MELO3C016611.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C016611.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionRetrotransposon protein
Locationchr06: 29291146 .. 29291498 (+)
RNA-Seq ExpressionMELO3C016611.jh1
SyntenyMELO3C016611.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAAGAAGTCTTAGATTACTGGGTTATGGTAAGAAAAATAATCTAAACATCACATTACTTGCGTAGTGTACATTTACTTCACAATTTTCCTATTAGTATTTTTAAGTGGTCCTATTTTTTATGCAGTTGTATCCTACAACGAAGGGGCTCCTTAACAAACCCTTTCCCTATTACAACGAACTTGCATATGATTTTGGACGCGATAGGGTAATGGGTTGCTTCGCTGAGACATTCGCTGACGTCGGGTCTAACGAGCCTACCAGATATGAGGGATTTGACATGCCTAATGGGAACGCCATGTACAGCCAGGGGATTGACGTGTCCCAGGAGAATGTACGCGCATTATGA

mRNA sequence

ATGGAGAAAGAAGTCTTAGATTACTGGGTTATGTTGTATCCTACAACGAAGGGGCTCCTTAACAAACCCTTTCCCTATTACAACGAACTTGCATATGATTTTGGACGCGATAGGGTAATGGGTTGCTTCGCTGAGACATTCGCTGACGTCGGGTCTAACGAGCCTACCAGATATGAGGGATTTGACATGCCTAATGGGAACGCCATGTACAGCCAGGGGATTGACGTGTCCCAGGAGAATGTACGCGCATTATGA

Coding sequence (CDS)

ATGGAGAAAGAAGTCTTAGATTACTGGGTTATGTTGTATCCTACAACGAAGGGGCTCCTTAACAAACCCTTTCCCTATTACAACGAACTTGCATATGATTTTGGACGCGATAGGGTAATGGGTTGCTTCGCTGAGACATTCGCTGACGTCGGGTCTAACGAGCCTACCAGATATGAGGGATTTGACATGCCTAATGGGAACGCCATGTACAGCCAGGGGATTGACGTGTCCCAGGAGAATGTACGCGCATTATGA

Protein sequence

MEKEVLDYWVMLYPTTKGLLNKPFPYYNELAYDFGRDRVMGCFAETFADVGSNEPTRYEGFDMPNGNAMYSQGIDVSQENVRAL
Homology
BLAST of MELO3C016611.jh1 vs. NCBI nr
Match: KAA0046997.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04785.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 172 bits (435), Expect = 1.11e-53
Identity = 79/84 (94.05%), Postives = 81/84 (96.43%), Query Frame = 0

Query: 1   MEKEVLDYWVMLYPTTKGLLNKPFPYYNELAYDFGRDRVMGCFAETFADVGSNEPTRYEG 60
           MEKEVLDYWVMLYPT KGLLNKPFPYYNELAY+FGRDRVMGCFAETF D+GSNEPTRYEG
Sbjct: 20  MEKEVLDYWVMLYPTAKGLLNKPFPYYNELAYEFGRDRVMGCFAETFTDIGSNEPTRYEG 79

Query: 61  FDMPNGNAMYSQGIDVSQENVRAL 84
           FDM NGNAMYSQGIDVSQENVRAL
Sbjct: 80  FDMLNGNAMYSQGIDVSQENVRAL 103

BLAST of MELO3C016611.jh1 vs. NCBI nr
Match: KAA0051922.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK12240.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (285), Expect = 4.75e-30
Identity = 54/75 (72.00%), Postives = 63/75 (84.00%), Query Frame = 0

Query: 13 YPTTKGLLNKPFPYYNELAYDFGRDRVMGCFAETFADVGSNEPTRYEGFDMPNGN----A 72
          +PTT GLLNKPFPYYNELAY FGR+RV G F ETF DVGSNEP  Y+GFDMP+GN    +
Sbjct: 9  HPTTNGLLNKPFPYYNELAYVFGRNRVNGRFVETFVDVGSNEPAGYDGFDMPDGNEQFSS 68

Query: 73 MYSQGIDVSQENVRA 83
          +Y+QGID+SQE+VRA
Sbjct: 69 VYNQGIDMSQEDVRA 83

BLAST of MELO3C016611.jh1 vs. NCBI nr
Match: TYJ97579.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 115 bits (287), Expect = 9.61e-30
Identity = 56/87 (64.37%), Postives = 67/87 (77.01%), Query Frame = 0

Query: 2   EKEVLDYWVMLYPTTKGLLNKPFPYYNELAYDFGRDRVMGCFAETFADVGSNEPT-RYEG 61
           EKE+ D WV  +P  KGL+NKPFPYY+EL Y FGR+R  G FAETFADVGSNEP  RY+ 
Sbjct: 21  EKELFDNWVRSHPAAKGLMNKPFPYYDELTYVFGRNRATGRFAETFADVGSNEPDGRYDR 80

Query: 62  FDMPNGNA----MYSQGIDVSQENVRA 83
           FDM +GN     +YSQG+D+SQ+NVRA
Sbjct: 81  FDMGDGNEDFPPVYSQGVDISQDNVRA 107

BLAST of MELO3C016611.jh1 vs. NCBI nr
Match: KAA0060332.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22081.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 117 bits (293), Expect = 9.63e-30
Identity = 57/87 (65.52%), Postives = 67/87 (77.01%), Query Frame = 0

Query: 1   MEKEVLDYWVMLYPTTKGLLNKPFPYYNELAYDFGRDRVMGCFAETFADVGSNEPTRYEG 60
           +EKE+ D WV  +P  K LLNKPFPYY+EL Y F RDR MG FA+TFADVGSNEP  YEG
Sbjct: 111 LEKELFDNWVRSHPAAKTLLNKPFPYYDELTYVFDRDRAMGPFAKTFADVGSNEPGGYEG 170

Query: 61  FDMPNGNA----MYSQGIDVSQENVRA 83
           FDM +GN     +YSQGID+SQ++VRA
Sbjct: 171 FDMTDGNEEFPPVYSQGIDMSQDDVRA 197

BLAST of MELO3C016611.jh1 vs. NCBI nr
Match: KAA0065477.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (281), Expect = 3.67e-29
Identity = 56/87 (64.37%), Postives = 66/87 (75.86%), Query Frame = 0

Query: 2   EKEVLDYWVMLYPTTKGLLNKPFPYYNELAYDFGRDRVMGCFAETFADVGSNEPTR-YEG 61
           EKE+ D WV  +P  KGLLNKPFPYY+EL Y FGRDR  G FAETFADVGSNEP   Y+ 
Sbjct: 80  EKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDR 139

Query: 62  FDMPNGNA----MYSQGIDVSQENVRA 83
           FDM +GN     +YSQG+D+SQ++VRA
Sbjct: 140 FDMGDGNEDFQPVYSQGVDISQDDVRA 166

BLAST of MELO3C016611.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TYJ9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G001050 PE=4 SV=1)

HSP 1 Score: 172 bits (435), Expect = 5.39e-54
Identity = 79/84 (94.05%), Postives = 81/84 (96.43%), Query Frame = 0

Query: 1   MEKEVLDYWVMLYPTTKGLLNKPFPYYNELAYDFGRDRVMGCFAETFADVGSNEPTRYEG 60
           MEKEVLDYWVMLYPT KGLLNKPFPYYNELAY+FGRDRVMGCFAETF D+GSNEPTRYEG
Sbjct: 20  MEKEVLDYWVMLYPTAKGLLNKPFPYYNELAYEFGRDRVMGCFAETFTDIGSNEPTRYEG 79

Query: 61  FDMPNGNAMYSQGIDVSQENVRAL 84
           FDM NGNAMYSQGIDVSQENVRAL
Sbjct: 80  FDMLNGNAMYSQGIDVSQENVRAL 103

BLAST of MELO3C016611.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CLE8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00480 PE=4 SV=1)

HSP 1 Score: 114 bits (285), Expect = 2.30e-30
Identity = 54/75 (72.00%), Postives = 63/75 (84.00%), Query Frame = 0

