MELO3C016461 (gene) Melon (DHL92) v4

Overview
NameMELO3C016461
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Locationchr06: 28052771 .. 28053265 (+)
RNA-Seq ExpressionMELO3C016461
SyntenyMELO3C016461
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGAGTGCGCAGAGACATTCACCGATGTGGGGTCGAATTTGCCTGAAGGGTACGAGGGATTTTCTGCTGACGATGGAAACGATATGGAGATCCCTATGATGTATAGTCAAGGAATAGACATGTTGTCTGATGACATCATGGGCACACGACCCGATCGCTCAACTGAGGGTAGGACTGGTTCAAGCGGGTCGAAGAGGAAGCAGGGAGGTCAGGCGGTAGAAACTATGGAAATCATTCGCAATGTAATGGAACATTCAAATGACCGATTGAAGGCCATTGTAGAATGGTCGAATGTACAACGCCAAGATGCAAGCACAAGACTTGTGGAAGTCGTTAGACAGTTGCAGAGAATACTTGAACTAAGTAGATATGACAGGGTTTGCAGTATGCAGATACTTATGTGCAATGTGGACGACATGAAAGCATTCTTGGACATACTCGATGAGCTTAAATTGGACTATTGCACAATCATTTTTCAAGATAACGCTTAA

mRNA sequence

ATGAGAGAGTGCGCAGAGACATTCACCGATGTGGGGTCGAATTTGCCTGAAGGGTACGAGGGATTTTCTGCTGACGATGGAAACGATATGGAGATCCCTATGATGTATAGTCAAGGAATAGACATGTTGTCTGATGACATCATGGGCACACGACCCGATCGCTCAACTGAGGGTAGGACTGGTTCAAGCGGGTCGAAGAGGAAGCAGGGAGGTCAGGCGGTAGAAACTATGGAAATCATTCGCAATGTAATGGAACATTCAAATGACCGATTGAAGGCCATTGTAGAATGGTCGAATGTACAACGCCAAGATGCAAGCACAAGACTTGTGGAAGTCGTTAGACAGTTGCAGAGAATACTTGAACTAAGTAGATATGACAGGGTTTGCAGTATGCAGATACTTATGTGCAATGTGGACGACATGAAAGCATTCTTGGACATACTCGATGAGCTTAAATTGGACTATTGCACAATCATTTTTCAAGATAACGCTTAA

Coding sequence (CDS)

ATGAGAGAGTGCGCAGAGACATTCACCGATGTGGGGTCGAATTTGCCTGAAGGGTACGAGGGATTTTCTGCTGACGATGGAAACGATATGGAGATCCCTATGATGTATAGTCAAGGAATAGACATGTTGTCTGATGACATCATGGGCACACGACCCGATCGCTCAACTGAGGGTAGGACTGGTTCAAGCGGGTCGAAGAGGAAGCAGGGAGGTCAGGCGGTAGAAACTATGGAAATCATTCGCAATGTAATGGAACATTCAAATGACCGATTGAAGGCCATTGTAGAATGGTCGAATGTACAACGCCAAGATGCAAGCACAAGACTTGTGGAAGTCGTTAGACAGTTGCAGAGAATACTTGAACTAAGTAGATATGACAGGGTTTGCAGTATGCAGATACTTATGTGCAATGTGGACGACATGAAAGCATTCTTGGACATACTCGATGAGCTTAAATTGGACTATTGCACAATCATTTTTCAAGATAACGCTTAA

Protein sequence

MRECAETFTDVGSNLPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWSNVQRQDASTRLVEVVRQLQRILELSRYDRVCSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDNA
Homology
BLAST of MELO3C016461 vs. NCBI nr
Match: KAA0060529.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 306.2 bits (783), Expect = 1.7e-79
Identity = 157/164 (95.73%), Postives = 157/164 (95.73%), Query Frame = 0

Query: 1   MRECAETFTDVGSNLPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRT 60
           MR C ETFTDVGSN PEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRT
Sbjct: 1   MRGCVETFTDVGSNFPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRT 60

