAAATAGCATAAGACAAATAGAGGAGTTGGCTTTTCGAAATTACAGAA

Coding sequence (CDS)

ATGAAGCGAGTCGTTTCAGATGGGGTTGGGGATCGGAAGATGGGGAAGAAACCTAAGGCGGAAACCCAAGATTTTACCCGTGGAGGAGGAGGACGAGAAGACTGCTCCGACAAGACCGGATTTATGAATTTGGATGATAATTTGTTGTTTGAGGTTTTTAAACATGTGGATGCTAGGACTTTGGCTATGGCGGCGTGTGTGAGCAAGCAATGGCATAAAACCGCCGAAGATGAGCGGCTTTGGGAGCTGATCTGCACCAGACACTGGGCTAACACCGGCTGCGGCAACCAACAACTCCGATCTGTAGTTCTCGCCCTCGGTGGCTTCCGTCGACTTCACTCCCTCTTCATCTGGCCTCTTACCAAGCCCCAATCCTCATCCTCCTCCTCTTCCTCCTCCTCACCTTCCTCCACATCTTCATCCGCATCCTCTTCCTCATCGGCATCTTGGTCTCCGTTTCCGGCAATGATTGGATCGAAACCGCCGGCCCGGTGGGGGAAAGATGAGGTCCATCTCTCACTTTCCCTTCTCTCAATTCGTTACTACGAGAAGATGAATTTCAGCAACAGAGGCAGATGA

Protein sequence

MKRVVSDGVGDRKMGKKPKAETQDFTRGGGGREDCSDKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

Homology

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BLAST of MELO3C016791.jh1 vs. NCBI nr
Match: XP_008452610.1 (PREDICTED: F-box protein GID2-like [Cucumis melo] >KAA0064421.1 F-box protein GID2-like [Cucumis melo var. makuwa] >TYK20166.1 F-box protein GID2-like [Cucumis melo var. makuwa])

HSP 1 Score: 363 bits (931), Expect = 4.04e-126
Identity = 190/192 (98.96%), Postives = 190/192 (98.96%), Query Frame = 0


Query: 1   MKRVVSDGVGDRKMGKKPKAETQDFTRGGGGREDCSDKTGFMNLDDNLLFEVFKHVDART 60
           MKRVVSDGVGDRKMGKKPKAETQDFTRGGG  EDCSDKTGFMNLDDNLLFEVFKHVDART
Sbjct: 1   MKRVVSDGVGDRKMGKKPKAETQDFTRGGG--EDCSDKTGFMNLDDNLLFEVFKHVDART 60

Query: 61  LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120
           LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL
Sbjct: 61  LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120

Query: 121 TKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR 180
           TKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR
Sbjct: 121 TKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR 180

Query: 181 YYEKMNFSNRGR 192
           YYEKMNFSNRGR
Sbjct: 181 YYEKMNFSNRGR 190

[Close]

BLAST of MELO3C016791.jh1 vs. NCBI nr
Match: XP_011654137.1 (F-box protein GID2 [Cucumis sativus] >KGN55239.1 hypothetical protein Csa_012230 [Cucumis sativus])

HSP 1 Score: 355 bits (910), Expect = 6.42e-123
Identity = 188/192 (97.92%), Postives = 189/192 (98.44%), Query Frame = 0


Query: 1   MKRVVSDGVGDRKMGKKPKAETQDFTRGGGGREDCSDKTGFMNLDDNLLFEVFKHVDART 60
           MKRVV DGVGDRKMGKKPKAETQDFTRGGGG EDCSDKTGFMNLDDNLLFEVFKHVDART
Sbjct: 1   MKRVVPDGVGDRKMGKKPKAETQDFTRGGGG-EDCSDKTGFMNLDDNLLFEVFKHVDART 60

Query: 61  LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120
           LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL
Sbjct: 61  LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120

Query: 121 TKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR 180
           TKPQSSSSSSSSSS SS+SSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR
Sbjct: 121 TKPQSSSSSSSSSS-SSSSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR 180

Query: 181 YYEKMNFSNRGR 192
           YYEKMNFSNRGR
Sbjct: 181 YYEKMNFSNRGR 190

[Close]

BLAST of MELO3C016791.jh1 vs. NCBI nr
Match: XP_038900230.1 (F-box protein GID2 [Benincasa hispida])

HSP 1 Score: 322 bits (825), Expect = 4.55e-110
Identity = 172/191 (90.05%), Postives = 174/191 (91.10%), Query Frame = 0


