MELO3C016539 (gene) Melon (DHL92) v4

Overview


Name	MELO3C016539
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	protein RALF-like 30
Location	chr06: 26336442 .. 26336838 (-)
RNA-Seq Expression	MELO3C016539
Synteny	MELO3C016539

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAGTCATCGAACGACAATACAAAAAAACCATAAGAAGATCTCGTGAAAACAAAGAAAAAACATGAAGTCGTGGTTGATATGTCTGGCCTTAATAGGCATGTTGGTCGTCGGTCAAGAAGTAACAGCAGAGACAAAACATCTTAAATTTCTGGATCCTTGCAATCAACCTTCTCCACCTCCAACTTGTTCTAAAACGGAAAAAAGGGAGGAGGCAAACTCGTACGATAGAGGTTGCTCTGCAATCAATCGATGTCGTGGGGGATGAAGCATAAATATATTCAAAAACATGATTTGACTCAAAATGTGTAAACGAGGAGAATTGTTTGTTAATGGAATGTGAATGATAAGATATACCAATAATGCAAAAACATTTCAAGGAAATAAAAGGATAAGTT

mRNA sequence

AGAAGTCATCGAACGACAATACAAAAAAACCATAAGAAGATCTCGTGAAAACAAAGAAAAAACATGAAGTCGTGGTTGATATGTCTGGCCTTAATAGGCATGTTGGTCGTCGGTCAAGAAGTAACAGCAGAGACAAAACATCTTAAATTTCTGGATCCTTGCAATCAACCTTCTCCACCTCCAACTTGTTCTAAAACGGAAAAAAGGGAGGAGGCAAACTCGTACGATAGAGGTTGCTCTGCAATCAATCGATGTCGTGGGGGATGAAGCATAAATATATTCAAAAACATGATTTGACTCAAAATGTGTAAACGAGGAGAATTGTTTGTTAATGGAATGTGAATGATAAGATATACCAATAATGCAAAAACATTTCAAGGAAATAAAAGGATAAGTT

Coding sequence (CDS)

ATGAAGTCGTGGTTGATATGTCTGGCCTTAATAGGCATGTTGGTCGTCGGTCAAGAAGTAACAGCAGAGACAAAACATCTTAAATTTCTGGATCCTTGCAATCAACCTTCTCCACCTCCAACTTGTTCTAAAACGGAAAAAAGGGAGGAGGCAAACTCGTACGATAGAGGTTGCTCTGCAATCAATCGATGTCGTGGGGGATGA

Protein sequence

MKSWLICLALIGMLVVGQEVTAETKHLKFLDPCNQPSPPPTCSKTEKREEANSYDRGCSAINRCRGG

Homology

[Close]

BLAST of MELO3C016539 vs. NCBI nr
Match: XP_038877580.1 (protein RALF-like 11 [Benincasa hispida])

HSP 1 Score: 105.1 bits (261), Expect = 2.3e-19
Identity = 47/67 (70.15%), Postives = 57/67 (85.07%), Query Frame = 0


Query: 1  MKSWLICLALIGMLVVGQEVTAETKHLKFLDPCNQPSPPPTCSKTEKREEANSYDRGCSA 60
          MKSWLIC+  I MLVVG  V AE K+L+FLDPCNQP+PPPTCS+ +++ EAN Y+RGCSA
Sbjct: 1  MKSWLICVVFISMLVVGPGVAAEKKYLQFLDPCNQPNPPPTCSEVKEQVEANPYNRGCSA 60

Query: 61 INRCRGG 68
          I+RCRGG
Sbjct: 61 IHRCRGG 67

[Close]

BLAST of MELO3C016539 vs. NCBI nr
Match: KAE8651825.1 (hypothetical protein Csa_006496, partial [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 2.0e-18
Identity = 47/63 (74.60%), Postives = 53/63 (84.13%), Query Frame = 0


Query: 1  MKSWLICLALIGMLVVGQEVTAETKHLKFLDPCNQPSPPPTCSKTEKREEANSYDRGCSA 60
          MKSWLICLALIGMLVVGQEV AETK+LKF+DPCNQPSPPPTC   +K EEAN Y+RG   
Sbjct: 1  MKSWLICLALIGMLVVGQEVAAETKYLKFIDPCNQPSPPPTCPNRDKVEEANPYNRGMLV 60