Query: 61  GSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWSNVQRQDASTRLVEVVRQLQRIL 120
           GSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEW NVQRQDAS RLVEVVRQLQRI 
Sbjct: 61  GSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWLNVQRQDASARLVEVVRQLQRIP 120

Query: 121 ELSRYDRVCSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDNA 165
           ELSRYDRV SMQILMCNVDDMKAFLDILDELKLDYCTIIFQDNA
Sbjct: 121 ELSRYDRVRSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDNA 164

BLAST of MELO3C016461 vs. NCBI nr
Match: TYK11924.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 165.6 bits (418), Expect = 3.5e-37
Identity = 89/144 (61.81%), Postives = 109/144 (75.69%), Query Frame = 0

Query: 8   FTDVGSNLPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKR 67
           F DVGSN+P GYEGF  D  NDMEIP MYS+G+DM +  I GTR   + E R G S SK+
Sbjct: 8   FVDVGSNVPRGYEGFHVDYENDMEIPTMYSKGLDMSTYYIKGTRFGHTAEDRAGLSESKK 67

Query: 68  KQGGQAVETMEIIRNVMEHSNDRLKAIVEWSNVQRQDASTRLVEVVRQLQRILELSRYDR 127
           K+GGQ++ET+EIIRNVME++ND+LKAI EW NVQ QDAST   E VRQLQ ILELSR D+
Sbjct: 68  KKGGQSIETVEIIRNVMEYANDQLKAIAEWPNVQCQDASTTRFEFVRQLQGILELSRLDK 127

Query: 128 VCSMQILMCNVDDMKAFLDILDEL 152
              + +LM NV+DMKA LD+ D++
Sbjct: 128 AHCICLLMHNVNDMKASLDVSDDM 151

BLAST of MELO3C016461 vs. NCBI nr
Match: KAA0041444.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK24318.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 156.4 bits (394), Expect = 2.1e-34
Identity = 84/158 (53.16%), Postives = 111/158 (70.25%), Query Frame = 0

Query: 6   ETFTDVGSNLPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGS 65
           ++F DVGSN P GY+ F AD   DM+ P MY+QG++M SDD+MGTR     E R  SSGS
Sbjct: 166 KSFADVGSNDPAGYDAFLADAAPDMDFPPMYNQGLNMSSDDLMGTRTAWVREHRNVSSGS 225

Query: 66  KRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWSNVQRQDASTRLVEVVRQLQRILELSRY 125
           KRK+ G + ++ +IIR ++E+ N++L  I EW  +QRQDAS    EVVRQL+ I EL+  
Sbjct: 226 KRKRAGHSADSGDIIRTLIEYENEQLNHIAEWPALQRQDASETRQEVVRQLEAIPELTLM 285

Query: 126 DRVCSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDN 164
           DR   M+ILM NVDDMKAFLD+ + +K  YC+II Q+N
Sbjct: 286 DRCRLMRILMRNVDDMKAFLDVPNNMKYPYCSIILQEN 323

BLAST of MELO3C016461 vs. NCBI nr
Match: KAA0048280.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 153.7 bits (387), Expect = 1.4e-33
Identity = 81/159 (50.94%), Postives = 111/159 (69.81%), Query Frame = 0

Query: 5   AETFTDVGSNLPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSG 64
           AE+F D+GSN P GY+ F+ADD +D +   MYS G++M  DD+M TR  R +E R  SSG
Sbjct: 114 AESFADIGSNDPAGYDAFAADDVSDTDFLPMYSPGLNMSPDDLMETRTARVSERRNVSSG 173

Query: 65  SKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWSNVQRQDASTRLVEVVRQLQRILELSR 124
           SKRK+ G A ++ +I+R  ME+ N++L  I EW  +QRQDA+    E+VRQL+ I EL+ 
Sbjct: 174 SKRKRSGHATDSGDIVRTAMEYGNEQLHRIAEWPILQRQDATETRQEIVRQLEVIPELTL 233

