MELO3C016650 (gene) Melon (DHL92) v4

Overview
NameMELO3C016650
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionCondensin complex subunit 1
Locationchr06: 16918325 .. 16919781 (-)
RNA-Seq ExpressionMELO3C016650
SyntenyMELO3C016650
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATCCGCCGTTCGGACGTCCGTGCCCTATCGTTGTCCTTCCATCCCTGTCGTCATTTGTGCCCTATCATTTGAAGCAACTCTAGAGCAGTTAAGAAGAAACTATCAGATGTTATTAATTAGATCGACGTTCCTATAATGAGGTACAAGTTATAAGTTCGGTTCTTATAGATGGCATCTGAAAAGCTTGTGTTAATTGTTAACTGTTGCGAATTTACTGAGCCAATGCCAGATTCCCCACCAGTATGCCCCCATCGAGTAATGGCGCATTGATCTCCACCATTAGCATGGTGTGTCGGTTTCTAAAATGGAATGTATAAGAATTTTAAAAAGTGTATTTTGTTTTTGTTTTCCCCCCCTTTTCTTCGGACATCAACTTTATGGGATTTCTGTTGATGTCTTTTGCTTTAATGTTGGTTGAACAATAGTAGAGCAAAGATGGAGAGAAATTTTTGCTTTAATATATAAGAACTTAAAAAGAGTATTTTGTTTTTTGCTTTAATGTATATTCAATTCATCCATCCCCTGAAATCTTTGCAGCAAATTTGGTTAAAAATTCTCTTACTTCTGTTTTTAATGGTAATAAGGATGATGAACTGCAAGCTGACATTGATGGTGGAAATGAGGGACATATTAACTACTATCCACATGGATAAGCTTAGTAGATATTTAATTATCGCGAGTCATGTAGCCATGAACCAATTAGTGTACATCGAATTGTGCACCTGAAAAATTCAGAAACAAAAAGCGAAGGAAAAAACACTTGTTGATGGTTAGACTGGACACGGTAATGGTGGAACAGTAGCTAATGGTGAGAAGGTGAATTCTCCTTTTGTATAAGAATCGATTATGGGACTAGGATACAGTTGTCTATCTATTGTTTTGTTACTTGTTTTTTTTTTTGGAATATAAATTTTGACGTTTAAATTCTTGCAGGAAGATGGCATCAATGCTGAGCTAGCCTTGCTCCTTTTGAAGATGCAATTGTTGATTCTCTTTCAGAGAGGGCAGAAAAAGAAATTGTTTTTGGTAATTCAAGAGGGAAGAACTTAATAGGACACTGTGCACCATTTCTTTCCAAGCTTTGCAGGAATTTTAACTTGATGCATAAGGTGAATGTTTGTGATTTGTTTCATATCTATACAGCTATACTATAGGTTAATAGTTTATATTACCTTTTAAATTATTCAATTATTCGAGTCTTGTTATTATTTATTAAAAATAATTTACATTGTAAAAGTTGATATTATATTATAAACAAGATTAAATTGCCGATTAGTAATTAGAGTGTGCAAATATTCTTTTGCATTTTAGAACCAGTTACAGTAACCTTTTTCACTAGAAATTATGTACCAATGCATTAAAGAAATATGGTGTTGGTTCATGTGGTCCTCGTGGGTTTTATGGGACAACAGTAGTCTTCTTTATTGTTATAATATGTTGTTTTTATTAGGTAATT