Query: 1   MKRVVSDGVGDRKMGKKPKAETQDFTRGGGGREDCSDKTGFMNLDDNLLFEVFKHVDART 60
           MKRVV DG GDRK GKKP+AETQD   GG    D SD+TGFMNLDDNLLFEVFKHVDART
Sbjct: 1   MKRVVPDGDGDRKTGKKPRAETQDCAGGG----DPSDRTGFMNLDDNLLFEVFKHVDART 60

Query: 61  LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120
           LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL
Sbjct: 61  LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120

Query: 121 TKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR 180
           TKPQSSSSSSS      TSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR
Sbjct: 121 TKPQSSSSSSS------TSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR 180

Query: 181 YYEKMNFSNRG 191
           YYEKMNFSNRG
Sbjct: 181 YYEKMNFSNRG 181

[Close]

BLAST of MELO3C016791.jh1 vs. NCBI nr
Match: XP_023536623.1 (F-box protein GID2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 306 bits (784), Expect = 8.93e-104
Identity = 165/192 (85.94%), Postives = 174/192 (90.62%), Query Frame = 0


Query: 1   MKRVVSDGVGDRKMGKKPKAETQDFTRGGGGREDCSDKTGFMNLDDNLLFEVFKHVDART 60
           MKRVV +G GDRK  KKP+A + D   GG      SDKTGFMNLDDNLLFEVFKHVDA T
Sbjct: 1   MKRVVPEGKGDRKTEKKPRAVSHDCDGGG-----VSDKTGFMNLDDNLLFEVFKHVDATT 60

Query: 61  LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120
           LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL
Sbjct: 61  LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120

Query: 121 TKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR 180
           TKPQSSSSSSSSSS SS+S+S+S+SSS+ WSPFPAMIGSKPPARWGKDEVHLSLSLLSIR
Sbjct: 121 TKPQSSSSSSSSSS-SSSSTSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR 180

Query: 181 YYEKMNFSNRGR 192
           YYEKMNFS+RGR
Sbjct: 181 YYEKMNFSSRGR 186

[Close]

BLAST of MELO3C016791.jh1 vs. NCBI nr
Match: KAG6591404.1 (F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 305 bits (782), Expect = 1.68e-103
Identity = 168/192 (87.50%), Postives = 172/192 (89.58%), Query Frame = 0


Query: 1   MKRVVSDGVGDRKMGKKPKAETQDFTRGGGGREDCSDKTGFMNLDDNLLFEVFKHVDART 60
           MKRVV +G GDRK  KKP+A + D   GG      SDKTGFMNLDDNLLFEVFKHVDA T
Sbjct: 1   MKRVVPEGKGDRKTEKKPRAVSHDCDGGG-----VSDKTGFMNLDDNLLFEVFKHVDATT 60

Query: 61  LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120
           LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL
Sbjct: 61  LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120

Query: 121 TKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR 180
           TKPQSSSSSSSSSS SSTSSSASSSS   WSPFPAMIGSKPPARWGKDEVHLSLSLLSIR
Sbjct: 121 TKPQSSSSSSSSSS-SSTSSSASSSSP--WSPFPAMIGSKPPARWGKDEVHLSLSLLSIR 180

Query: 181 YYEKMNFSNRGR 192
           YYEKMNFS+RGR
Sbjct: 181 YYEKMNFSSRGR 184

[Close]

BLAST of MELO3C016791.jh1 vs. ExPASy Swiss-Prot
Match: Q9STX3 (F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 3.3e-45
Identity = 89/154 (57.79%), Postives = 106/154 (68.83%), Query Frame = 0


Query: 37  DKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGN 96
           ++ GF NLD+NL++EV KHVDA+TLAM++CVSK WHKTA+DERLWELICTRHW N GCG 
Sbjct: 28  EEIGFSNLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTAQDERLWELICTRHWTNIGCGQ 87

Query: 97  QQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAM 156
            QLRSVVLALGGFRRLHSL++WPL+KP                                 
Sbjct: 88  NQLRSVVLALGGFRRLHSLYLWPLSKP--------------------------------- 145

Query: 157 IGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR 191
               P AR+GKDE+ L+LSLLSIRYYEKM+F+ R
Sbjct: 148 ---NPRARFGKDELKLTLSLLSIRYYEKMSFTKR 145

[Close]