Query: 125 YDRVCSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDN 164
            DR   M+I+M NVDDMKAFL++ D +K  YC+II Q+N
Sbjct: 234 MDRCRLMRIIMRNVDDMKAFLEVPDNMKYPYCSIILQEN 272

BLAST of MELO3C016461 vs. NCBI nr
Match: KAA0035629.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK30913.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 151.8 bits (382), Expect = 5.3e-33
Identity = 81/159 (50.94%), Postives = 106/159 (66.67%), Query Frame = 0

Query: 5   AETFTDVGSNLPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSG 64
           AE F D+GSN P GY+ F AD   D   P MYS G++M  DD+M TR  R +E R  SSG
Sbjct: 142 AENFADIGSNHPAGYDAFPADATPDTNFPSMYSSGLNMSPDDLMETRTARVSERRNVSSG 201

Query: 65  SKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWSNVQRQDASTRLVEVVRQLQRILELSR 124
           SKRK+ G A ++ +I+R  +E+ N++L  I EW  +QRQDAS    E+VRQL+ I +L+ 
Sbjct: 202 SKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDASQTRQEIVRQLEAIPKLTL 261

Query: 125 YDRVCSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDN 164
            DR   M ILM NVDDMKAFL++ D +K  YC+II Q+N
Sbjct: 262 MDRCRLMHILMRNVDDMKAFLEVSDNMKYPYCSIILQEN 300

BLAST of MELO3C016461 vs. ExPASy TrEMBL
Match: A0A5A7V469 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00340 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 8.1e-80
Identity = 157/164 (95.73%), Postives = 157/164 (95.73%), Query Frame = 0

Query: 1   MRECAETFTDVGSNLPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRT 60
           MR C ETFTDVGSN PEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRT
Sbjct: 1   MRGCVETFTDVGSNFPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRT 60

Query: 61  GSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWSNVQRQDASTRLVEVVRQLQRIL 120
           GSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEW NVQRQDAS RLVEVVRQLQRI 
Sbjct: 61  GSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWLNVQRQDASARLVEVVRQLQRIP 120

Query: 121 ELSRYDRVCSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDNA 165
           ELSRYDRV SMQILMCNVDDMKAFLDILDELKLDYCTIIFQDNA
Sbjct: 121 ELSRYDRVRSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDNA 164

BLAST of MELO3C016461 vs. ExPASy TrEMBL
Match: A0A5D3CL79 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G00920 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.7e-37
Identity = 89/144 (61.81%), Postives = 109/144 (75.69%), Query Frame = 0

Query: 8   FTDVGSNLPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKR 67
           F DVGSN+P GYEGF  D  NDMEIP MYS+G+DM +  I GTR   + E R G S SK+
Sbjct: 8   FVDVGSNVPRGYEGFHVDYENDMEIPTMYSKGLDMSTYYIKGTRFGHTAEDRAGLSESKK 67

Query: 68  KQGGQAVETMEIIRNVMEHSNDRLKAIVEWSNVQRQDASTRLVEVVRQLQRILELSRYDR 127
           K+GGQ++ET+EIIRNVME++ND+LKAI EW NVQ QDAST   E VRQLQ ILELSR D+
Sbjct: 68  KKGGQSIETVEIIRNVMEYANDQLKAIAEWPNVQCQDASTTRFEFVRQLQGILELSRLDK 127

Query: 128 VCSMQILMCNVDDMKAFLDILDEL 152
              + +LM NV+DMKA LD+ D++
Sbjct: 128 AHCICLLMHNVNDMKASLDVSDDM 151

BLAST of MELO3C016461 vs. ExPASy TrEMBL
Match: A0A5A7TDD6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00890 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 1.0e-34
Identity = 84/158 (53.16%), Postives = 111/158 (70.25%), Query Frame = 0

