Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGAGTGCGCAGAGACATTCACCGATGTGGGGTCGAATTTGCCTGAAGGGTACGAGGGATTTTCTGCTGACGATGGAAACGATATGGAGATCCCTATGATGTATAGTCAAGGAATAGACATGTTGTCTGATGACATCATGGGCACACGACCCGATCGCTCAACTGAGGGTAGGACTGGTTCAAGCGGGTCGAAGAGGAAGCAGGGAGGTCAGGCGGTAGAAACTATGGAAATCATTCGCAATGTAATGGAACATTCAAATGACCGATTGAAGGCCATTGTAGAATGGTCGAATGTACAACGCCAAGATGCAAGCACAAGACTTGTGGAAGTCGTTAGACAGTTGCAGAGAATACTTGAACTAAGTAGATATGACAGGGTTTGCAGTATGCAGATACTTATGTGCAATGTGGACGACATGAAAGCATTCTTGGACATACTCGATGAGCTTAAATTGGACTATTGCACAATCATTTTTCAAGATAACGCTTAA
mRNA sequence
ATGAGAGAGTGCGCAGAGACATTCACCGATGTGGGGTCGAATTTGCCTGAAGGGTACGAGGGATTTTCTGCTGACGATGGAAACGATATGGAGATCCCTATGATGTATAGTCAAGGAATAGACATGTTGTCTGATGACATCATGGGCACACGACCCGATCGCTCAACTGAGGGTAGGACTGGTTCAAGCGGGTCGAAGAGGAAGCAGGGAGGTCAGGCGGTAGAAACTATGGAAATCATTCGCAATGTAATGGAACATTCAAATGACCGATTGAAGGCCATTGTAGAATGGTCGAATGTACAACGCCAAGATGCAAGCACAAGACTTGTGGAAGTCGTTAGACAGTTGCAGAGAATACTTGAACTAAGTAGATATGACAGGGTTTGCAGTATGCAGATACTTATGTGCAATGTGGACGACATGAAAGCATTCTTGGACATACTCGATGAGCTTAAATTGGACTATTGCACAATCATTTTTCAAGATAACGCTTAA
Coding sequence (CDS)
ATGAGAGAGTGCGCAGAGACATTCACCGATGTGGGGTCGAATTTGCCTGAAGGGTACGAGGGATTTTCTGCTGACGATGGAAACGATATGGAGATCCCTATGATGTATAGTCAAGGAATAGACATGTTGTCTGATGACATCATGGGCACACGACCCGATCGCTCAACTGAGGGTAGGACTGGTTCAAGCGGGTCGAAGAGGAAGCAGGGAGGTCAGGCGGTAGAAACTATGGAAATCATTCGCAATGTAATGGAACATTCAAATGACCGATTGAAGGCCATTGTAGAATGGTCGAATGTACAACGCCAAGATGCAAGCACAAGACTTGTGGAAGTCGTTAGACAGTTGCAGAGAATACTTGAACTAAGTAGATATGACAGGGTTTGCAGTATGCAGATACTTATGTGCAATGTGGACGACATGAAAGCATTCTTGGACATACTCGATGAGCTTAAATTGGACTATTGCACAATCATTTTTCAAGATAACGCTTAA
Protein sequence
MRECAETFTDVGSNLPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWSNVQRQDASTRLVEVVRQLQRILELSRYDRVCSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDNA
Homology
BLAST of MELO3C016461 vs. NCBI nr
Match:
KAA0060529.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 306.2 bits (783), Expect = 1.7e-79
Identity = 157/164 (95.73%), Postives = 157/164 (95.73%), Query Frame = 0
Query: 1 MRECAETFTDVGSNLPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRT 60
MR C ETFTDVGSN PEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRT
Sbjct: 1 MRGCVETFTDVGSNFPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRT 60
Query: 61 GSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWSNVQRQDASTRLVEVVRQLQRIL 120
GSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEW NVQRQDAS RLVEVVRQLQRI
Sbjct: 61 GSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWLNVQRQDASARLVEVVRQLQRIP 120
Query: 121 ELSRYDRVCSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDNA 165
ELSRYDRV SMQILMCNVDDMKAFLDILDELKLDYCTIIFQDNA
Sbjct: 121 ELSRYDRVRSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDNA 164
BLAST of MELO3C016461 vs. NCBI nr
Match:
TYK11924.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 165.6 bits (418), Expect = 3.5e-37