BLAST of MELO3C016791.jh1 vs. ExPASy Swiss-Prot
Match: Q7XAK4 (F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.7e-25
Identity = 64/146 (43.84%), Postives = 85/146 (58.22%), Query Frame = 0


Query: 43  NLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV 102
           +L ++L+FEV +  +ARTLA AACVS+ W + AEDERLWE  C R WAN G   +QLR+V
Sbjct: 75  DLGEDLVFEVLRRAEARTLAAAACVSRGWRQLAEDERLWEAACVREWANLGFSERQLRAV 134

Query: 103 VLALGGFRRLHSLFIWPLTKPQSSSSSSSSSSPSSTSSSASSSSSASW--SPFPAMIGSK 162
           VL+LGGFRRLH+++I PL                             W  +  P   G +
Sbjct: 135 VLSLGGFRRLHAVYIRPL----------------------------QWRGAGVPRQQGRR 192

Query: 163 -PPARWGKDEVHLSLSLLSIRYYEKM 186
            PP R G+D+V LSLSL SI +++ M
Sbjct: 195 QPPVRLGRDQVQLSLSLFSIGFFQNM 192

[Close]

BLAST of MELO3C016791.jh1 vs. ExPASy Swiss-Prot
Match: Q9LUB6 (F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.2e-09
Identity = 40/144 (27.78%), Postives = 64/144 (44.44%), Query Frame = 0


Query: 42  MNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS 101
           +N   ++L E+ + +D  +L  AACV + W   A ++ +WE +C R  +     +  LRS
Sbjct: 28  INDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEELCFRQVSPR--PSLSLRS 87

Query: 102 VVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKP 161
           VV ALGG+R L+ L I P                                    ++   P
Sbjct: 88  VVSALGGYRCLYFLCIRP------------------------------------VLARLP 133

Query: 162 PARWGKDEVHLSLSLLSIRYYEKM 186
              W +D++ LSLSL  + YYE++
Sbjct: 148 KLLWTRDQLQLSLSLYCVHYYERL 133

[Close]

BLAST of MELO3C016791.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VFE5 (F-box protein GID2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002980 PE=4 SV=1)

HSP 1 Score: 363 bits (931), Expect = 1.95e-126
Identity = 190/192 (98.96%), Postives = 190/192 (98.96%), Query Frame = 0


Query: 1   MKRVVSDGVGDRKMGKKPKAETQDFTRGGGGREDCSDKTGFMNLDDNLLFEVFKHVDART 60
           MKRVVSDGVGDRKMGKKPKAETQDFTRGGG  EDCSDKTGFMNLDDNLLFEVFKHVDART
Sbjct: 1   MKRVVSDGVGDRKMGKKPKAETQDFTRGGG--EDCSDKTGFMNLDDNLLFEVFKHVDART 60

Query: 61  LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120
           LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL
Sbjct: 61  LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120

Query: 121 TKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR 180
           TKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR
Sbjct: 121 TKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR 180

Query: 181 YYEKMNFSNRGR 192
           YYEKMNFSNRGR
Sbjct: 181 YYEKMNFSNRGR 190

[Close]

BLAST of MELO3C016791.jh1 vs. ExPASy TrEMBL
Match: A0A1S3BV18 (F-box protein GID2-like OS=Cucumis melo OX=3656 GN=LOC103493580 PE=4 SV=1)

HSP 1 Score: 363 bits (931), Expect = 1.95e-126
Identity = 190/192 (98.96%), Postives = 190/192 (98.96%), Query Frame = 0


Query: 1   MKRVVSDGVGDRKMGKKPKAETQDFTRGGGGREDCSDKTGFMNLDDNLLFEVFKHVDART 60
           MKRVVSDGVGDRKMGKKPKAETQDFTRGGG  EDCSDKTGFMNLDDNLLFEVFKHVDART
Sbjct: 1   MKRVVSDGVGDRKMGKKPKAETQDFTRGGG--EDCSDKTGFMNLDDNLLFEVFKHVDART 60

Query: 61  LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120
           LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL
Sbjct: 61  LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120

Query: 121 TKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR 180
           TKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR
Sbjct: 121 TKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR 180

Query: 181 YYEKMNFSNRGR 192
           YYEKMNFSNRGR
Sbjct: 181 YYEKMNFSNRGR 190

[Close]

BLAST of MELO3C016791.jh1 vs. ExPASy TrEMBL
Match: A0A0A0L2H5 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G641710 PE=4 SV=1)

HSP 1 Score: 355 bits (910), Expect = 3.11e-123
Identity = 188/192 (97.92%), Postives = 189/192 (98.44%), Query Frame = 0