Query: 61 INR 64
          + +
Sbjct: 61 VGQ 63

[Close]

BLAST of MELO3C016539 vs. NCBI nr
Match: KAE8651824.1 (hypothetical protein Csa_006092, partial [Cucumis sativus])

HSP 1 Score: 101.7 bits (252), Expect = 2.6e-18
Identity = 47/56 (83.93%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 1  MKSWLICLALIGMLVVGQEVTAETKHLKFLDPCNQPSPPPTCSKTEKREEANSYDR 57
          MKSWLICLALI MLVVGQEV AETKHLKF+DPCNQPSPPPTC K +K EEAN Y+R
Sbjct: 1  MKSWLICLALISMLVVGQEVAAETKHLKFIDPCNQPSPPPTCPKRDKVEEANPYNR 56

[Close]

BLAST of MELO3C016539 vs. NCBI nr
Match: XP_016900883.1 (PREDICTED: protein RALF-like 30 [Cucumis melo])

HSP 1 Score: 95.1 bits (235), Expect = 2.4e-16
Identity = 45/67 (67.16%), Postives = 52/67 (77.61%), Query Frame = 0


Query: 1  MKSWLICLALIGMLVVGQEVTAETKHLKFLDPCNQPSPPPTCSKTEKREEANSYDRGCSA 60
          MKSWLIC AL+ MLV+G EV A+TK LKFLDPC QPSPP +C K E+ +   +YDRGCS 
Sbjct: 1  MKSWLICFALLSMLVMGHEVAAKTKFLKFLDPCLQPSPPRSCYKHERVDSPIAYDRGCSP 60

Query: 61 INRCRGG 68
          I RCRGG
Sbjct: 61 ILRCRGG 67

[Close]

BLAST of MELO3C016539 vs. NCBI nr
Match: KAE8637268.1 (hypothetical protein CSA_017684 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 2.7e-15
Identity = 43/67 (64.18%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 1  MKSWLICLALIGMLVVGQEVTAETKHLKFLDPCNQPSPPPTC-SKTEKREEANSYDRGCS 60
          MKSWLIC+  I MLV+ QEV A+T HLKF +PC+ PSPPP+C SK +     N YDRGCS
Sbjct: 1  MKSWLICVVFISMLVMSQEVGAQTNHLKFPNPCDLPSPPPSCSSKVKDHAPTNPYDRGCS 60

Query: 61 AINRCRG 67
          AI+RCRG
Sbjct: 61 AIHRCRG 67

[Close]

BLAST of MELO3C016539 vs. ExPASy Swiss-Prot
Match: Q9LSG0 (Protein RALF-like 25 OS=Arabidopsis thaliana OX=3702 GN=RALFL25 PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.5e-05
Identity = 28/69 (40.58%), Postives = 41/69 (59.42%), Query Frame = 0


Query: 1  MKSWLICLALI-GMLVVGQ-EVTAETKHLKFLDPCNQPSPPPTCSKT--EKREEANSYDR 60
          MK+++I L +I  +L+VG+ E     +    LDPC +P+ PP C +   + R   N Y R
Sbjct: 1  MKTFMIILLVICSILIVGRVEANDNKRKYLLLDPCLRPNAPPGCHRQPYKPRTPVNVYSR 60

Query: 61 GCSAINRCR 66
          GC+ INRCR
Sbjct: 61 GCTTINRCR 69

[Close]

BLAST of MELO3C016539 vs. ExPASy Swiss-Prot
Match: O65919 (Protein RALF-like 10 OS=Arabidopsis thaliana OX=3702 GN=RALFL10 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 2.6e-05
Identity = 27/71 (38.03%), Postives = 39/71 (54.93%), Query Frame = 0


Query: 1  MKSWLICLALIGMLVVGQEVTAETKHLKF--LDPCNQPSPPPTC----SKTEKREEANSY 60
          MK+ +ICL +I   V+   V +  KHL +  +  C  P+PPP C    ++ +    AN Y
Sbjct: 1  MKALVICLLVIFAAVIAVPVESRRKHLDYGVITKCAGPNPPPGCYPPGAQQKNPTPANEY 60

