MELO3C016526 (gene) Melon (DHL92) v4

Overview


Name	MELO3C016526
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Pseudouridine-5'-phosphate glycosidase
Location	chr10: 11180624 .. 11180903 (+)
RNA-Seq Expression	MELO3C016526
Synteny	MELO3C016526

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATATATTTTCTGATCTCACCGAGCTAGGAAAAACCCCTGTAGCTATCATCTCAGCTGGTGTACAATCGATATTAGACATCTCCAGGACCCTTGAATATTTGATACAGTCTTTTATTTTCCTGCAATAAACCTTTTTACACATCATGCAACTTTCTTTTTTATTTATTCACTGGCCCAAAAATGTTATTAACACAGGAAACTCAAGGAGTATGTGTTGCAGCTTATAGAATGACAAACGAATTTTCTGCTTTTTTCATGGAAACCAGTGGCTGCAAG

mRNA sequence

ATGGATATATTTTCTGATCTCACCGAGCTAGGAAAAACCCCTGTAGCTATCATCTCAGCTGGTGTACAATCGATATTAGACATCTCCAGGACCCTTGAATATTTGGAAACTCAAGGAGTATGTGTTGCAGCTTATAGAATGACAAACGAATTTTCTGCTTTTTTCATGGAAACCAGTGGCTGCAAG

Coding sequence (CDS)

ATGGATATATTTTCTGATCTCACCGAGCTAGGAAAAACCCCTGTAGCTATCATCTCAGCTGGTGTACAATCGATATTAGACATCTCCAGGACCCTTGAATATTTGGAAACTCAAGGAGTATGTGTTGCAGCTTATAGAATGACAAACGAATTTTCTGCTTTTTTCATGGAAACCAGTGGCTGCAAG

Protein sequence

MDIFSDLTELGKTPVAIISAGVQSILDISRTLEYLETQGVCVAAYRMTNEFSAFFMETSGCK

Homology

[Close]

BLAST of MELO3C016526 vs. NCBI nr
Match: XP_028944660.1 (uncharacterized protein LOC103413165 [Malus domestica])

HSP 1 Score: 105.5 bits (262), Expect = 1.6e-19
Identity = 54/62 (87.10%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1   MDIFSDLTELGKTPVAIISAGVQSILDISRTLEYLETQGVCVAAYRMTNEFSAFFMETSG 60
           MDI SDLTELG+TPVA+ISAGV+SILDI RTLEYLETQGVCVAAYR TNEF AFF ETSG
Sbjct: 168 MDISSDLTELGRTPVAVISAGVKSILDIPRTLEYLETQGVCVAAYR-TNEFPAFFTETSG 227

Query: 61  CK 63
           CK
Sbjct: 228 CK 228

[Close]

BLAST of MELO3C016526 vs. NCBI nr
Match: XP_021819796.1 (uncharacterized protein LOC110761605 [Prunus avium])

HSP 1 Score: 105.5 bits (262), Expect = 1.6e-19
Identity = 54/62 (87.10%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1   MDIFSDLTELGKTPVAIISAGVQSILDISRTLEYLETQGVCVAAYRMTNEFSAFFMETSG 60
           MDI SDLTELG+TPVA+ISAGV+SILDI RTLEYLETQGVCVAAYR TNEF AFF ETSG
Sbjct: 164 MDISSDLTELGRTPVAVISAGVKSILDIPRTLEYLETQGVCVAAYR-TNEFPAFFSETSG 223

Query: 61  CK 63
           CK
Sbjct: 224 CK 224

[Close]

BLAST of MELO3C016526 vs. NCBI nr
Match: XP_031736108.1 (uncharacterized protein LOC101217190 isoform X2 [Cucumis sativus])

HSP 1 Score: 105.5 bits (262), Expect = 1.6e-19
Identity = 54/62 (87.10%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1   MDIFSDLTELGKTPVAIISAGVQSILDISRTLEYLETQGVCVAAYRMTNEFSAFFMETSG 60
           MDI SDLTELG+TPVA+ISAGV+SILDI RTLEYLETQGVCVAAYR TNEF AFF ETSG
Sbjct: 106 MDISSDLTELGRTPVAVISAGVKSILDIPRTLEYLETQGVCVAAYR-TNEFPAFFTETSG 165

Query: 61  CK 63
           CK
Sbjct: 166 CK 166

[Close]

BLAST of MELO3C016526 vs. NCBI nr
Match: TQE01870.1 (hypothetical protein C1H46_012494 [Malus baccata])