Query: 1   MKRVVSDGVGDRKMGKKPKAETQDFTRGGGGREDCSDKTGFMNLDDNLLFEVFKHVDART 60
           MKRVV DGVGDRKMGKKPKAETQDFTRGGGG EDCSDKTGFMNLDDNLLFEVFKHVDART
Sbjct: 1   MKRVVPDGVGDRKMGKKPKAETQDFTRGGGG-EDCSDKTGFMNLDDNLLFEVFKHVDART 60

Query: 61  LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120
           LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL
Sbjct: 61  LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120

Query: 121 TKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR 180
           TKPQSSSSSSSSSS SS+SSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR
Sbjct: 121 TKPQSSSSSSSSSS-SSSSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR 180

Query: 181 YYEKMNFSNRGR 192
           YYEKMNFSNRGR
Sbjct: 181 YYEKMNFSNRGR 190

[Close]

BLAST of MELO3C016791.jh1 vs. ExPASy TrEMBL
Match: A0A6J1FA22 (F-box protein GID2-like OS=Cucurbita moschata OX=3662 GN=LOC111443649 PE=4 SV=1)

HSP 1 Score: 300 bits (767), Expect = 1.23e-101
Identity = 162/192 (84.38%), Postives = 166/192 (86.46%), Query Frame = 0


Query: 1   MKRVVSDGVGDRKMGKKPKAETQDFTRGGGGREDCSDKTGFMNLDDNLLFEVFKHVDART 60
           MKRVV +G GDRK  KKP+A + D   GG      SDKTGFMNLDDNLLFEVFKHVDART
Sbjct: 1   MKRVVPEGKGDRKTEKKPRAVSHDCDGGG-----VSDKTGFMNLDDNLLFEVFKHVDART 60

Query: 61  LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120
           LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL
Sbjct: 61  LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120

Query: 121 TKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR 180
           TKPQSSSSS        TSSSASSSS   WSPFPAMIGSKPPARWGKDEVHLSLSLLSIR
Sbjct: 121 TKPQSSSSS--------TSSSASSSSP--WSPFPAMIGSKPPARWGKDEVHLSLSLLSIR 177

Query: 181 YYEKMNFSNRGR 192
           YYEKMNFS+RGR
Sbjct: 181 YYEKMNFSSRGR 177

[Close]

BLAST of MELO3C016791.jh1 vs. ExPASy TrEMBL
Match: A0A6J1ILD7 (F-box protein GID2-like OS=Cucurbita maxima OX=3661 GN=LOC111477283 PE=4 SV=1)

HSP 1 Score: 300 bits (767), Expect = 1.37e-101
Identity = 159/192 (82.81%), Postives = 168/192 (87.50%), Query Frame = 0


Query: 1   MKRVVSDGVGDRKMGKKPKAETQDFTRGGGGREDCSDKTGFMNLDDNLLFEVFKHVDART 60
           MKRVV +G GDRK  KKP+A + D   GG      SDKTGF+NLDDNLLFEVFKHVDART
Sbjct: 1   MKRVVPEGKGDRKTEKKPRAVSHDCDGGG-----VSDKTGFLNLDDNLLFEVFKHVDART 60

Query: 61  LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120
           LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL
Sbjct: 61  LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120

Query: 121 TKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR 180
           TKPQSSSSSSSS+S       +S+SSS+ WSPFPAMIGSKPPARWGKDEVHLSLSLLSIR
Sbjct: 121 TKPQSSSSSSSSTS-------SSTSSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR 180

Query: 181 YYEKMNFSNRGR 192
           YYEKMNF +RGR
Sbjct: 181 YYEKMNFGSRGR 180

[Close]

BLAST of MELO3C016791.jh1 vs. TAIR 10
Match: AT4G24210.1 (F-box family protein )

HSP 1 Score: 183.0 bits (463), Expect = 2.3e-46
Identity = 89/154 (57.79%), Postives = 106/154 (68.83%), Query Frame = 0


Query: 37  DKTGFMNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGN 96
           ++ GF NLD+NL++EV KHVDA+TLAM++CVSK WHKTA+DERLWELICTRHW N GCG 
Sbjct: 28  EEIGFSNLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTAQDERLWELICTRHWTNIGCGQ 87

Query: 97  QQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAM 156
            QLRSVVLALGGFRRLHSL++WPL+KP                                 
Sbjct: 88  NQLRSVVLALGGFRRLHSLYLWPLSKP--------------------------------- 145