Query: 6   ETFTDVGSNLPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGS 65
           ++F DVGSN P GY+ F AD   DM+ P MY+QG++M SDD+MGTR     E R  SSGS
Sbjct: 166 KSFADVGSNDPAGYDAFLADAAPDMDFPPMYNQGLNMSSDDLMGTRTAWVREHRNVSSGS 225

Query: 66  KRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWSNVQRQDASTRLVEVVRQLQRILELSRY 125
           KRK+ G + ++ +IIR ++E+ N++L  I EW  +QRQDAS    EVVRQL+ I EL+  
Sbjct: 226 KRKRAGHSADSGDIIRTLIEYENEQLNHIAEWPALQRQDASETRQEVVRQLEAIPELTLM 285

Query: 126 DRVCSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDN 164
           DR   M+ILM NVDDMKAFLD+ + +K  YC+II Q+N
Sbjct: 286 DRCRLMRILMRNVDDMKAFLDVPNNMKYPYCSIILQEN 323

BLAST of MELO3C016461 vs. ExPASy TrEMBL
Match: A0A5A7TYQ6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G002060 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 6.7e-34
Identity = 81/159 (50.94%), Postives = 111/159 (69.81%), Query Frame = 0

Query: 5   AETFTDVGSNLPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSG 64
           AE+F D+GSN P GY+ F+ADD +D +   MYS G++M  DD+M TR  R +E R  SSG
Sbjct: 114 AESFADIGSNDPAGYDAFAADDVSDTDFLPMYSPGLNMSPDDLMETRTARVSERRNVSSG 173

Query: 65  SKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWSNVQRQDASTRLVEVVRQLQRILELSR 124
           SKRK+ G A ++ +I+R  ME+ N++L  I EW  +QRQDA+    E+VRQL+ I EL+ 
Sbjct: 174 SKRKRSGHATDSGDIVRTAMEYGNEQLHRIAEWPILQRQDATETRQEIVRQLEVIPELTL 233

Query: 125 YDRVCSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDN 164
            DR   M+I+M NVDDMKAFL++ D +K  YC+II Q+N
Sbjct: 234 MDRCRLMRIIMRNVDDMKAFLEVPDNMKYPYCSIILQEN 272

BLAST of MELO3C016461 vs. ExPASy TrEMBL
Match: A0A5D3E474 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G001250 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 2.6e-33
Identity = 81/159 (50.94%), Postives = 106/159 (66.67%), Query Frame = 0

Query: 5   AETFTDVGSNLPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSG 64
           AE F D+GSN P GY+ F AD   D   P MYS G++M  DD+M TR  R +E R  SSG
Sbjct: 142 AENFADIGSNHPAGYDAFPADATPDTNFPSMYSSGLNMSPDDLMETRTARVSERRNVSSG 201

Query: 65  SKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWSNVQRQDASTRLVEVVRQLQRILELSR 124
           SKRK+ G A ++ +I+R  +E+ N++L  I EW  +QRQDAS    E+VRQL+ I +L+ 
Sbjct: 202 SKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDASQTRQEIVRQLEAIPKLTL 261

Query: 125 YDRVCSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDN 164
            DR   M ILM NVDDMKAFL++ D +K  YC+II Q+N
Sbjct: 262 MDRCRLMHILMRNVDDMKAFLEVSDNMKYPYCSIILQEN 300

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0060529.11.7e-7995.73retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon p... [more]
TYK11924.13.5e-3761.81retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0041444.12.1e-3453.16retrotransposon protein [Cucumis melo var. makuwa] >TYK24318.1 retrotransposon p... [more]
KAA0048280.11.4e-3350.94retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0035629.15.3e-3350.94retrotransposon protein [Cucumis melo var. makuwa] >TYK30913.1 retrotransposon p... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V4698.1e-8095.73Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CL791.7e-3761.81Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TDD61.0e-3453.16Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TYQ66.7e-3450.94Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3E4742.6e-3350.94Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..70
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..73

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C016461.1MELO3C016461.1mRNA