HSP 1 Score: 105.5 bits (262), Expect = 1.6e-19
Identity = 54/62 (87.10%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1   MDIFSDLTELGKTPVAIISAGVQSILDISRTLEYLETQGVCVAAYRMTNEFSAFFMETSG 60
           MDI SDLTELG+TPVA+ISAGV+SILDI RTLEYLETQGVCVAAYR TNEF AFF ETSG
Sbjct: 168 MDISSDLTELGRTPVAVISAGVKSILDIPRTLEYLETQGVCVAAYR-TNEFPAFFTETSG 227

Query: 61  CK 63
           CK
Sbjct: 228 CK 228

[Close]

BLAST of MELO3C016526 vs. NCBI nr
Match: XP_009356077.1 (PREDICTED: uncharacterized protein LOC103946974 [Pyrus x bretschneideri] >XP_009356079.1 PREDICTED: uncharacterized protein LOC103946974 [Pyrus x bretschneideri] >XP_009356080.1 PREDICTED: uncharacterized protein LOC103946974 [Pyrus x bretschneideri])

HSP 1 Score: 105.5 bits (262), Expect = 1.6e-19
Identity = 54/62 (87.10%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1   MDIFSDLTELGKTPVAIISAGVQSILDISRTLEYLETQGVCVAAYRMTNEFSAFFMETSG 60
           MDI SDLTELG+TPVA+ISAGV+SILDI RTLEYLETQGVCVAAYR TNEF AFF ETSG
Sbjct: 168 MDISSDLTELGRTPVAVISAGVKSILDIPRTLEYLETQGVCVAAYR-TNEFPAFFTETSG 227

Query: 61  CK 63
           CK
Sbjct: 228 CK 228

[Close]

BLAST of MELO3C016526 vs. ExPASy Swiss-Prot
Match: C0ZIY1 (Pseudouridine-5'-phosphate glycosidase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) OX=358681 GN=psuG PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.5e-12
Identity = 37/59 (62.71%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 2   DIFSDLTELGKTPVAIISAGVQSILDISRTLEYLETQGVCVAAYRMTNEFSAFFMETSG 61
           D+ +DLTEL +T VA++ AG +SILDI RTLEYLETQGV V  YR T+EF +FF   SG
Sbjct: 138 DVSADLTELAQTDVAVVCAGAKSILDIGRTLEYLETQGVPVVGYR-TDEFPSFFARKSG 195

[Close]

BLAST of MELO3C016526 vs. ExPASy Swiss-Prot
Match: Q1M4T3 (Pseudouridine-5'-phosphate glycosidase 2 OS=Rhizobium leguminosarum bv. viciae (strain 3841) OX=216596 GN=psuG2 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.9e-12
Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 2   DIFSDLTELGKTPVAIISAGVQSILDISRTLEYLETQGVCVAAYRMTNEFSAFFMETSGC 61
           DI +DLTELG+T  A++ AGV+SILDI++TLEYLETQ V V AY  T +F AFF   SG 
Sbjct: 139 DISADLTELGRTKTAVVCAGVKSILDIAKTLEYLETQRVPVIAYG-TEDFPAFFTRRSGF 198

Query: 62  K 63
           K
Sbjct: 199 K 198

[Close]

BLAST of MELO3C016526 vs. ExPASy Swiss-Prot
Match: B8II14 (Pseudouridine-5'-phosphate glycosidase OS=Methylobacterium nodulans (strain LMG 21967 / CNCM I-2342 / ORS 2060) OX=460265 GN=psuG PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.9e-11
Identity = 34/60 (56.67%), Postives = 45/60 (75.00%), Query Frame = 0


Query: 1   MDIFSDLTELGKTPVAIISAGVQSILDISRTLEYLETQGVCVAAYRMTNEFSAFFMETSG 60
           +DI +DL EL +TPVA++ AG ++ILD+ RTLEYLET+GV V  YR T+ F AF+   SG
Sbjct: 138 LDISADLDELARTPVAVVCAGAKAILDLPRTLEYLETRGVPVVGYR-TDRFPAFWSRDSG 196

[Close]

BLAST of MELO3C016526 vs. ExPASy Swiss-Prot
Match: B9LGZ1 (Pseudouridine-5'-phosphate glycosidase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) OX=480224 GN=psuG PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.8e-11
Identity = 34/59 (57.63%), Postives = 44/59 (74.58%), Query Frame = 0


Query: 2   DIFSDLTELGKTPVAIISAGVQSILDISRTLEYLETQGVCVAAYRMTNEFSAFFMETSG 61
           D+ +DLTELG+TPV ++ AG ++ILD+  TLEYLETQGV V  Y+ T EF AF+   SG
Sbjct: 136 DVSADLTELGRTPVLVVCAGAKAILDLPATLEYLETQGVPVVGYQ-TVEFPAFYTPHSG 193