Identity = 89/144 (61.81%), Postives = 109/144 (75.69%), Query Frame = 0
Query: 8 FTDVGSNLPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKR 67
F DVGSN+P GYEGF D NDMEIP MYS+G+DM + I GTR + E R G S SK+
Sbjct: 8 FVDVGSNVPRGYEGFHVDYENDMEIPTMYSKGLDMSTYYIKGTRFGHTAEDRAGLSESKK 67
Query: 68 KQGGQAVETMEIIRNVMEHSNDRLKAIVEWSNVQRQDASTRLVEVVRQLQRILELSRYDR 127
K+GGQ++ET+EIIRNVME++ND+LKAI EW NVQ QDAST E VRQLQ ILELSR D+
Sbjct: 68 KKGGQSIETVEIIRNVMEYANDQLKAIAEWPNVQCQDASTTRFEFVRQLQGILELSRLDK 127
Query: 128 VCSMQILMCNVDDMKAFLDILDEL 152
+ +LM NV+DMKA LD+ D++
Sbjct: 128 AHCICLLMHNVNDMKASLDVSDDM 151
BLAST of MELO3C016461 vs. NCBI nr
Match:
KAA0041444.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK24318.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 156.4 bits (394), Expect = 2.1e-34
Identity = 84/158 (53.16%), Postives = 111/158 (70.25%), Query Frame = 0
Query: 6 ETFTDVGSNLPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGS 65
++F DVGSN P GY+ F AD DM+ P MY+QG++M SDD+MGTR E R SSGS
Sbjct: 166 KSFADVGSNDPAGYDAFLADAAPDMDFPPMYNQGLNMSSDDLMGTRTAWVREHRNVSSGS 225
Query: 66 KRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWSNVQRQDASTRLVEVVRQLQRILELSRY 125
KRK+ G + ++ +IIR ++E+ N++L I EW +QRQDAS EVVRQL+ I EL+
Sbjct: 226 KRKRAGHSADSGDIIRTLIEYENEQLNHIAEWPALQRQDASETRQEVVRQLEAIPELTLM 285
Query: 126 DRVCSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDN 164
DR M+ILM NVDDMKAFLD+ + +K YC+II Q+N
Sbjct: 286 DRCRLMRILMRNVDDMKAFLDVPNNMKYPYCSIILQEN 323
BLAST of MELO3C016461 vs. NCBI nr
Match:
KAA0048280.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 153.7 bits (387), Expect = 1.4e-33
Identity = 81/159 (50.94%), Postives = 111/159 (69.81%), Query Frame = 0
Query: 5 AETFTDVGSNLPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSG 64
AE+F D+GSN P GY+ F+ADD +D + MYS G++M DD+M TR R +E R SSG
Sbjct: 114 AESFADIGSNDPAGYDAFAADDVSDTDFLPMYSPGLNMSPDDLMETRTARVSERRNVSSG 173
Query: 65 SKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWSNVQRQDASTRLVEVVRQLQRILELSR 124
SKRK+ G A ++ +I+R ME+ N++L I EW +QRQDA+ E+VRQL+ I EL+
Sbjct: 174 SKRKRSGHATDSGDIVRTAMEYGNEQLHRIAEWPILQRQDATETRQEIVRQLEVIPELTL 233
Query: 125 YDRVCSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDN 164
DR M+I+M NVDDMKAFL++ D +K YC+II Q+N
Sbjct: 234 MDRCRLMRIIMRNVDDMKAFLEVPDNMKYPYCSIILQEN 272
BLAST of MELO3C016461 vs. NCBI nr
Match:
KAA0035629.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK30913.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 151.8 bits (382), Expect = 5.3e-33
Identity = 81/159 (50.94%), Postives = 106/159 (66.67%), Query Frame = 0
Query: 5 AETFTDVGSNLPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSG 64
AE F D+GSN P GY+ F AD D P MYS G++M DD+M TR R +E R SSG
Sbjct: 142 AENFADIGSNHPAGYDAFPADATPDTNFPSMYSSGLNMSPDDLMETRTARVSERRNVSSG 201
Query: 65 SKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWSNVQRQDASTRLVEVVRQLQRILELSR 124