Query: 157 IGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR 191
               P AR+GKDE+ L+LSLLSIRYYEKM+F+ R
Sbjct: 148 ---NPRARFGKDELKLTLSLLSIRYYEKMSFTKR 145

[Close]

BLAST of MELO3C016791.jh1 vs. TAIR 10
Match: AT5G48170.1 (F-box family protein )

HSP 1 Score: 63.9 bits (154), Expect = 1.6e-10
Identity = 40/144 (27.78%), Postives = 64/144 (44.44%), Query Frame = 0


Query: 42  MNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS 101
           +N   ++L E+ + +D  +L  AACV + W   A ++ +WE +C R  +     +  LRS
Sbjct: 28  INDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEELCFRQVSPR--PSLSLRS 87

Query: 102 VVLALGGFRRLHSLFIWPLTKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKP 161
           VV ALGG+R L+ L I P                                    ++   P
Sbjct: 88  VVSALGGYRCLYFLCIRP------------------------------------VLARLP 133

Query: 162 PARWGKDEVHLSLSLLSIRYYEKM 186
              W +D++ LSLSL  + YYE++
Sbjct: 148 KLLWTRDQLQLSLSLYCVHYYERL 133

[Close]

BLAST of MELO3C016791.jh1 vs. TAIR 10
Match: AT1G21760.1 (F-box protein 7 )

HSP 1 Score: 43.5 bits (101), Expect = 2.2e-04
Identity = 18/50 (36.00%), Postives = 24/50 (48.00%), Query Frame = 0


Query: 44  LDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTG 94
           L D LLFEVF  +    L  A+CV ++W  T  +   W   C + W   G
Sbjct: 62  LPDELLFEVFARMMPYDLGRASCVCRKWRYTVRNPMFWRNACLKAWQTAG 111

The following BLAST results are available for this feature:

BLAST of MELO3C016791.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008452610.1	4.04e-126	98.96	PREDICTED: F-box protein GID2-like [Cucumis melo] >KAA0064421.1 F-box protein GI...	[more]
XP_011654137.1	6.42e-123	97.92	F-box protein GID2 [Cucumis sativus] >KGN55239.1 hypothetical protein Csa_012230...	[more]
XP_038900230.1	4.55e-110	90.05	F-box protein GID2 [Benincasa hispida]	[more]
XP_023536623.1	8.93e-104	85.94	F-box protein GID2-like [Cucurbita pepo subsp. pepo]	[more]
KAG6591404.1	1.68e-103	87.50	F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of MELO3C016791.jh1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STX3	3.3e-45	57.79	F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1	[more]
Q7XAK4	1.7e-25	43.84	F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1	[more]
Q9LUB6	2.2e-09	27.78	F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1	[more]

BLAST of MELO3C016791.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VFE5	1.95e-126	98.96	F-box protein GID2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BV18	1.95e-126	98.96	F-box protein GID2-like OS=Cucumis melo OX=3656 GN=LOC103493580 PE=4 SV=1	[more]
A0A0A0L2H5	3.11e-123	97.92	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G641710 PE=4 ...	[more]
A0A6J1FA22	1.23e-101	84.38	F-box protein GID2-like OS=Cucurbita moschata OX=3662 GN=LOC111443649 PE=4 SV=1	[more]
A0A6J1ILD7	1.37e-101	82.81	F-box protein GID2-like OS=Cucurbita maxima OX=3661 GN=LOC111477283 PE=4 SV=1	[more]

BLAST of MELO3C016791.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24210.1	2.3e-46	57.79	F-box family protein	[more]
AT5G48170.1	1.6e-10	27.78	F-box family protein	[more]
AT1G21760.1	2.2e-04	36.00	F-box protein 7	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 44..84 e-value: 0.0054 score: 26.0
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 41..85 e-value: 1.5E-7 score: 31.0
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 38..84 score: 9.338503
None	No IPR available	GENE3D	1.20.1280.50		coord: 32..147 e-value: 3.1E-12 score: 48.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..152
None	No IPR available	PANTHER	PTHR12874:SF22	F-BOX PROTEIN GID2-LIKE	coord: 30..187
IPR045118	F-box only protein FBXO9/FBXO48	PANTHER	PTHR12874	F-BOX ONLY PROTEIN 48-RELATED	coord: 30..187
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 34..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C016791.jh1.t1	MELO3C016791.jh1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding