MELO3C016522.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C016522.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	fibroin heavy chain-like
Location	chr06: 27346453 .. 27347275 (+)
RNA-Seq Expression	MELO3C016522.jh1
Synteny	MELO3C016522.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATAAACCATGGCTTCCCTCAAATATTTCCTTCTCTCTCCCTTTCTTTTCCTCTGCTTAAGCTACACCTTTGCCGACGGAGTCTTCAATTATGACCATGGACTTGACTTCGGTTCCATGTCTTCGCCAACACCTGATCCGAGTGCTGGCCCAGGAGTCGATATAGGGGTAAGCAATATCGGTATCGGTCCGAAAGCCGGACCGAGAGCTGGGCTAGGAATTGGAGGAGGGATAAGTGATGTCGATGATGAACCAGGACCGAAAGCTGGACCAAAAGCTAGTGGAGGACATAAGTTAGGGGTAAGTGGTATTGAGGCCGGTCCAAGAGCTGGGCCGAAAGGTGTTAATGGGTTCGGGGTCGGAGTCGGAGTCGATTTGCCTCCTGTATTTGGGGGTCCAAAAATTGGGCTAAAGCCGGGACCAGGAGGGTGGTATAGGCCTGGGCCAATAATACAAGAACCGTACGGTAATTGCATGTTGGGCTATGTTTGTCCAAATAGGCCTTGGGCATGCAGCAAATTTGCGTATGGACTTTGTGATTCTTATAACTTCCATCCATTGTCGGCTTCTACAGACTTGCATGAAGTTAAAATCAATTGGGCCAAAAGTAAGCCTGATGCAACCGCCCAACATGGTGAATCTGGACCAGCTACTCACGTTGACTCAGCCCACTAAGAAGGCCCAACATGGTGTAATCTATATGTTTTCTTCACGGCCATCTCCTTCCGATCATGCACTTTTAAATAATCTTATTTCACATCTTAAATAAAAAGAACCTTTAAAAAAAAACATAAAAATAAAGCTGCAATGTTACAACCTTGTT

mRNA sequence

AAATAAACCATGGCTTCCCTCAAATATTTCCTTCTCTCTCCCTTTCTTTTCCTCTGCTTAAGCTACACCTTTGCCGACGGAGTCTTCAATTATGACCATGGACTTGACTTCGGTTCCATGTCTTCGCCAACACCTGATCCGAGTGCTGGCCCAGGAGTCGATATAGGGGTAAGCAATATCGGTATCGGTCCGAAAGCCGGACCGAGAGCTGGGCTAGGAATTGGAGGAGGGATAAGTGATGTCGATGATGAACCAGGACCGAAAGCTGGACCAAAAGCTAGTGGAGGACATAAGTTAGGGGTAAGTGGTATTGAGGCCGGTCCAAGAGCTGGGCCGAAAGGTGTTAATGGGTTCGGGGTCGGAGTCGGAGTCGATTTGCCTCCTGTATTTGGGGGTCCAAAAATTGGGCTAAAGCCGGGACCAGGAGGGTGGTATAGGCCTGGGCCAATAATACAAGAACCGTACGGTAATTGCATGTTGGGCTATGTTTGTCCAAATAGGCCTTGGGCATGCAGCAAATTTGCGTATGGACTTTGTGATTCTTATAACTTCCATCCATTGTCGGCTTCTACAGACTTGCATGAAGTTAAAATCAATTGGGCCAAAAGTAAGCCTGATGCAACCGCCCAACATGGTGAATCTGGACCAGCTACTCACGTTGACTCAGCCCACTAAGAAGGCCCAACATGGTGTAATCTATATGTTTTCTTCACGGCCATCTCCTTCCGATCATGCACTTTTAAATAATCTTATTTCACATCTTAAATAAAAAGAACCTTTAAAAAAAAACATAAAAATAAAGCTGCAATGTTACAACCTTGTT

