MELO3C016548 (gene) Melon (DHL92) v4

Overview
NameMELO3C016548
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionFlocculation protein FLO11-like
Locationchr06: 26127649 .. 26128005 (+)
RNA-Seq ExpressionMELO3C016548
SyntenyMELO3C016548
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGTCGTAGACTTAGAGTCATCTGATGATGACAATGTAGTCTTGTACGATGTTTTGAACAGAAAGGTCATTTCTAAGGTTTCTTTCACTAAGGAGAGTAGTCTCAAACGCTCTAAGAAGCCTAGGTTTGCAAGACCGTTGAATGCTGATAAACTCTATGAGGAGTTGTTTAGTACTTCTTCCTCTGGTCATGAGGTTCCTTCCTCTAGCAAGGTTCCCTTTACTTATGCCCCGACATATACTCCTTCATCGTCTAAAGCTCCTTCTTCAGTTGAAGAGACCATTGAAGATTTATTTGCTGAGTTTCATCGTCTAAACCTAGTTTTGAGTCTGTCACGTCTCCAACTTCTATAA

mRNA sequence

ATGATTGTCGTAGACTTAGAGTCATCTGATGATGACAATGTAGTCTTGTACGATGTTTTGAACAGAAAGGTCATTTCTAAGGTTTCTTTCACTAAGGAGAGTAGTCTCAAACGCTCTAAGAAGCCTAGGTTTGCAAGACCGTTGAATGCTGATAAACTCTATGAGGAGTTGTTTAGTACTTCTTCCTCTGGTCATGAGGTTCCTTCCTCTAGCAAGGTTCCCTTTACTTATGCCCCGACATATACTCCTTCATCGTCTAAAGCTCCTTCTTCAGTTGAAGAGACCATTGAAGATTTATTTGCTGAGTTTCATCGTCTAAACCTAGTTTTGAGTCTGTCACGTCTCCAACTTCTATAA

Coding sequence (CDS)

ATGATTGTCGTAGACTTAGAGTCATCTGATGATGACAATGTAGTCTTGTACGATGTTTTGAACAGAAAGGTCATTTCTAAGGTTTCTTTCACTAAGGAGAGTAGTCTCAAACGCTCTAAGAAGCCTAGGTTTGCAAGACCGTTGAATGCTGATAAACTCTATGAGGAGTTGTTTAGTACTTCTTCCTCTGGTCATGAGGTTCCTTCCTCTAGCAAGGTTCCCTTTACTTATGCCCCGACATATACTCCTTCATCGTCTAAAGCTCCTTCTTCAGTTGAAGAGACCATTGAAGATTTATTTGCTGAGTTTCATCGTCTAAACCTAGTTTTGAGTCTGTCACGTCTCCAACTTCTATAA

Protein sequence

MIVVDLESSDDDNVVLYDVLNRKVISKVSFTKESSLKRSKKPRFARPLNADKLYEELFSTSSSGHEVPSSSKVPFTYAPTYTPSSSKAPSSVEETIEDLFAEFHRLNLVLSLSRLQLL
Homology
[Close]
BLAST of MELO3C016548 vs. NCBI nr
Match: KAA0051667.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-12
Identity = 51/102 (50.00%), Postives = 64/102 (62.75%), Query Frame = 0 

Query: 2   IVVDLESSDDDNVVLYDVLNRKVISKVSFTKESSLKRSKKPRFARPLNADKLYEELFSTS 61
           IVVD ES D+DNVVL  VL RK  +     K  + +R KKP+  RP N ++LYE+LF T 
Sbjct: 102 IVVDSESFDEDNVVLSHVLKRKATAIAPCAKGDTPERPKKPKTTRPTNVEELYEKLFGTP 161

Query: 62  SSGHEVPSSSKVPFTYAPTYTPSSSKAPSSVEETIEDLFAEF 104
            S HE PSS K P       T SSSK P + +ETI++LFA+F
Sbjct: 162 ISSHEAPSSGKHP----SKSTLSSSKIPPTTDETIDNLFAKF 199

[Close]
BLAST of MELO3C016548 vs. NCBI nr
Match: TYJ97943.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-12
Identity = 51/102 (50.00%), Postives = 64/102 (62.75%), Query Frame = 0 

Query: 2   IVVDLESSDDDNVVLYDVLNRKVISKVSFTKESSLKRSKKPRFARPLNADKLYEELFSTS 61
           IVVD ES D+DNVVL  VL RK  +     K  + +R KKP+  RP N ++LYE+LF T 
Sbjct: 102 IVVDSESFDEDNVVLSHVLKRKATAIAPCAKGDTPERPKKPKTTRPTNVEELYEKLFGTP 161