SKRK+ G A ++ +I+R +E+ N++L I EW +QRQDAS E+VRQL+ I +L+
Sbjct: 202 SKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDASQTRQEIVRQLEAIPKLTL 261
Query: 125 YDRVCSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDN 164
DR M ILM NVDDMKAFL++ D +K YC+II Q+N
Sbjct: 262 MDRCRLMHILMRNVDDMKAFLEVSDNMKYPYCSIILQEN 300
BLAST of MELO3C016461 vs. ExPASy TrEMBL
Match:
A0A5A7V469 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00340 PE=4 SV=1)
HSP 1 Score: 306.2 bits (783), Expect = 8.1e-80
Identity = 157/164 (95.73%), Postives = 157/164 (95.73%), Query Frame = 0
Query: 1 MRECAETFTDVGSNLPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRT 60
MR C ETFTDVGSN PEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRT
Sbjct: 1 MRGCVETFTDVGSNFPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRT 60
Query: 61 GSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWSNVQRQDASTRLVEVVRQLQRIL 120
GSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEW NVQRQDAS RLVEVVRQLQRI
Sbjct: 61 GSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWLNVQRQDASARLVEVVRQLQRIP 120
Query: 121 ELSRYDRVCSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDNA 165
ELSRYDRV SMQILMCNVDDMKAFLDILDELKLDYCTIIFQDNA
Sbjct: 121 ELSRYDRVRSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDNA 164
BLAST of MELO3C016461 vs. ExPASy TrEMBL
Match:
A0A5D3CL79 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G00920 PE=4 SV=1)
HSP 1 Score: 165.6 bits (418), Expect = 1.7e-37
Identity = 89/144 (61.81%), Postives = 109/144 (75.69%), Query Frame = 0
Query: 8 FTDVGSNLPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKR 67
F DVGSN+P GYEGF D NDMEIP MYS+G+DM + I GTR + E R G S SK+
Sbjct: 8 FVDVGSNVPRGYEGFHVDYENDMEIPTMYSKGLDMSTYYIKGTRFGHTAEDRAGLSESKK 67
Query: 68 KQGGQAVETMEIIRNVMEHSNDRLKAIVEWSNVQRQDASTRLVEVVRQLQRILELSRYDR 127
K+GGQ++ET+EIIRNVME++ND+LKAI EW NVQ QDAST E VRQLQ ILELSR D+
Sbjct: 68 KKGGQSIETVEIIRNVMEYANDQLKAIAEWPNVQCQDASTTRFEFVRQLQGILELSRLDK 127
Query: 128 VCSMQILMCNVDDMKAFLDILDEL 152
+ +LM NV+DMKA LD+ D++
Sbjct: 128 AHCICLLMHNVNDMKASLDVSDDM 151
BLAST of MELO3C016461 vs. ExPASy TrEMBL
Match:
A0A5A7TDD6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00890 PE=4 SV=1)
HSP 1 Score: 156.4 bits (394), Expect = 1.0e-34
Identity = 84/158 (53.16%), Postives = 111/158 (70.25%), Query Frame = 0
Query: 6 ETFTDVGSNLPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGS 65
++F DVGSN P GY+ F AD DM+ P MY+QG++M SDD+MGTR E R SSGS
Sbjct: 166 KSFADVGSNDPAGYDAFLADAAPDMDFPPMYNQGLNMSSDDLMGTRTAWVREHRNVSSGS 225
Query: 66 KRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWSNVQRQDASTRLVEVVRQLQRILELSRY 125
KRK+ G + ++ +IIR ++E+ N++L I EW +QRQDAS EVVRQL+ I EL+
Sbjct: 226 KRKRAGHSADSGDIIRTLIEYENEQLNHIAEWPALQRQDASETRQEVVRQLEAIPELTLM 285
Query: 126 DRVCSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDN 164
DR M+ILM NVDDMKAFLD+ + +K YC+II Q+N