Coding sequence (CDS)

ATGGCTTCCCTCAAATATTTCCTTCTCTCTCCCTTTCTTTTCCTCTGCTTAAGCTACACCTTTGCCGACGGAGTCTTCAATTATGACCATGGACTTGACTTCGGTTCCATGTCTTCGCCAACACCTGATCCGAGTGCTGGCCCAGGAGTCGATATAGGGGTAAGCAATATCGGTATCGGTCCGAAAGCCGGACCGAGAGCTGGGCTAGGAATTGGAGGAGGGATAAGTGATGTCGATGATGAACCAGGACCGAAAGCTGGACCAAAAGCTAGTGGAGGACATAAGTTAGGGGTAAGTGGTATTGAGGCCGGTCCAAGAGCTGGGCCGAAAGGTGTTAATGGGTTCGGGGTCGGAGTCGGAGTCGATTTGCCTCCTGTATTTGGGGGTCCAAAAATTGGGCTAAAGCCGGGACCAGGAGGGTGGTATAGGCCTGGGCCAATAATACAAGAACCGTACGGTAATTGCATGTTGGGCTATGTTTGTCCAAATAGGCCTTGGGCATGCAGCAAATTTGCGTATGGACTTTGTGATTCTTATAACTTCCATCCATTGTCGGCTTCTACAGACTTGCATGAAGTTAAAATCAATTGGGCCAAAAGTAAGCCTGATGCAACCGCCCAACATGGTGAATCTGGACCAGCTACTCACGTTGACTCAGCCCACTAA

Protein sequence

MASLKYFLLSPFLFLCLSYTFADGVFNYDHGLDFGSMSSPTPDPSAGPGVDIGVSNIGIGPKAGPRAGLGIGGGISDVDDEPGPKAGPKASGGHKLGVSGIEAGPRAGPKGVNGFGVGVGVDLPPVFGGPKIGLKPGPGGWYRPGPIIQEPYGNCMLGYVCPNRPWACSKFAYGLCDSYNFHPLSASTDLHEVKINWAKSKPDATAQHGESGPATHVDSAH

Homology

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BLAST of MELO3C016522.jh1 vs. NCBI nr
Match: KAA0060661.1 (hypothetical protein E6C27_scaffold22G005540 [Cucumis melo var. makuwa] >TYK02214.1 hypothetical protein E5676_scaffold18G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 462 bits (1189), Expect = 1.82e-164
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0


Query: 1   MASLKYFLLSPFLFLCLSYTFADGVFNYDHGLDFGSMSSPTPDPSAGPGVDIGVSNIGIG 60
           MASLKYFLLSPFLFLCLSYTFADGVFNYDHGLDFGSMSSPTPDPSAGPGVDIGVSNIGIG
Sbjct: 1   MASLKYFLLSPFLFLCLSYTFADGVFNYDHGLDFGSMSSPTPDPSAGPGVDIGVSNIGIG 60

Query: 61  PKAGPRAGLGIGGGISDVDDEPGPKAGPKASGGHKLGVSGIEAGPRAGPKGVNGFGVGVG 120
           PKAGPRAGLGIGGGISDVDDEPGPKAGPKASGGHKLGVSGIEAGPRAGPKGVNGFGVGVG
Sbjct: 61  PKAGPRAGLGIGGGISDVDDEPGPKAGPKASGGHKLGVSGIEAGPRAGPKGVNGFGVGVG 120

Query: 121 VDLPPVFGGPKIGLKPGPGGWYRPGPIIQEPYGNCMLGYVCPNRPWACSKFAYGLCDSYN 180
           VDLPPVFGGPKIGLKPGPGGWYRPGPIIQEPYGNCMLGYVCPNRPWACSKFAYGLCDSYN
Sbjct: 121 VDLPPVFGGPKIGLKPGPGGWYRPGPIIQEPYGNCMLGYVCPNRPWACSKFAYGLCDSYN 180