mRNA sequence

CATCCGCCGTTCGGACGTCCGTGCCCTATCGTTGTCCTTCCATCCCTGTCGTCATTTGTGCCCTATCATTTGAAGCAACTCTAGAGCAGTTAAGAAGAAACTATCAGATGTTATTAATTAGATCGACGTTCCTATAATGAGGTACAAGTTATAAGTTCGGTTCTTATAGATGGCATCTGAAAAGCTTGTGTTAATTGTTAACTGTTGCGAATTTACTGAGCCCCCATCGAGTAATGGCGCATTGATCTCCACCATTAGCATGGTGTGTCGGTTTCTAAAATGGAATGTATAAGAATTTTAAAAAGTGTATTTTGTTTTTGTTTTCCCCCCCTTTTCTTCGGACATCAACTTTATGGGATTTCTGTTGATGTCTTTTGCTTTAATGTTGGTTGAACAATAGTAGAGCAAAGATGGAGAGAAATTTTTGCTTTAATATATAAGAACTTAAAAAGAGTATTTTGTTTTTTGCTTTAATGTATATTCAATTCATCCATCCCCTGAAATCTTTGCAGCAAATTTGGTTAAAAATTCTCTTACTTCTGTTTTTAATGGTAATAAGGATGATGAACTGCAAGCTGACATTGATGGTGGAAATGAGGGACATATTAACTACTATCCACATGGATAAGCTTAGTAGATATTTAATTATCGCGAGTCATGTAGCCATGAACCAATTAGTGTACATCGAATTGTGCACCTGAAAAATTCAGAAACAAAAAGCGAAGGAAAAAACACTTGTTGATGGTTAGACTGGACACGGTAATGGTGGAACAGTAGCTAATGGTGAGAAGGTGAATTCTCCTTTTGTATAAGAATCGATTATGGGACTAGGATACAGTTGTCTATCTATTGTTTTGTTACTTGTTTTTTTTTTTGGAATATAAATTTTGACGTTTAAATTCTTGCAGGAAGATGGCATCAATGCTGAGCTAGCCTTGCTCCTTTTGAAGATGCAATTGTTGATTCTCTTTCAGAGAGGGCAGAAAAAGAAATTGTTTTTGGTAATTCAAGAGGGAAGAACTTAATAGGACACTGTGCACCATTTCTTTCCAAGCTTTGCAGGAATTTTAACTTGATGCATAAGGTGAATGTTTGTGATTTGTTTCATATCTATACAGCTATACTATAGGTTAATAGTTTATATTACCTTTTAAATTATTCAATTATTCGAGTCTTGTTATTATTTATTAAAAATAATTTACATTGTAAAAGTTGATATTATATTATAAACAAGATTAAATTGCCGATTAGTAATTAGAGTGTGCAAATATTCTTTTGCATTTTAGAACCAGTTACAGTAACCTTTTTCACTAGAAATTATGTACCAATGCATTAAAGAAATATGGTGTTGGTTCATGTGGTCCTCGTGGGTTTTATGGGACAACAGTAGTCTTCTTTATTGTTATAATATGTTGTTTTTATTAGGTAATT

Coding sequence (CDS)

ATGTATATTCAATTCATCCATCCCCTGAAATCTTTGCAGCAAATTTGGTTAAAAATTCTCTTACTTCTGTTTTTAATGGTAATAAGGATGATGAACTGCAAGCTGACATTGATGGTGGAAATGAGGGACATATTAACTACTATCCACATGGATAAGCTTAGTAGATATTTAATTATCGCGAGTCATGTAGCCATGAACCAATTAGTGTACATCGAATTGTGCACCTGA

Protein sequence

MYIQFIHPLKSLQQIWLKILLLLFLMVIRMMNCKLTLMVEMRDILTTIHMDKLSRYLIIASHVAMNQLVYIELCT
Homology
[Close]
BLAST of MELO3C016650 vs. NCBI nr
Match: XP_004136646.1 (condensin complex subunit 1 [Cucumis sativus] >KGN59461.1 hypothetical protein Csa_001936 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 1.9e-06
Identity = 30/33 (90.91%), Postives = 32/33 (96.97%), Query Frame = 0 

Query: 43  DILTTIHMDKLSRYLIIASHVAMNQLVYIELCT 76
           DILTT+H+DKLSRYL IASHVAMNQLVYIELCT
Sbjct: 823 DILTTVHIDKLSRYLFIASHVAMNQLVYIELCT 855

[Close]
BLAST of MELO3C016650 vs. NCBI nr
Match: XP_008443280.1 (PREDICTED: condensin complex subunit 1 [Cucumis melo] >KAA0053868.1 condensin complex subunit 1 [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 1.6e-05
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 43  DILTTIHMDKLSRYLIIASHVAMNQLVYIELCT 76
           DILTT+ +DKLSRYL IASHVAMNQLVYIELCT
Sbjct: 822 DILTTVQIDKLSRYLFIASHVAMNQLVYIELCT 854

[Close]
BLAST of MELO3C016650 vs. NCBI nr
Match: XP_038904683.1 (condensin complex subunit 1 [Benincasa hispida] >XP_038904685.1 condensin complex subunit 1 [Benincasa hispida])

HSP 1 Score: 58.5 bits (140), Expect = 2.8e-05
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 43  DILTTIHMDKLSRYLIIASHVAMNQLVYIELCT 76
           DILTT+H++KLSRYL IASHVAMNQLVYIE CT
Sbjct: 823 DILTTVHIEKLSRYLFIASHVAMNQLVYIESCT 855

[Close]
BLAST of MELO3C016650 vs. NCBI nr
Match: XP_022935076.1 (condensin complex subunit 1 [Cucurbita moschata])

HSP 1 Score: 55.5 bits (132), Expect = 2.4e-04
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 43  DILTTIHMDKLSRYLIIASHVAMNQLVYIELCT 76
           DILTT+ ++KLSRYL IASHVAMNQLVYIE CT
Sbjct: 823 DILTTVQIEKLSRYLFIASHVAMNQLVYIESCT 855

