MELO3C016240 (gene) Melon (DHL92) v4

Overview
NameMELO3C016240
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionTransposase
Locationchr07: 20926861 .. 20927486 (+)
RNA-Seq ExpressionMELO3C016240
SyntenyMELO3C016240
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAATCTTGTCCCGTGCCCTGAACCATGTATGGACTAAGGAGGAGGAGGACACTCTTTTAGAGTGTTTAGTGGAGTTGGTGTCCATTGAGGATGGAAATTTGATAATAGTACATTCCGGCCAGGTTACCTGGCTCAACTGATAGCATGATGGCCGAAAAAAATGTCTGGATGTCGTGTTCGCACAACCACTGTAATCGACTGAAAAATAAAGACACTTAAGTGGACATTTCAGGCCATTGCAGAAATGCGGGGGCCAGCGTGCAGTGGGTTCAGTTGGAACGATGAAGAAAATGCATAATTGCGGAGAAGGAAGTATTCGATAACTGGGTTAGGGTAAGGAAAATAATATAAACGTCACACTACTTGCGCAGTGTACATTTACTTCACAATTTTCCTATTAATACTTTTAAGTTGTTCTGTTTTTATGCAGTCGCATCCTGCAACGAAGGGGCTCCTTCACAAGCCATTTTTCTATTACGATGAACTTGTATATATGTTTGGACGCGATAGGGCGACGGATCGCTTTACTAAGACATTCATCAACGTTGGTTCTAACGAACTTACCGAGCATGAGGGGTTTGACATGTCGGACGGGAATGAGTTTCCATCCGTATACAGCTAG

mRNA sequence

ATGGCAATCTTGTCCCGTGCCCTGAACCATGTATGGACTAAGGAGGAGGAGGACACTCTTTTAGAGTGTTTAGTGGAGTTGGTGTCCATTGAGGATGGAAATTTGATAATAGTACATTCCGGCCAGTCGCATCCTGCAACGAAGGGGCTCCTTCACAAGCCATTTTTCTATTACGATGAACTTGTATATATGTTTGGACGCGATAGGGCGACGGATCGCTTTACTAAGACATTCATCAACGTTGGTTCTAACGAACTTACCGAGCATGAGGGGTTTGACATGTCGGACGGGAATGAGTTTCCATCCGTATACAGCTAG

Coding sequence (CDS)

ATGGCAATCTTGTCCCGTGCCCTGAACCATGTATGGACTAAGGAGGAGGAGGACACTCTTTTAGAGTGTTTAGTGGAGTTGGTGTCCATTGAGGATGGAAATTTGATAATAGTACATTCCGGCCAGTCGCATCCTGCAACGAAGGGGCTCCTTCACAAGCCATTTTTCTATTACGATGAACTTGTATATATGTTTGGACGCGATAGGGCGACGGATCGCTTTACTAAGACATTCATCAACGTTGGTTCTAACGAACTTACCGAGCATGAGGGGTTTGACATGTCGGACGGGAATGAGTTTCCATCCGTATACAGCTAG

Protein sequence

MAILSRALNHVWTKEEEDTLLECLVELVSIEDGNLIIVHSGQSHPATKGLLHKPFFYYDELVYMFGRDRATDRFTKTFINVGSNELTEHEGFDMSDGNEFPSVYS
Homology
[Close]
BLAST of MELO3C016240 vs. NCBI nr
Match: TYK16489.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 219.5 bits (558), Expect = 1.3e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 1   MAILSRALNHVWTKEEEDTLLECLVELVSIEDGNLIIVHSGQSHPATKGLLHKPFFYYDE 60
           MAILSRALNHVWTKEEEDTLLECLVELVSIEDGNLIIVHSGQSHPATKGLLHKPFFYYDE
Sbjct: 1   MAILSRALNHVWTKEEEDTLLECLVELVSIEDGNLIIVHSGQSHPATKGLLHKPFFYYDE 60

Query: 61  LVYMFGRDRATDRFTKTFINVGSNELTEHEGFDMSDGNEFPSVYS 106
           LVYMFGRDRATDRFTKTFINVGSNELTEHEGFDMSDGNEFPSVYS
Sbjct: 61  LVYMFGRDRATDRFTKTFINVGSNELTEHEGFDMSDGNEFPSVYS 105

[Close]
BLAST of MELO3C016240 vs. NCBI nr
Match: KAA0044982.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 186.0 bits (471), Expect = 1.6e-43
Identity = 91/105 (86.67%), Postives = 96/105 (91.43%), Query Frame = 0 

Query: 1   MAILSRALNHVWTKEEEDTLLECLVELVSIEDGNLIIVHSGQSHPATKGLLHKPFFYYDE 60
           MA LSRALNHVWTKEEEDTL+ECLVELVSI DGNLI+     SHPA  GLL+KPFFYYD+
Sbjct: 1   MATLSRALNHVWTKEEEDTLIECLVELVSIGDGNLIM-----SHPAANGLLNKPFFYYDK 60