Query: 61 DRGCSAINRCR 66
           RGCS I RC+
Sbjct: 61 RRGCSKITRCK 71

[Close]

BLAST of MELO3C016539 vs. ExPASy TrEMBL
Match: A0A0A0LI94 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G191310 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 5.2e-25
Identity = 57/67 (85.07%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 1  MKSWLICLALIGMLVVGQEVTAETKHLKFLDPCNQPSPPPTCSKTEKREEANSYDRGCSA 60
          MKSWLICLALIGMLVVGQEV AETKHLKF+DPCNQPSPPPTC   +K EEAN Y+R CSA
Sbjct: 1  MKSWLICLALIGMLVVGQEVAAETKHLKFIDPCNQPSPPPTCPNRDKVEEANPYNRDCSA 60

Query: 61 INRCRGG 68
          INRCRGG
Sbjct: 61 INRCRGG 67

[Close]

BLAST of MELO3C016539 vs. ExPASy TrEMBL
Match: A0A1S4DY33 (protein RALF-like 30 OS=Cucumis melo OX=3656 GN=LOC107991083 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.2e-16
Identity = 45/67 (67.16%), Postives = 52/67 (77.61%), Query Frame = 0


Query: 1  MKSWLICLALIGMLVVGQEVTAETKHLKFLDPCNQPSPPPTCSKTEKREEANSYDRGCSA 60
          MKSWLIC AL+ MLV+G EV A+TK LKFLDPC QPSPP +C K E+ +   +YDRGCS 
Sbjct: 1  MKSWLICFALLSMLVMGHEVAAKTKFLKFLDPCLQPSPPRSCYKHERVDSPIAYDRGCSP 60

Query: 61 INRCRGG 68
          I RCRGG
Sbjct: 61 ILRCRGG 67

[Close]

BLAST of MELO3C016539 vs. ExPASy TrEMBL
Match: A0A0A0M0X3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690160 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.3e-15
Identity = 43/67 (64.18%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 1  MKSWLICLALIGMLVVGQEVTAETKHLKFLDPCNQPSPPPTC-SKTEKREEANSYDRGCS 60
          MKSWLIC+  I MLV+ QEV A+T HLKF +PC+ PSPPP+C SK +     N YDRGCS
Sbjct: 1  MKSWLICVVFISMLVMSQEVGAQTNHLKFPNPCDLPSPPPSCSSKVKDHAPTNPYDRGCS 60

Query: 61 AINRCRG 67
          AI+RCRG
Sbjct: 61 AIHRCRG 67

[Close]

BLAST of MELO3C016539 vs. ExPASy TrEMBL
Match: A0A6J1G7J2 (protein RALF-like 10 OS=Cucurbita moschata OX=3662 GN=LOC111451581 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.7e-15
Identity = 45/67 (67.16%), Postives = 49/67 (73.13%), Query Frame = 0


Query: 1  MKSWLICLALIGMLVVGQEVTAETKHLKFLDPCNQPSPPPTCSKTEKREEANSYDRGCSA 60
          M+SWLICL LIGMLVV Q+V +ETK LKF DPC QP+PPP CS       AN Y RGCS 
Sbjct: 1  MRSWLICLVLIGMLVVSQDVASETKFLKFPDPCQQPNPPPGCS-IGNAVPANPYRRGCSK 60

Query: 61 INRCRGG 68
          I RCRGG
Sbjct: 61 ITRCRGG 66

[Close]

BLAST of MELO3C016539 vs. ExPASy TrEMBL
Match: A0A0A0LZK3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G610770 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.1e-13
Identity = 41/67 (61.19%), Postives = 46/67 (68.66%), Query Frame = 0


Query: 1   MKSWLICLALIGMLVVGQEVTAETKHLKFLDPCNQPSPPPTCSKTEKREEANSYDRGCSA 60
           MKSWLIC AL+ MLV+  EV AE K L F D C QPSPP +C K E+ +    YDRGCS 
Sbjct: 34  MKSWLICFALLSMLVMSHEVAAEGKFLNFSDLCLQPSPPKSCYKDERADSPIPYDRGCSP 93