[Close]

BLAST of MELO3C016526 vs. ExPASy Swiss-Prot
Match: Q8NYD0 (Pseudouridine-5'-phosphate glycosidase OS=Staphylococcus aureus (strain MW2) OX=196620 GN=psuG PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.8e-11
Identity = 36/62 (58.06%), Postives = 44/62 (70.97%), Query Frame = 0


Query: 1   MDIFSDLTELGKTPVAIISAGVQSILDISRTLEYLETQGVCVAAYRMTNEFSAFFMETSG 60
           MDI +DL EL KT V +I AG +SILD+ +T+EYLET+GV V  Y+ TNE  AFF   SG
Sbjct: 140 MDISADLEELSKTNVTVICAGAKSILDLPKTMEYLETKGVPVIGYQ-TNELPAFFTRESG 199

Query: 61  CK 63
            K
Sbjct: 200 VK 200

[Close]

BLAST of MELO3C016526 vs. ExPASy TrEMBL
Match: A0A6P5T0R7 (uncharacterized protein LOC110761605 OS=Prunus avium OX=42229 GN=LOC110761605 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 8.0e-20
Identity = 54/62 (87.10%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1   MDIFSDLTELGKTPVAIISAGVQSILDISRTLEYLETQGVCVAAYRMTNEFSAFFMETSG 60
           MDI SDLTELG+TPVA+ISAGV+SILDI RTLEYLETQGVCVAAYR TNEF AFF ETSG
Sbjct: 164 MDISSDLTELGRTPVAVISAGVKSILDIPRTLEYLETQGVCVAAYR-TNEFPAFFSETSG 223

Query: 61  CK 63
           CK
Sbjct: 224 CK 224

[Close]

BLAST of MELO3C016526 vs. ExPASy TrEMBL
Match: A0A0A0LXQ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G616850 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 8.0e-20
Identity = 54/62 (87.10%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1   MDIFSDLTELGKTPVAIISAGVQSILDISRTLEYLETQGVCVAAYRMTNEFSAFFMETSG 60
           MDI SDLTELG+TPVA+ISAGV+SILDI RTLEYLETQGVCVAAYR TNEF AFF ETSG
Sbjct: 174 MDISSDLTELGRTPVAVISAGVKSILDIPRTLEYLETQGVCVAAYR-TNEFPAFFTETSG 233

Query: 61  CK 63
           CK
Sbjct: 234 CK 234

[Close]

BLAST of MELO3C016526 vs. ExPASy TrEMBL
Match: A0A6J1H9J4 (uncharacterized protein LOC111461367 OS=Cucurbita moschata OX=3662 GN=LOC111461367 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 8.0e-20
Identity = 54/62 (87.10%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1   MDIFSDLTELGKTPVAIISAGVQSILDISRTLEYLETQGVCVAAYRMTNEFSAFFMETSG 60
           MDI SDLTELG+TPVA+ISAGV+SILDI RTLEYLETQGVCVAAYR TNEF AFF ETSG
Sbjct: 178 MDISSDLTELGRTPVAVISAGVKSILDIPRTLEYLETQGVCVAAYR-TNEFPAFFTETSG 237

Query: 61  CK 63
           CK
Sbjct: 238 CK 238

[Close]

BLAST of MELO3C016526 vs. ExPASy TrEMBL
Match: A0A5N5FXX7 (Pseudouridine-metabolizing bifunctional protein C1861.05-like OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_005957 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 8.0e-20
Identity = 54/62 (87.10%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1   MDIFSDLTELGKTPVAIISAGVQSILDISRTLEYLETQGVCVAAYRMTNEFSAFFMETSG 60
           MDI SDLTELG+TPVA+ISAGV+SILDI RTLEYLETQGVCVAAYR TNEF AFF ETSG
Sbjct: 490 MDISSDLTELGRTPVAVISAGVKSILDIPRTLEYLETQGVCVAAYR-TNEFPAFFTETSG 549

Query: 61  CK 63
           CK
Sbjct: 550 CK 550

[Close]

BLAST of MELO3C016526 vs. ExPASy TrEMBL
Match: A0A540MU24 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_012494 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 8.0e-20
Identity = 54/62 (87.10%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1   MDIFSDLTELGKTPVAIISAGVQSILDISRTLEYLETQGVCVAAYRMTNEFSAFFMETSG 60
           MDI SDLTELG+TPVA+ISAGV+SILDI RTLEYLETQGVCVAAYR TNEF AFF ETSG
Sbjct: 168 MDISSDLTELGRTPVAVISAGVKSILDIPRTLEYLETQGVCVAAYR-TNEFPAFFTETSG 227