Query: 61  LVYMFGRDRATDRFTKTFINVGSNELTEHEGFDMSDGNEFPSVYS 106
           LVYMFGRDRATDRFTKTFI+VGSNELTEHEGFDMSDGNEFPSVYS
Sbjct: 61  LVYMFGRDRATDRFTKTFIDVGSNELTEHEGFDMSDGNEFPSVYS 100

[Close]
BLAST of MELO3C016240 vs. NCBI nr
Match: KAA0054470.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK14569.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 131.0 bits (328), Expect = 6.2e-27
Identity = 74/131 (56.49%), Postives = 85/131 (64.89%), Query Frame = 0 

Query: 1   MAILSRALNHVWTKEEEDTLLECLVELVSI-------------------------EDGNL 60
           MA  S A  HVWTKEEEDTL+ECLVELVS                          +DG  
Sbjct: 1   MATSSCAPKHVWTKEEEDTLVECLVELVSTRGWTSDNGAFRPEMRGPACSGFGWNDDGKC 60

Query: 61  IIVHSGQSHPATKGLLHKPFFYYDELVYMFGRDRATDRFTKTFINVGSNELTEHEGFDMS 106
           II    +SHPA K LL+KPF YYDEL Y+F  +RATDRFTKTF++VGSN+ TE+EGFDMS
Sbjct: 61  IIAEK-ESHPAAKRLLNKPFPYYDELEYVFRCNRATDRFTKTFVDVGSNKCTEYEGFDMS 120

[Close]
BLAST of MELO3C016240 vs. NCBI nr
Match: KAA0055383.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 130.2 bits (326), Expect = 1.1e-26
Identity = 70/133 (52.63%), Postives = 86/133 (64.66%), Query Frame = 0 

Query: 1   MAILSRALNHVWTKEEEDTLLECLVELVSIEDGNLIIVHSGQ------------------ 60
           M+  +R L HVWTKEE++TL+ECL+ELVS+ DGN I+V S Q                  
Sbjct: 1   MSTSNRVLRHVWTKEEDETLVECLMELVSMGDGNQIMVRSAQDNLRSWPLPKCGVQRAVA 60

Query: 61  --------SHPATKGLLHKPFFYYDELVYMFGRDRATDRFTKTFINVGSNELT-EHEGFD 106
                   SHP  KGLL+KPF YYDEL Y+FGRDRAT+RF +TF +VGSNE +  ++ FD
Sbjct: 61  LGGTMKRNSHPVAKGLLNKPFLYYDELTYVFGRDRATNRFVETFADVGSNEPSGGYDRFD 120

[Close]
BLAST of MELO3C016240 vs. NCBI nr
Match: TYK00096.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 126.7 bits (317), Expect = 1.2e-25
Identity = 65/107 (60.75%), Postives = 77/107 (71.96%), Query Frame = 0 

Query: 1   MAILSRALNHVWTKEEEDTLLECLVELVSIEDGNLIIVHSGQSHPATKGLLHKPFFYYDE 60
           MA  SRA  HVW KE+EDTL+ECLVEL               SH ATK LL+KPF+YYDE
Sbjct: 133 MATSSRAPKHVWMKEKEDTLVECLVEL---------------SHLATKSLLNKPFYYYDE 192

Query: 61  LVYMFGRDRATDRFTKTFINVGSNELTEHEGFDMSDGNE--FPSVYS 106
           L Y+F RDRAT RF +TF+++GSNE  E+EGFDMSDGN+  FPS+YS
Sbjct: 193 LAYVFERDRATGRFIETFVDIGSNEHAEYEGFDMSDGNDMKFPSMYS 224

[Close]
BLAST of MELO3C016240 vs. ExPASy TrEMBL
Match: A0A5D3D1Y9 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G002940 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 6.4e-54
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 1   MAILSRALNHVWTKEEEDTLLECLVELVSIEDGNLIIVHSGQSHPATKGLLHKPFFYYDE 60
           MAILSRALNHVWTKEEEDTLLECLVELVSIEDGNLIIVHSGQSHPATKGLLHKPFFYYDE
Sbjct: 1   MAILSRALNHVWTKEEEDTLLECLVELVSIEDGNLIIVHSGQSHPATKGLLHKPFFYYDE 60

Query: 61  LVYMFGRDRATDRFTKTFINVGSNELTEHEGFDMSDGNEFPSVYS 106
           LVYMFGRDRATDRFTKTFINVGSNELTEHEGFDMSDGNEFPSVYS
Sbjct: 61  LVYMFGRDRATDRFTKTFINVGSNELTEHEGFDMSDGNEFPSVYS 105

[Close]
BLAST of MELO3C016240 vs. ExPASy TrEMBL
Match: A0A5A7TNP3 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002900 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 7.9e-44
Identity = 91/105 (86.67%), Postives = 96/105 (91.43%), Query Frame = 0 