Query: 61  INRCRGG 68
           I RCRGG
Sbjct: 94  ILRCRGG 100

[Close]

BLAST of MELO3C016539 vs. TAIR 10
Match: AT3G25165.1 (ralf-like 25 )

HSP 1 Score: 49.7 bits (117), Expect = 1.1e-06
Identity = 28/69 (40.58%), Postives = 41/69 (59.42%), Query Frame = 0


Query: 1  MKSWLICLALI-GMLVVGQ-EVTAETKHLKFLDPCNQPSPPPTCSKT--EKREEANSYDR 60
          MK+++I L +I  +L+VG+ E     +    LDPC +P+ PP C +   + R   N Y R
Sbjct: 1  MKTFMIILLVICSILIVGRVEANDNKRKYLLLDPCLRPNAPPGCHRQPYKPRTPVNVYSR 60

Query: 61 GCSAINRCR 66
          GC+ INRCR
Sbjct: 61 GCTTINRCR 69

[Close]

BLAST of MELO3C016539 vs. TAIR 10
Match: AT2G19020.1 (ralf-like 10 )

HSP 1 Score: 48.9 bits (115), Expect = 1.8e-06
Identity = 27/71 (38.03%), Postives = 39/71 (54.93%), Query Frame = 0


Query: 1  MKSWLICLALIGMLVVGQEVTAETKHLKF--LDPCNQPSPPPTC----SKTEKREEANSY 60
          MK+ +ICL +I   V+   V +  KHL +  +  C  P+PPP C    ++ +    AN Y
Sbjct: 1  MKALVICLLVIFAAVIAVPVESRRKHLDYGVITKCAGPNPPPGCYPPGAQQKNPTPANEY 60

Query: 61 DRGCSAINRCR 66
           RGCS I RC+
Sbjct: 61 RRGCSKITRCK 71

The following BLAST results are available for this feature:

BLAST of MELO3C016539 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877580.1	2.3e-19	70.15	protein RALF-like 11 [Benincasa hispida]	[more]
KAE8651825.1	2.0e-18	74.60	hypothetical protein Csa_006496, partial [Cucumis sativus]	[more]
KAE8651824.1	2.6e-18	83.93	hypothetical protein Csa_006092, partial [Cucumis sativus]	[more]
XP_016900883.1	2.4e-16	67.16	PREDICTED: protein RALF-like 30 [Cucumis melo]	[more]
KAE8637268.1	2.7e-15	64.18	hypothetical protein CSA_017684 [Cucumis sativus]	[more]

BLAST of MELO3C016539 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LSG0	1.5e-05	40.58	Protein RALF-like 25 OS=Arabidopsis thaliana OX=3702 GN=RALFL25 PE=3 SV=1	[more]
O65919	2.6e-05	38.03	Protein RALF-like 10 OS=Arabidopsis thaliana OX=3702 GN=RALFL10 PE=2 SV=1	[more]

BLAST of MELO3C016539 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LI94	5.2e-25	85.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G191310 PE=3 SV=1	[more]
A0A1S4DY33	1.2e-16	67.16	protein RALF-like 30 OS=Cucumis melo OX=3656 GN=LOC107991083 PE=3 SV=1	[more]
A0A0A0M0X3	1.3e-15	64.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690160 PE=3 SV=1	[more]
A0A6J1G7J2	1.7e-15	67.16	protein RALF-like 10 OS=Cucurbita moschata OX=3662 GN=LOC111451581 PE=3 SV=1	[more]
A0A0A0LZK3	2.1e-13	61.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G610770 PE=3 SV=1	[more]

BLAST of MELO3C016539 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G25165.1	1.1e-06	40.58	ralf-like 25	[more]
AT2G19020.1	1.8e-06	38.03	ralf-like 10	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008801	Rapid ALkalinization Factor	PFAM	PF05498	RALF	coord: 32..66 e-value: 1.1E-9 score: 39.1
None	No IPR available	PANTHER	PTHR34270:SF5	PROTEIN RALF-LIKE 10-RELATED	coord: 1..67
None	No IPR available	PANTHER	PTHR34270	PROTEIN RALF-LIKE 15-RELATED	coord: 1..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C016539.1	MELO3C016539.1	mRNA