Query: 61  CK 63
           CK
Sbjct: 228 CK 228

[Close]

BLAST of MELO3C016526 vs. TAIR 10
Match: AT1G50510.1 (indigoidine synthase A family protein )

HSP 1 Score: 87.4 bits (215), Expect = 4.3e-18
Identity = 45/62 (72.58%), Postives = 53/62 (85.48%), Query Frame = 0


Query: 1   MDIFSDLTELGKTPVAIISAGVQSILDISRTLEYLETQGVCVAAYRMTNEFSAFFMETSG 60
           MDI SDLT LG+TP+A+ISAGV+SILDI +TLEYLETQ V VAAY+ ++EF AFF E SG
Sbjct: 163 MDISSDLTALGRTPIAVISAGVKSILDIPKTLEYLETQEVYVAAYK-SDEFPAFFTEKSG 222

Query: 61  CK 63
           CK
Sbjct: 223 CK 223

The following BLAST results are available for this feature:

BLAST of MELO3C016526 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_028944660.1	1.6e-19	87.10	uncharacterized protein LOC103413165 [Malus domestica]	[more]
XP_021819796.1	1.6e-19	87.10	uncharacterized protein LOC110761605 [Prunus avium]	[more]
XP_031736108.1	1.6e-19	87.10	uncharacterized protein LOC101217190 isoform X2 [Cucumis sativus]	[more]
TQE01870.1	1.6e-19	87.10	hypothetical protein C1H46_012494 [Malus baccata]	[more]
XP_009356077.1	1.6e-19	87.10	PREDICTED: uncharacterized protein LOC103946974 [Pyrus x bretschneideri] >XP_009...	[more]

BLAST of MELO3C016526 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
C0ZIY1	1.5e-12	62.71	Pseudouridine-5'-phosphate glycosidase OS=Brevibacillus brevis (strain 47 / JCM ...	[more]
Q1M4T3	5.9e-12	62.30	Pseudouridine-5'-phosphate glycosidase 2 OS=Rhizobium leguminosarum bv. viciae (...	[more]
B8II14	2.9e-11	56.67	Pseudouridine-5'-phosphate glycosidase OS=Methylobacterium nodulans (strain LMG ...	[more]
B9LGZ1	3.8e-11	57.63	Pseudouridine-5'-phosphate glycosidase OS=Chloroflexus aurantiacus (strain ATCC ...	[more]
Q8NYD0	3.8e-11	58.06	Pseudouridine-5'-phosphate glycosidase OS=Staphylococcus aureus (strain MW2) OX=...	[more]

BLAST of MELO3C016526 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P5T0R7	8.0e-20	87.10	uncharacterized protein LOC110761605 OS=Prunus avium OX=42229 GN=LOC110761605 PE...	[more]
A0A0A0LXQ4	8.0e-20	87.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G616850 PE=3 SV=1	[more]
A0A6J1H9J4	8.0e-20	87.10	uncharacterized protein LOC111461367 OS=Cucurbita moschata OX=3662 GN=LOC1114613...	[more]
A0A5N5FXX7	8.0e-20	87.10	Pseudouridine-metabolizing bifunctional protein C1861.05-like OS=Pyrus ussuriens...	[more]
A0A540MU24	8.0e-20	87.10	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_012494 PE=3 SV=1	[more]

BLAST of MELO3C016526 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G50510.1	4.3e-18	72.58	indigoidine synthase A family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022830	Indigoidine synthase A-like	GENE3D	3.40.1790.10	Indigoidine synthase domain	coord: 1..62 e-value: 1.8E-26 score: 94.7
IPR022830	Indigoidine synthase A-like	SUPERFAMILY	110581	Indigoidine synthase A-like	coord: 1..62
IPR007342	Pseudouridine-5'-phosphate glycosidase	PFAM	PF04227	Indigoidine_A	coord: 1..62 e-value: 1.7E-24 score: 86.6
IPR007342	Pseudouridine-5'-phosphate glycosidase	PANTHER	PTHR42909	ZGC:136858	coord: 1..62
None	No IPR available	PANTHER	PTHR42909:SF1	ZGC:136858	coord: 1..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C016526.1	MELO3C016526.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016798	hydrolase activity, acting on glycosyl bonds
molecular_function	GO:0004730	pseudouridylate synthase activity