Sbjct: 286 DRCRLMRILMRNVDDMKAFLDVPNNMKYPYCSIILQEN 323
BLAST of MELO3C016461 vs. ExPASy TrEMBL
Match:
A0A5A7TYQ6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G002060 PE=4 SV=1)
HSP 1 Score: 153.7 bits (387), Expect = 6.7e-34
Identity = 81/159 (50.94%), Postives = 111/159 (69.81%), Query Frame = 0
Query: 5 AETFTDVGSNLPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSG 64
AE+F D+GSN P GY+ F+ADD +D + MYS G++M DD+M TR R +E R SSG
Sbjct: 114 AESFADIGSNDPAGYDAFAADDVSDTDFLPMYSPGLNMSPDDLMETRTARVSERRNVSSG 173
Query: 65 SKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWSNVQRQDASTRLVEVVRQLQRILELSR 124
SKRK+ G A ++ +I+R ME+ N++L I EW +QRQDA+ E+VRQL+ I EL+
Sbjct: 174 SKRKRSGHATDSGDIVRTAMEYGNEQLHRIAEWPILQRQDATETRQEIVRQLEVIPELTL 233
Query: 125 YDRVCSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDN 164
DR M+I+M NVDDMKAFL++ D +K YC+II Q+N
Sbjct: 234 MDRCRLMRIIMRNVDDMKAFLEVPDNMKYPYCSIILQEN 272
BLAST of MELO3C016461 vs. ExPASy TrEMBL
Match:
A0A5D3E474 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G001250 PE=4 SV=1)
HSP 1 Score: 151.8 bits (382), Expect = 2.6e-33
Identity = 81/159 (50.94%), Postives = 106/159 (66.67%), Query Frame = 0
Query: 5 AETFTDVGSNLPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSG 64
AE F D+GSN P GY+ F AD D P MYS G++M DD+M TR R +E R SSG
Sbjct: 142 AENFADIGSNHPAGYDAFPADATPDTNFPSMYSSGLNMSPDDLMETRTARVSERRNVSSG 201
Query: 65 SKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWSNVQRQDASTRLVEVVRQLQRILELSR 124
SKRK+ G A ++ +I+R +E+ N++L I EW +QRQDAS E+VRQL+ I +L+
Sbjct: 202 SKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDASQTRQEIVRQLEAIPKLTL 261
Query: 125 YDRVCSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDN 164
DR M ILM NVDDMKAFL++ D +K YC+II Q+N
Sbjct: 262 MDRCRLMHILMRNVDDMKAFLEVSDNMKYPYCSIILQEN 300
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0060529.1 | 1.7e-79 | 95.73 | retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon p... | [more] |
TYK11924.1 | 3.5e-37 | 61.81 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0041444.1 | 2.1e-34 | 53.16 | retrotransposon protein [Cucumis melo var. makuwa] >TYK24318.1 retrotransposon p... | [more] |
KAA0048280.1 | 1.4e-33 | 50.94 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0035629.1 | 5.3e-33 | 50.94 | retrotransposon protein [Cucumis melo var. makuwa] >TYK30913.1 retrotransposon p... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7V469 | 8.1e-80 | 95.73 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3CL79 | 1.7e-37 | 61.81 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7TDD6 | 1.0e-34 | 53.16 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7TYQ6 | 6.7e-34 | 50.94 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3E474 | 2.6e-33 | 50.94 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
Match Name | E-value | Identity | Description | |