[Close]
BLAST of MELO3C016650 vs. NCBI nr
Match: XP_022983683.1 (condensin complex subunit 1 [Cucurbita maxima])

HSP 1 Score: 55.5 bits (132), Expect = 2.4e-04
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 43  DILTTIHMDKLSRYLIIASHVAMNQLVYIELCT 76
           DILTT+ ++KLSRYL IASHVAMNQLVYIE CT
Sbjct: 823 DILTTVQIEKLSRYLFIASHVAMNQLVYIESCT 855

[Close]
BLAST of MELO3C016650 vs. ExPASy TrEMBL
Match: A0A0A0LHG7 (Condensin complex subunit 1 OS=Cucumis sativus OX=3659 GN=Csa_3G822130 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 9.4e-07
Identity = 30/33 (90.91%), Postives = 32/33 (96.97%), Query Frame = 0 

Query: 43  DILTTIHMDKLSRYLIIASHVAMNQLVYIELCT 76
           DILTT+H+DKLSRYL IASHVAMNQLVYIELCT
Sbjct: 823 DILTTVHIDKLSRYLFIASHVAMNQLVYIELCT 855

[Close]
BLAST of MELO3C016650 vs. ExPASy TrEMBL
Match: A0A5A7UFJ3 (Condensin complex subunit 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold135G002610 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.9e-06
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 43  DILTTIHMDKLSRYLIIASHVAMNQLVYIELCT 76
           DILTT+ +DKLSRYL IASHVAMNQLVYIELCT
Sbjct: 822 DILTTVQIDKLSRYLFIASHVAMNQLVYIELCT 854

[Close]
BLAST of MELO3C016650 vs. ExPASy TrEMBL
Match: A0A1S3B7M0 (Condensin complex subunit 1 OS=Cucumis melo OX=3656 GN=LOC103486899 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.9e-06
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 43  DILTTIHMDKLSRYLIIASHVAMNQLVYIELCT 76
           DILTT+ +DKLSRYL IASHVAMNQLVYIELCT
Sbjct: 822 DILTTVQIDKLSRYLFIASHVAMNQLVYIELCT 854

[Close]
BLAST of MELO3C016650 vs. ExPASy TrEMBL
Match: A0A6J1J8F1 (Condensin complex subunit 1 OS=Cucurbita maxima OX=3661 GN=LOC111482227 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.1e-04
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 43  DILTTIHMDKLSRYLIIASHVAMNQLVYIELCT 76
           DILTT+ ++KLSRYL IASHVAMNQLVYIE CT
Sbjct: 823 DILTTVQIEKLSRYLFIASHVAMNQLVYIESCT 855

[Close]
BLAST of MELO3C016650 vs. ExPASy TrEMBL
Match: A0A6J1F3J1 (Condensin complex subunit 1 OS=Cucurbita moschata OX=3662 GN=LOC111442053 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.1e-04
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 43  DILTTIHMDKLSRYLIIASHVAMNQLVYIELCT 76
           DILTT+ ++KLSRYL IASHVAMNQLVYIE CT
Sbjct: 823 DILTTVQIEKLSRYLFIASHVAMNQLVYIESCT 855

The following BLAST results are available for this feature:
BLAST of MELO3C016650 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004136646.11.9e-0690.91condensin complex subunit 1 [Cucumis sativus] >KGN59461.1 hypothetical protein C... [more]
XP_008443280.11.6e-0587.88PREDICTED: condensin complex subunit 1 [Cucumis melo] >KAA0053868.1 condensin co... [more]
XP_038904683.12.8e-0584.85condensin complex subunit 1 [Benincasa hispida] >XP_038904685.1 condensin comple... [more]
XP_022935076.12.4e-0481.82condensin complex subunit 1 [Cucurbita moschata][more]
XP_022983683.12.4e-0481.82condensin complex subunit 1 [Cucurbita maxima][more]
BLAST of MELO3C016650 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C016650 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LHG79.4e-0790.91Condensin complex subunit 1 OS=Cucumis sativus OX=3659 GN=Csa_3G822130 PE=3 SV=1[more]
A0A5A7UFJ37.9e-0687.88Condensin complex subunit 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A1S3B7M07.9e-0687.88Condensin complex subunit 1 OS=Cucumis melo OX=3656 GN=LOC103486899 PE=3 SV=1[more]
A0A6J1J8F11.1e-0481.82Condensin complex subunit 1 OS=Cucurbita maxima OX=3661 GN=LOC111482227 PE=3 SV=... [more]
A0A6J1F3J11.1e-0481.82Condensin complex subunit 1 OS=Cucurbita moschata OX=3662 GN=LOC111442053 PE=3 S... [more]
BLAST of MELO3C016650 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C016650.1MELO3C016650.1mRNA