Query: 181 FHPLSASTDLHEVKINWAKSKPDATAQHGESGPATHVDSAH 221
           FHPLSASTDLHEVKINWAKSKPDATAQHGESGPATHVDSAH
Sbjct: 181 FHPLSASTDLHEVKINWAKSKPDATAQHGESGPATHVDSAH 221

[Close]

BLAST of MELO3C016522.jh1 vs. NCBI nr
Match: KGN56231.1 (hypothetical protein Csa_011503 [Cucumis sativus])

HSP 1 Score: 352 bits (903), Expect = 1.21e-120
Identity = 183/238 (76.89%), Postives = 197/238 (82.77%), Query Frame = 0


Query: 1   MASLKYFLLSPFLFLCLSYTFADGVFNYDHGLDFGSMSSPTPDPSAGPGVDIGVSNIGIG 60
           MASLKYFLLSPFLFLCLSYTFA+GVFNYD GL FGSMSSPTPDPSAGP VD GVSN GIG
Sbjct: 1   MASLKYFLLSPFLFLCLSYTFANGVFNYDDGLGFGSMSSPTPDPSAGP-VDRGVSNFGIG 60

Query: 61  PKAGPRAGLGIGGGISDVDD--EPGPKAGP-------KASGGH---KLGVSGIEAGPRAG 120
           PKAGPRAGLG+GG IS+VDD  +PGPKAGP           G    KLGVS IEAGPRAG
Sbjct: 61  PKAGPRAGLGVGG-ISNVDDGSDPGPKAGPGVKEEMSNVGAGPRVPKLGVSSIEAGPRAG 120

Query: 121 PKGVN----GFGVGVGVDLPPVFGGPKIGLKPGPGGWYRPGPIIQEPYGNCMLGYVCP-N 180
           PKGV+    G GVGVGV+LPP+FGGPK+G++PGPGGWY PGPIIQEPY NCMLGYVCP N
Sbjct: 121 PKGVDPIVTGLGVGVGVNLPPIFGGPKMGIRPGPGGWYGPGPIIQEPYNNCMLGYVCPTN 180

Query: 181 RPWACSKFAYGLCDSYNFHPLSASTDLHEVKINWAKSKPDATAQHGESGPATHVDSAH 221
           RPWAC K  YGLC+SYNF PLSAST+LH+VKINWAKSK   TAQHGESGP  H+DSAH
Sbjct: 181 RPWACGKVGYGLCESYNFRPLSASTELHDVKINWAKSKSVETAQHGESGPGIHIDSAH 236

[Close]

BLAST of MELO3C016522.jh1 vs. NCBI nr
Match: XP_022929340.1 (fibroin heavy chain-like [Cucurbita moschata])

HSP 1 Score: 165 bits (417), Expect = 8.65e-47
Identity = 113/251 (45.02%), Postives = 139/251 (55.38%), Query Frame = 0


Query: 1   MASLKYFLLSPFLFLCLSYTFADGVFNYDHGLDFGSMSSPTPDPSAGPGVDIGVSNIGIG 60
           M SLKYFLLSPF+FLCLS TFA+ V N D G  F   + P   P+AGPGV+ GVSN+  G
Sbjct: 1   MGSLKYFLLSPFVFLCLSCTFANRVPNSDDGSGFDVGAGPGAIPTAGPGVEKGVSNVRAG 60

Query: 61  P-------------KAGPRAGLGIGGGISDVDDEPGPKAGPKASGGHKLGVSGIEAGPRA 120
           P             KAGP+AG G  G +SDV  + G +AGPKA  G +  VS ++AGP  
Sbjct: 61  PAAEGWVNDVWAGLKAGPKAGPGAEGWVSDV--KAGLRAGPKAGPGAEGWVSNVKAGPTV 120