Query: 62  SSGHEVPSSSKVPFTYAPTYTPSSSKAPSSVEETIEDLFAEF 104
            S HE PSS K P       T SSSK P + +ETI++LFA+F
Sbjct: 162 ISSHEAPSSGKHP----SKSTLSSSKIPPTTDETIDNLFAKF 199

[Close]
BLAST of MELO3C016548 vs. NCBI nr
Match: KAA0032272.1 (uncharacterized protein E6C27_scaffold219G001100 [Cucumis melo var. makuwa] >TYK17076.1 uncharacterized protein E5676_scaffold1327G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 4.5e-10
Identity = 43/79 (54.43%), Postives = 52/79 (65.82%), Query Frame = 0 

Query: 1   MIVVDLESSDDDNVVLYDVLNRKVISKVSFTKESSLKRSKKPRFARPLNADKLYEELFST 60
           ++  + ESS+DDNVVL +VL RK  SK    KES    SKKP   R  NA++LYEELF  
Sbjct: 56  IVAAESESSEDDNVVLSNVLKRKASSKAPICKESVSDLSKKPGVGRSSNANELYEELFGI 115

Query: 61  SSSGHEVPSSSKVPFTYAP 80
           SS GH+  S+SKV  TYAP
Sbjct: 116 SSLGHKASSASKVQNTYAP 134

[Close]
BLAST of MELO3C016548 vs. NCBI nr
Match: KAA0043039.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 2.9e-09
Identity = 48/103 (46.60%), Postives = 60/103 (58.25%), Query Frame = 0 

Query: 2   IVVDLESSDDDNVVLYDVLNRKVISKVSFTKESSLKRSKKPRFARPLNADKLYEELFSTS 61
           +VV+ + S+DDNVVL DV+  KV  K S  KE     SK PR  R  NADKLY+ELF   
Sbjct: 54  VVVNSKLSNDDNVVLSDVMKWKVSDKASICKEGVSDLSKNPRVRRSSNADKLYKELFGIP 113

Query: 62  SSGHEVPSSSKVPFTYAPTYTPSSSKAPSSVEETIEDLFAEFH 105
             GH+   + K   T A     SSSK   S +ETI+DLF +F+
Sbjct: 114 PLGHKASFTCKAHNTSA----SSSSKPALSNDETIKDLFTKFY 152

[Close]
BLAST of MELO3C016548 vs. NCBI nr
Match: KAA0036860.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa] >TYJ95924.1 flocculation protein FLO11-like [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 2.1e-07
Identity = 46/111 (41.44%), Postives = 67/111 (60.36%), Query Frame = 0 

Query: 4   VDLESSDDDNVVLYDVLNRKVISKVSFTKESSLKRSKKPRFARPLNADKLYEELFSTSSS 63
           +D  S D+D+V+L +VL RK  ++ S +K+SSL + K  + A+P  A +LYEELF T  S
Sbjct: 55  IDSNSFDEDHVLLSEVLKRKTNTQASTSKQSSLVKLKNRKVAKPSIAIELYEELFGTPPS 114

Query: 64  GHEVPSSSKVPFTYAPTYTPSSSKAPSSVEETIEDLFAEFHRLNLVLSLSR 115
            H   SS      Y P +   S KA   +++T+E+LF EF+R  L +S SR
Sbjct: 115 DHRNSSSR----PYPPIFASFSFKAKHYLDKTMENLFDEFYRA-LEVSYSR 160

[Close]
BLAST of MELO3C016548 vs. ExPASy TrEMBL
Match: A0A5A7UBA4 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G00390 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 6.2e-13
Identity = 51/102 (50.00%), Postives = 64/102 (62.75%), Query Frame = 0 

Query: 2   IVVDLESSDDDNVVLYDVLNRKVISKVSFTKESSLKRSKKPRFARPLNADKLYEELFSTS 61
           IVVD ES D+DNVVL  VL RK  +     K  + +R KKP+  RP N ++LYE+LF T 
Sbjct: 102 IVVDSESFDEDNVVLSHVLKRKATAIAPCAKGDTPERPKKPKTTRPTNVEELYEKLFGTP 161

Query: 62  SSGHEVPSSSKVPFTYAPTYTPSSSKAPSSVEETIEDLFAEF 104
            S HE PSS K P       T SSSK P + +ETI++LFA+F
Sbjct: 162 ISSHEAPSSGKHP----SKSTLSSSKIPPTTDETIDNLFAKF 199

[Close]
BLAST of MELO3C016548 vs. ExPASy TrEMBL
Match: A0A5D3BFA1 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold234G00410 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 6.2e-13
Identity = 51/102 (50.00%), Postives = 64/102 (62.75%), Query Frame = 0 