Query: 13 YPTTKGLLNKPFPYYNELAYDFGRDRVMGCFAETFADVGSNEPTRYEGFDMPNGN----A 72
          +PTT GLLNKPFPYYNELAY FGR+RV G F ETF DVGSNEP  Y+GFDMP+GN    +
Sbjct: 9  HPTTNGLLNKPFPYYNELAYVFGRNRVNGRFVETFVDVGSNEPAGYDGFDMPDGNEQFSS 68

Query: 73 MYSQGIDVSQENVRA 83
          +Y+QGID+SQE+VRA
Sbjct: 69 VYNQGIDMSQEDVRA 83

BLAST of MELO3C016611.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BEV4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold9153G00010 PE=4 SV=1)

HSP 1 Score: 115 bits (287), Expect = 4.65e-30
Identity = 56/87 (64.37%), Postives = 67/87 (77.01%), Query Frame = 0

Query: 2   EKEVLDYWVMLYPTTKGLLNKPFPYYNELAYDFGRDRVMGCFAETFADVGSNEPT-RYEG 61
           EKE+ D WV  +P  KGL+NKPFPYY+EL Y FGR+R  G FAETFADVGSNEP  RY+ 
Sbjct: 21  EKELFDNWVRSHPAAKGLMNKPFPYYDELTYVFGRNRATGRFAETFADVGSNEPDGRYDR 80

Query: 62  FDMPNGNA----MYSQGIDVSQENVRA 83
           FDM +GN     +YSQG+D+SQ+NVRA
Sbjct: 81  FDMGDGNEDFPPVYSQGVDISQDNVRA 107

BLAST of MELO3C016611.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UWV7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G00660 PE=4 SV=1)

HSP 1 Score: 117 bits (293), Expect = 4.66e-30
Identity = 57/87 (65.52%), Postives = 67/87 (77.01%), Query Frame = 0

Query: 1   MEKEVLDYWVMLYPTTKGLLNKPFPYYNELAYDFGRDRVMGCFAETFADVGSNEPTRYEG 60
           +EKE+ D WV  +P  K LLNKPFPYY+EL Y F RDR MG FA+TFADVGSNEP  YEG
Sbjct: 111 LEKELFDNWVRSHPAAKTLLNKPFPYYDELTYVFDRDRAMGPFAKTFADVGSNEPGGYEG 170

Query: 61  FDMPNGNA----MYSQGIDVSQENVRA 83
           FDM +GN     +YSQGID+SQ++VRA
Sbjct: 171 FDMTDGNEEFPPVYSQGIDMSQDDVRA 197

BLAST of MELO3C016611.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VEG7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G001760 PE=4 SV=1)

HSP 1 Score: 112 bits (281), Expect = 1.77e-29
Identity = 56/87 (64.37%), Postives = 66/87 (75.86%), Query Frame = 0

Query: 2   EKEVLDYWVMLYPTTKGLLNKPFPYYNELAYDFGRDRVMGCFAETFADVGSNEPTR-YEG 61
           EKE+ D WV  +P  KGLLNKPFPYY+EL Y FGRDR  G FAETFADVGSNEP   Y+ 
Sbjct: 80  EKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDR 139

Query: 62  FDMPNGNA----MYSQGIDVSQENVRA 83
           FDM +GN     +YSQG+D+SQ++VRA
Sbjct: 140 FDMGDGNEDFQPVYSQGVDISQDDVRA 166

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0046997.11.11e-5394.05retrotransposon protein [Cucumis melo var. makuwa] >TYK04785.1 retrotransposon p... [more]
KAA0051922.14.75e-3072.00retrotransposon protein [Cucumis melo var. makuwa] >TYK12240.1 retrotransposon p... [more]
TYJ97579.19.61e-3064.37retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0060332.19.63e-3065.52retrotransposon protein [Cucumis melo var. makuwa] >TYK22081.1 retrotransposon p... [more]
KAA0065477.13.67e-2964.37retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TYJ95.39e-5494.05Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CLE82.30e-3072.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BEV44.65e-3064.37Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UWV74.66e-3065.52Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VEG71.77e-2964.37Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C016611.jh1.t1MELO3C016611.jh1.t1mRNA