Query: 121 GPKG----------------------VNGFGVGVGVDLPPVFGGPKIGLKPGPGG---WY 180
           GP+                       +NG G+G+GVD+     G + G + G GG   W+
Sbjct: 121 GPRAWPGTEGGVSSSEGGVRRDVDPMINGLGLGLGVDI-----GYRSGFRAGLGGGEHWF 180

Query: 181 RPGPIIQEP--YGNCMLGYVCPNRPW-ACSKFAYGLCDSYNFHPLSASTDLHEVKINWAK 209
            PG  I        C LGYVCP      C KF+YG CD+Y FHPL AS  LHEV++ WAK
Sbjct: 181 GPGIGIGGGGVSNECTLGYVCPTYGRRGCDKFSYGNCDTYGFHPLMASMHLHEVEMKWAK 240

[Close]

BLAST of MELO3C016522.jh1 vs. NCBI nr
Match: KAG6577377.1 (hypothetical protein SDJN03_24951, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 157 bits (397), Expect = 3.03e-43
Identity = 118/295 (40.00%), Postives = 141/295 (47.80%), Query Frame = 0


Query: 1   MASLKYFLLSPFLFLCLSYTFADGVFNYDHGLDFGSMSSPTPDPSAGPGVDIGVSNIGIG 60
           M SLKYFLLSPF+FLCLS TFA+ V N D G  F   + P   P+AGPGV+ GVSN+  G
Sbjct: 1   MGSLKYFLLSPFVFLCLSCTFANRVPNSDDGSGFDVGAGPGAIPTAGPGVEKGVSNVRAG 60

Query: 61  P-------------KAGPRAGLGIGGGISDVDD--EPGPKAGPKASGGHKLGVSGIEAGP 120
           P             KAGP+AG G  G +SDV      GPKAGPKA  G +  VS ++AGP
Sbjct: 61  PAAEGWVNDVRAGLKAGPKAGPGAEGWVSDVKAGLRAGPKAGPKAGPGAEEWVSDVKAGP 120

Query: 121 RAGPKG------------------------------------------------------ 180
           RAGPK                                                       
Sbjct: 121 RAGPKAGPGAEGWVSDVKAGLRAGPKAGPGAEGWVSNVKAGPTVGPRAWPGTEGGVSSSE 180

Query: 181 ----------VNGFGVGVGVDLPPVFGGPKIGLKPGPGG---WYRPGPIIQEP--YGNCM 209
                     +NG G+G+GVD+     G + G + G GG   W+ PG  I        C 
Sbjct: 181 GGVRRDVDPMINGLGLGLGVDI-----GYRSGFRAGLGGGEHWFGPGIGIGGGGVSNECT 240

[Close]

BLAST of MELO3C016522.jh1 vs. NCBI nr
Match: XP_023551824.1 (fibroin heavy chain-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 134 bits (337), Expect = 3.13e-35
Identity = 88/206 (42.72%), Postives = 112/206 (54.37%), Query Frame = 0


Query: 40  PTPDPSAGPGVDIGVSNIGIGPKA---------GPRAGLGIGGGISDVDDEPGPKAGPKA 99
           P   P+AGPGV+ GVSN+  GP A         GP+AG G  G +SDV  + GP+AGPKA
Sbjct: 9   PGAVPTAGPGVEKGVSNVRAGPAAEGWVNDVWAGPKAGPGAEGWVSDV--KAGPRAGPKA 68

Query: 100 SGGHKLGVSGIEAGPRAGPKG----------------------VNGFGVGVGVDLPPVFG 159
             G +  V+ ++AGP  GP+                       +NG G+G+GVD+     
Sbjct: 69  GPGAEGWVNNVKAGPTVGPRAWPGTEGGVSSSEGGVRRDVDPMINGLGLGLGVDI----- 128