Query: 1   MAILSRALNHVWTKEEEDTLLECLVELVSIEDGNLIIVHSGQSHPATKGLLHKPFFYYDE 60
           MA LSRALNHVWTKEEEDTL+ECLVELVSI DGNLI+     SHPA  GLL+KPFFYYD+
Sbjct: 1   MATLSRALNHVWTKEEEDTLIECLVELVSIGDGNLIM-----SHPAANGLLNKPFFYYDK 60

Query: 61  LVYMFGRDRATDRFTKTFINVGSNELTEHEGFDMSDGNEFPSVYS 106
           LVYMFGRDRATDRFTKTFI+VGSNELTEHEGFDMSDGNEFPSVYS
Sbjct: 61  LVYMFGRDRATDRFTKTFIDVGSNELTEHEGFDMSDGNEFPSVYS 100

[Close]
BLAST of MELO3C016240 vs. ExPASy TrEMBL
Match: A0A5A7UGT2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00580 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.0e-27
Identity = 74/131 (56.49%), Postives = 85/131 (64.89%), Query Frame = 0 

Query: 1   MAILSRALNHVWTKEEEDTLLECLVELVSI-------------------------EDGNL 60
           MA  S A  HVWTKEEEDTL+ECLVELVS                          +DG  
Sbjct: 1   MATSSCAPKHVWTKEEEDTLVECLVELVSTRGWTSDNGAFRPEMRGPACSGFGWNDDGKC 60

Query: 61  IIVHSGQSHPATKGLLHKPFFYYDELVYMFGRDRATDRFTKTFINVGSNELTEHEGFDMS 106
           II    +SHPA K LL+KPF YYDEL Y+F  +RATDRFTKTF++VGSN+ TE+EGFDMS
Sbjct: 61  IIAEK-ESHPAAKRLLNKPFPYYDELEYVFRCNRATDRFTKTFVDVGSNKCTEYEGFDMS 120

[Close]
BLAST of MELO3C016240 vs. ExPASy TrEMBL
Match: A0A5A7UHG9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold80G002280 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 5.1e-27
Identity = 70/133 (52.63%), Postives = 86/133 (64.66%), Query Frame = 0 

Query: 1   MAILSRALNHVWTKEEEDTLLECLVELVSIEDGNLIIVHSGQ------------------ 60
           M+  +R L HVWTKEE++TL+ECL+ELVS+ DGN I+V S Q                  
Sbjct: 1   MSTSNRVLRHVWTKEEDETLVECLMELVSMGDGNQIMVRSAQDNLRSWPLPKCGVQRAVA 60

Query: 61  --------SHPATKGLLHKPFFYYDELVYMFGRDRATDRFTKTFINVGSNELT-EHEGFD 106
                   SHP  KGLL+KPF YYDEL Y+FGRDRAT+RF +TF +VGSNE +  ++ FD
Sbjct: 61  LGGTMKRNSHPVAKGLLNKPFLYYDELTYVFGRDRATNRFVETFADVGSNEPSGGYDRFD 120

[Close]
BLAST of MELO3C016240 vs. ExPASy TrEMBL
Match: A0A5D3BP98 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00510 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 5.7e-26
Identity = 65/107 (60.75%), Postives = 77/107 (71.96%), Query Frame = 0 

Query: 1   MAILSRALNHVWTKEEEDTLLECLVELVSIEDGNLIIVHSGQSHPATKGLLHKPFFYYDE 60
           MA  SRA  HVW KE+EDTL+ECLVEL               SH ATK LL+KPF+YYDE
Sbjct: 133 MATSSRAPKHVWMKEKEDTLVECLVEL---------------SHLATKSLLNKPFYYYDE 192

Query: 61  LVYMFGRDRATDRFTKTFINVGSNELTEHEGFDMSDGNE--FPSVYS 106
           L Y+F RDRAT RF +TF+++GSNE  E+EGFDMSDGN+  FPS+YS
Sbjct: 193 LAYVFERDRATGRFIETFVDIGSNEHAEYEGFDMSDGNDMKFPSMYS 224

The following BLAST results are available for this feature:
BLAST of MELO3C016240 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK16489.11.3e-53100.00transposase [Cucumis melo var. makuwa][more]
KAA0044982.11.6e-4386.67transposase [Cucumis melo var. makuwa][more]
KAA0054470.16.2e-2756.49retrotransposon protein [Cucumis melo var. makuwa] >TYK14569.1 retrotransposon p... [more]
KAA0055383.11.1e-2652.63retrotransposon protein [Cucumis melo var. makuwa][more]
TYK00096.11.2e-2560.75putative nuclease HARBI1 [Cucumis melo var. makuwa][more]
BLAST of MELO3C016240 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C016240 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3D1Y96.4e-54100.00Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G002940 PE... [more]
A0A5A7TNP37.9e-4486.67Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002900 PE... [more]
A0A5A7UGT23.0e-2756.49Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UHG95.1e-2752.63Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BP985.7e-2660.75Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
BLAST of MELO3C016240 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C016240.1MELO3C016240.1mRNA