Query: 2   IVVDLESSDDDNVVLYDVLNRKVISKVSFTKESSLKRSKKPRFARPLNADKLYEELFSTS 61
           IVVD ES D+DNVVL  VL RK  +     K  + +R KKP+  RP N ++LYE+LF T 
Sbjct: 102 IVVDSESFDEDNVVLSHVLKRKATAIAPCAKGDTPERPKKPKTTRPTNVEELYEKLFGTP 161

Query: 62  SSGHEVPSSSKVPFTYAPTYTPSSSKAPSSVEETIEDLFAEF 104
            S HE PSS K P       T SSSK P + +ETI++LFA+F
Sbjct: 162 ISSHEAPSSGKHP----SKSTLSSSKIPPTTDETIDNLFAKF 199

[Close]
BLAST of MELO3C016548 vs. ExPASy TrEMBL
Match: A0A5D3D2R5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1327G00250 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.2e-10
Identity = 43/79 (54.43%), Postives = 52/79 (65.82%), Query Frame = 0 

Query: 1   MIVVDLESSDDDNVVLYDVLNRKVISKVSFTKESSLKRSKKPRFARPLNADKLYEELFST 60
           ++  + ESS+DDNVVL +VL RK  SK    KES    SKKP   R  NA++LYEELF  
Sbjct: 56  IVAAESESSEDDNVVLSNVLKRKASSKAPICKESVSDLSKKPGVGRSSNANELYEELFGI 115

Query: 61  SSSGHEVPSSSKVPFTYAP 80
           SS GH+  S+SKV  TYAP
Sbjct: 116 SSLGHKASSASKVQNTYAP 134

[Close]
BLAST of MELO3C016548 vs. ExPASy TrEMBL
Match: A0A5A7TP88 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold75G001210 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.4e-09
Identity = 48/103 (46.60%), Postives = 60/103 (58.25%), Query Frame = 0 

Query: 2   IVVDLESSDDDNVVLYDVLNRKVISKVSFTKESSLKRSKKPRFARPLNADKLYEELFSTS 61
           +VV+ + S+DDNVVL DV+  KV  K S  KE     SK PR  R  NADKLY+ELF   
Sbjct: 54  VVVNSKLSNDDNVVLSDVMKWKVSDKASICKEGVSDLSKNPRVRRSSNADKLYKELFGIP 113

Query: 62  SSGHEVPSSSKVPFTYAPTYTPSSSKAPSSVEETIEDLFAEFH 105
             GH+   + K   T A     SSSK   S +ETI+DLF +F+
Sbjct: 114 PLGHKASFTCKAHNTSA----SSSSKPALSNDETIKDLFTKFY 152

[Close]
BLAST of MELO3C016548 vs. ExPASy TrEMBL
Match: A0A5D3BAD6 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G002360 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.0e-07
Identity = 46/111 (41.44%), Postives = 67/111 (60.36%), Query Frame = 0 

Query: 4   VDLESSDDDNVVLYDVLNRKVISKVSFTKESSLKRSKKPRFARPLNADKLYEELFSTSSS 63
           +D  S D+D+V+L +VL RK  ++ S +K+SSL + K  + A+P  A +LYEELF T  S
Sbjct: 55  IDSNSFDEDHVLLSEVLKRKTNTQASTSKQSSLVKLKNRKVAKPSIAIELYEELFGTPPS 114

Query: 64  GHEVPSSSKVPFTYAPTYTPSSSKAPSSVEETIEDLFAEFHRLNLVLSLSR 115
            H   SS      Y P +   S KA   +++T+E+LF EF+R  L +S SR
Sbjct: 115 DHRNSSSR----PYPPIFASFSFKAKHYLDKTMENLFDEFYRA-LEVSYSR 160

The following BLAST results are available for this feature:
BLAST of MELO3C016548 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0051667.11.3e-1250.00flocculation protein FLO11-like [Cucumis melo var. makuwa][more]
TYJ97943.11.3e-1250.00flocculation protein FLO11-like [Cucumis melo var. makuwa][more]
KAA0032272.14.5e-1054.43uncharacterized protein E6C27_scaffold219G001100 [Cucumis melo var. makuwa] >TYK... [more]
KAA0043039.12.9e-0946.60flocculation protein FLO11-like [Cucumis melo var. makuwa][more]
KAA0036860.12.1e-0741.44flocculation protein FLO11-like [Cucumis melo var. makuwa] >TYJ95924.1 flocculat... [more]
BLAST of MELO3C016548 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C016548 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UBA46.2e-1350.00Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5D3BFA16.2e-1350.00Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5D3D2R52.2e-1054.43Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TP881.4e-0946.60Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5D3BAD61.0e-0741.44Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
BLAST of MELO3C016548 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C016548.1MELO3C016548.1mRNA