Query: 160 GPKIGLKPGPGG---WYRPGPIIQEPYGNCMLGYVCPNRPW-ACSKFAYGLCDSYNFHPL 209
           G + G + G GG   W+ PG   +     C LGYVCP      C KF+YG CDSY FHPL
Sbjct: 129 GYRSGFRAGVGGGEHWFGPGIGGRGVSNECTLGYVCPTYGRRGCDKFSYGNCDSYGFHPL 188

[Close]

BLAST of MELO3C016522.jh1 vs. ExPASy TrEMBL
Match: A0A5A7V4J6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00010 PE=4 SV=1)

HSP 1 Score: 462 bits (1189), Expect = 8.83e-165
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0


Query: 1   MASLKYFLLSPFLFLCLSYTFADGVFNYDHGLDFGSMSSPTPDPSAGPGVDIGVSNIGIG 60
           MASLKYFLLSPFLFLCLSYTFADGVFNYDHGLDFGSMSSPTPDPSAGPGVDIGVSNIGIG
Sbjct: 1   MASLKYFLLSPFLFLCLSYTFADGVFNYDHGLDFGSMSSPTPDPSAGPGVDIGVSNIGIG 60

Query: 61  PKAGPRAGLGIGGGISDVDDEPGPKAGPKASGGHKLGVSGIEAGPRAGPKGVNGFGVGVG 120
           PKAGPRAGLGIGGGISDVDDEPGPKAGPKASGGHKLGVSGIEAGPRAGPKGVNGFGVGVG
Sbjct: 61  PKAGPRAGLGIGGGISDVDDEPGPKAGPKASGGHKLGVSGIEAGPRAGPKGVNGFGVGVG 120

Query: 121 VDLPPVFGGPKIGLKPGPGGWYRPGPIIQEPYGNCMLGYVCPNRPWACSKFAYGLCDSYN 180
           VDLPPVFGGPKIGLKPGPGGWYRPGPIIQEPYGNCMLGYVCPNRPWACSKFAYGLCDSYN
Sbjct: 121 VDLPPVFGGPKIGLKPGPGGWYRPGPIIQEPYGNCMLGYVCPNRPWACSKFAYGLCDSYN 180

Query: 181 FHPLSASTDLHEVKINWAKSKPDATAQHGESGPATHVDSAH 221
           FHPLSASTDLHEVKINWAKSKPDATAQHGESGPATHVDSAH
Sbjct: 181 FHPLSASTDLHEVKINWAKSKPDATAQHGESGPATHVDSAH 221

[Close]

BLAST of MELO3C016522.jh1 vs. ExPASy TrEMBL
Match: A0A0A0L7X7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G104850 PE=4 SV=1)

HSP 1 Score: 352 bits (903), Expect = 5.88e-121
Identity = 183/238 (76.89%), Postives = 197/238 (82.77%), Query Frame = 0


Query: 1   MASLKYFLLSPFLFLCLSYTFADGVFNYDHGLDFGSMSSPTPDPSAGPGVDIGVSNIGIG 60
           MASLKYFLLSPFLFLCLSYTFA+GVFNYD GL FGSMSSPTPDPSAGP VD GVSN GIG
Sbjct: 1   MASLKYFLLSPFLFLCLSYTFANGVFNYDDGLGFGSMSSPTPDPSAGP-VDRGVSNFGIG 60

Query: 61  PKAGPRAGLGIGGGISDVDD--EPGPKAGP-------KASGGH---KLGVSGIEAGPRAG 120
           PKAGPRAGLG+GG IS+VDD  +PGPKAGP           G    KLGVS IEAGPRAG
Sbjct: 61  PKAGPRAGLGVGG-ISNVDDGSDPGPKAGPGVKEEMSNVGAGPRVPKLGVSSIEAGPRAG 120

Query: 121 PKGVN----GFGVGVGVDLPPVFGGPKIGLKPGPGGWYRPGPIIQEPYGNCMLGYVCP-N 180
           PKGV+    G GVGVGV+LPP+FGGPK+G++PGPGGWY PGPIIQEPY NCMLGYVCP N
Sbjct: 121 PKGVDPIVTGLGVGVGVNLPPIFGGPKMGIRPGPGGWYGPGPIIQEPYNNCMLGYVCPTN 180

Query: 181 RPWACSKFAYGLCDSYNFHPLSASTDLHEVKINWAKSKPDATAQHGESGPATHVDSAH 221
           RPWAC K  YGLC+SYNF PLSAST+LH+VKINWAKSK   TAQHGESGP  H+DSAH
Sbjct: 181 RPWACGKVGYGLCESYNFRPLSASTELHDVKINWAKSKSVETAQHGESGPGIHIDSAH 236

[Close]

BLAST of MELO3C016522.jh1 vs. ExPASy TrEMBL
Match: A0A6J1EU53 (fibroin heavy chain-like OS=Cucurbita moschata OX=3662 GN=LOC111435943 PE=4 SV=1)

HSP 1 Score: 165 bits (417), Expect = 4.19e-47
Identity = 113/251 (45.02%), Postives = 139/251 (55.38%), Query Frame = 0


Query: 1   MASLKYFLLSPFLFLCLSYTFADGVFNYDHGLDFGSMSSPTPDPSAGPGVDIGVSNIGIG 60
           M SLKYFLLSPF+FLCLS TFA+ V N D G  F   + P   P+AGPGV+ GVSN+  G
Sbjct: 1   MGSLKYFLLSPFVFLCLSCTFANRVPNSDDGSGFDVGAGPGAIPTAGPGVEKGVSNVRAG 60

Query: 61  P-------------KAGPRAGLGIGGGISDVDDEPGPKAGPKASGGHKLGVSGIEAGPRA 120
           P             KAGP+AG G  G +SDV  + G +AGPKA  G +  VS ++AGP  
Sbjct: 61  PAAEGWVNDVWAGLKAGPKAGPGAEGWVSDV--KAGLRAGPKAGPGAEGWVSNVKAGPTV 120

Query: 121 GPKG----------------------VNGFGVGVGVDLPPVFGGPKIGLKPGPGG---WY 180
           GP+                       +NG G+G+GVD+     G + G + G GG   W+
Sbjct: 121 GPRAWPGTEGGVSSSEGGVRRDVDPMINGLGLGLGVDI-----GYRSGFRAGLGGGEHWF 180

Query: 181 RPGPIIQEP--YGNCMLGYVCPNRPW-ACSKFAYGLCDSYNFHPLSASTDLHEVKINWAK 209
            PG  I        C LGYVCP      C KF+YG CD+Y FHPL AS  LHEV++ WAK
Sbjct: 181 GPGIGIGGGGVSNECTLGYVCPTYGRRGCDKFSYGNCDTYGFHPLMASMHLHEVEMKWAK 240

The following BLAST results are available for this feature:

BLAST of MELO3C016522.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060661.1	1.82e-164	100.00	hypothetical protein E6C27_scaffold22G005540 [Cucumis melo var. makuwa] >TYK0221...	[more]
KGN56231.1	1.21e-120	76.89	hypothetical protein Csa_011503 [Cucumis sativus]	[more]
XP_022929340.1	8.65e-47	45.02	fibroin heavy chain-like [Cucurbita moschata]	[more]
KAG6577377.1	3.03e-43	40.00	hypothetical protein SDJN03_24951, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023551824.1	3.13e-35	42.72	fibroin heavy chain-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MELO3C016522.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C016522.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V4J6	8.83e-165	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0L7X7	5.88e-121	76.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G104850 PE=4 SV=1	[more]
A0A6J1EU53	4.19e-47	45.02	fibroin heavy chain-like OS=Cucurbita moschata OX=3662 GN=LOC111435943 PE=4 SV=1	[more]

BLAST of MELO3C016522.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 202..221

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C016522.jh1.t1	MELO3C016522.jh1.t1	mRNA